CN189435

Overview
NameCN189435
Unique NameCN189435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX6_CAVPO (Probable ATP-dependent RNA helicase DDX6 (Fragment) OS=Cavia porcellus GN=DDX6 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.547e-27
Identity = 61/155 (39.35%), Postives = 99/155 (63.87%), Query Frame = 3
Query:  246 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            + F+   L+  LL GI+  G+EKPS IQ+  I     G D++ +A++GTGK+  +   +L++LD      QA+V+ PTRELA Q+ ++   +  ++ G KV A  GGT++R+D   L   VHVV+ TPGR+ D++++   + D+++M VLDEAD+
Sbjct:   85 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALTGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 239          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX6_XENLA (ATP-dependent RNA helicase ddx6 OS=Xenopus laevis GN=ddx6 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.116e-26
Identity = 62/155 (40.00%), Postives = 99/155 (63.87%), Query Frame = 3
Query:  246 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            + F+   L+  LL GI+  G+EKPS IQ+  I     G D++ +A++GTGK+  +   +L++LD      QA+V+ PTRELA Q+ ++   +  ++ G KV A  GGT++R+D   L   VHVV+ TPGR+ D++++   + D+I+M VLDEAD+
Sbjct:   95 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDCIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHIQMIVLDEADK 249          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH8_ORYSJ (DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa subsp. japonica GN=Os02g0641800 PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.458e-26
Identity = 62/154 (40.26%), Postives = 94/154 (61.04%), Query Frame = 3
Query:  246 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            + F+   L+  LL GIY  GFE+PS IQ+  I     G D++ +A++GTGKTA FC   L+++D      Q ++L PTRELA Q  +V + LG +L ++V    GGTS+++D   L   VH++VGTPGR+ D+ ++         M ++DEAD+
Sbjct:  134 NEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQEKNAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIIRLYQPVHLLVGTPGRILDLTKKGICILKDCSMLIMDEADK 287          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DHH1_ASPTN (ATP-dependent RNA helicase dhh1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.458e-26
Identity = 68/181 (37.57%), Postives = 101/181 (55.80%), Query Frame = 3
Query:  177 DTKMNELLSTDGQDFFTSYDEVYDS----FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            D K  + L T  +D     ++V  +    F+   ++  L+ GI+  GFEKPS IQ+  I     G D++ +A++GTGKTA F    L++++    + QAL+L PTRELA Q   V + LG +LG+ V    GGT + +D   L   VH++VGTPGRV D+  +          FV+DEAD+
Sbjct:   20 DAKWKDQLKTPAKDARPQTEDVTATKGLEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSHVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADK 200          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX6_DICDI (Probable ATP-dependent RNA helicase ddx6 OS=Dictyostelium discoideum GN=ddx6 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.458e-26
Identity = 63/154 (40.91%), Postives = 95/154 (61.69%), Query Frame = 3
Query:  246 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            + FD + L+ +LLRGI+  G+ KPS IQ++ I     G D++ +A++GTGKTA+F    L++ D      Q L+L PTRELA Q  +V + LG Y+ V+V A  GGTS+++D   L   VH++V TPGRV D+ ++           ++DEAD+
Sbjct:   49 NDFDDLHLKRDLLRGIFEKGYVKPSPIQEKAIPIALAGRDIMARAKNGTGKTASFLIPALEKTDPTKDVIQVLILVPTRELALQTSQVCKELGKYMNVQVMASTGGTSLKDDIMRLYNPVHILVATPGRVLDLAQKNVANLSNCHTMIMDEADK 202          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DHH1_SCHPO (Putative ATP-dependent RNA helicase ste13 OS=Schizosaccharomyces pombe GN=ste13 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.904e-26
Identity = 65/152 (42.76%), Postives = 92/152 (60.53%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            F+   L+  LL GI+  GFE+PS IQ+  I     G D++ +A++GTGKTA F    L+++D    + Q L+L PTRELA Q  +V + LG ++ VKV    GGT++R+D   L   VH+VVGTPGRV D+  +          FV+DEAD+
Sbjct:   46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADK 197          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DHH1_PHANO (ATP-dependent RNA helicase DHH1 OS=Phaeosphaeria nodorum GN=DHH1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.904e-26
