CN189435

Overview
NameCN189435
Unique NameCN189435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DHH1_ASPOR (ATP-dependent RNA helicase dhh1 OS=Aspergillus oryzae GN=dhh1 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.248e-26
Identity = 67/181 (37.02%), Postives = 101/181 (55.80%), Query Frame = 3
Query:  177 DTKMNELLSTDGQDFFTSYDEVYDS----FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            DT+  + L    +D     ++V  +    F+   ++  L+ GI+  GFEKPS IQ+  I     G D++ +A++GTGKTA F    L++++    + QAL+L PTRELA Q   V + LG +LG+ V    GGT + +D   L   VH++VGTPGRV D+  +          FV+DEAD+
Sbjct:   20 DTRWKDQLKAPAKDARPQTEDVTATKGLEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSHVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADK 200          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DHH1_ASHGO (ATP-dependent RNA helicase DHH1 OS=Ashbya gossypii GN=DHH1 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.242e-26
Identity = 63/154 (40.91%), Postives = 94/154 (61.04%), Query Frame = 3
Query:  246 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            ++F+   L+  LL GI+  GFE+PS IQ+  I       D++ +A++GTGKTA F    L+ +   + + QAL++ PTRELA Q  +V+R LG + G+      GGT++R+D   L   VHV+VGTPGRV D+  R+        +FV+DEAD+
Sbjct:   29 NTFEDFYLRRELLMGIFEAGFERPSPIQEEAIPIALARRDILARAKNGTGKTAAFVIPTLEIVKPKVNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIMRLNEPVHVLVGTPGRVLDLASRKVADLSECSLFVMDEADK 182          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DHH1_NEOFI (ATP-dependent RNA helicase dhh1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.540e-26
Identity = 62/152 (40.79%), Postives = 91/152 (59.87%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            F+   ++  L+ GI+  GFEKPS IQ+  I     G D++ +A++GTGKTA F    L++++    + QAL+L PTRELA Q  +V + LG +LG+ V    GGT + +D   L   VH++VGTPGRV D+  +          FV+DEAD+
Sbjct:   49 FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADK 200          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DHH1_ASPFU (ATP-dependent RNA helicase dhh1 OS=Aspergillus fumigatus GN=dhh1 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.540e-26
Identity = 62/152 (40.79%), Postives = 91/152 (59.87%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            F+   ++  L+ GI+  GFEKPS IQ+  I     G D++ +A++GTGKTA F    L++++    + QAL+L PTRELA Q  +V + LG +LG+ V    GGT + +D   L   VH++VGTPGRV D+  +          FV+DEAD+
Sbjct:   49 FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADK 200          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: CGH1_CAEEL (ATP-dependent RNA helicase cgh-1 OS=Caenorhabditis elegans GN=cgh-1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.540e-26
Identity = 58/152 (38.16%), Postives = 93/152 (61.18%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            F+   L  +LL GI+  G+EKPS IQ+  I     G D++ +A++GTGKT  +C  +++++   L   QA+V+ PTRELA Q  ++   L  ++ +KV    GGT +R+D   L   VH+V+ TPGR+ D++ +   + ++ K  VLDEAD+
Sbjct:   45 FEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEKIQPALKAIQAMVIVPTRELALQTSQICVELSKHIQLKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRILDLMEKGVAKMEHCKTLVLDEADK 196          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP5_SCLS1 (ATP-dependent RNA helicase dbp5 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp5 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.236e-26
Identity = 75/190 (39.47%), Postives = 114/190 (60.00%), Query Frame = 3
Query:  150 GSQFDARQYDTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG---LDVIQQAQSGTGKTATFCSGILQQLDYGLVQC-QALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            G      QY+    E+  +D Q   TS     D+F+ +G+  ++L+G+YA  F+KPS IQ++ + P   G    ++I Q+QSGTGKTA F   IL +LD+      QAL LAP+RELA+QIE V+R++G ++ G+ V A + G      +R  +    