Identity = 61/152 (40.13%), Postives = 94/152 (61.84%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            F+   ++  L+ GI+  GFEKPS IQ+  I     G D++ +A++GTGKTA F    L++++  + + QAL+L PTRELA Q  +V + LG +LG+ V    GGT +++D   L   VH++VGTPGR+ D+  +        + FV+DEAD+
Sbjct:   51 FEDFFIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERVNPKISKTQALILVPTRELALQTSQVCKTLGKHLGINVMVSTGGTGLKDDIIRLSDPVHIIVGTPGRILDLAGKGVADLSTCQTFVMDEADK 202          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DHH1_ASPNC (ATP-dependent RNA helicase dhh1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.904e-26
Identity = 68/181 (37.57%), Postives = 101/181 (55.80%), Query Frame = 3
Query:  177 DTKMNELLSTDGQDFFTSYDEVYDS----FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            D K  E L+   +D     ++V  +    F+   ++  L+ GI+  GFEKPS IQ+  I     G D++ +A++GTGKTA F    L++++    + QAL+L PTRELA Q   V + LG +LG+ V    GGT + +D   L   VH++VGTPGRV D+  +          FV+DEAD+
Sbjct:   20 DAKWKEQLNVPAKDARPQTEDVTATKGLEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSHVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADK 200          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX6_PONAB (Probable ATP-dependent RNA helicase DDX6 OS=Pongo abelii GN=DDX6 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.904e-26
Identity = 61/155 (39.35%), Postives = 98/155 (63.23%), Query Frame = 3
Query:  246 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            + F+   L+  LL GI+  G+EKPS IQ+  I     G D++ +A++GTGK+  +   +L++LD      QA+V+ PTRELA Q+ ++   +  ++ G KV A  GGT++R D   L   VHVV+ TPGR+ D++++   + D+++M VLDEAD+
Sbjct:   96 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRGDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 250          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX6_CHICK (Probable ATP-dependent RNA helicase DDX6 OS=Gallus gallus GN=DDX6 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.904e-26
Identity = 60/155 (38.71%), Postives = 99/155 (63.87%), Query Frame = 3
Query:  246 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            + F+   L+  LL GI+  G+EKPS IQ+  I     G D++ +A++GTGK+  +   +L++LD      QA+V+ PTRELA Q+ ++   +  ++ G KV A  GGT++R+D   L   VHVV+ TPGR+ D++++   + ++++M VLDEAD+
Sbjct:   96 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVEHVQMIVLDEADK 250          
The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DDX6_CAVPO8.547e-2739.35Probable ATP-dependent RNA helicase DDX6 (Fragment... [more]
DDX6_XENLA1.116e-2640.00ATP-dependent RNA helicase ddx6 OS=Xenopus laevis ... [more]
RH8_ORYSJ1.458e-2640.26DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sat... [more]
DHH1_ASPTN1.458e-2637.57ATP-dependent RNA helicase dhh1 OS=Aspergillus ter... [more]
DDX6_DICDI1.458e-2640.91Probable ATP-dependent RNA helicase ddx6 OS=Dictyo... [more]
DHH1_SCHPO1.904e-2642.76Putative ATP-dependent RNA helicase ste13 OS=Schiz... [more]
DHH1_PHANO1.904e-2640.13ATP-dependent RNA helicase DHH1 OS=Phaeosphaeria n... [more]
DHH1_ASPNC1.904e-2637.57ATP-dependent RNA helicase dhh1 OS=Aspergillus nig... [more]
DDX6_PONAB1.904e-2639.35Probable ATP-dependent RNA helicase DDX6 OS=Pongo ... [more]
DDX6_CHICK1.904e-2638.71Probable ATP-dependent RNA helicase DDX6 OS=Gallus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bp
GCAGGCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCAATC
TTCTCCTTCTCTTTGAAAAAAAAAAGAAAACCAACTCTTTCTCTCCATTT
TAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAG
GATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGCTC
TCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAG
TTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCTT
ATGGGTTTGAGAAGCCTTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTC
TGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAAC
AGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCC
AATGTCAGGCCCTGGTGTTGGCACCCACTAGGGAACTAGCTCAACAAATT
GAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGC
TTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCTG
GTGTTCATGTTGTTGTTGGCACTCCTGGTCGTGTGTTTGACATGCTGCGC
CGACAGTCTTTACGCCCTGATTACATTAAGATGTTTGTACTGGATGAGGC
TGATGAAAT
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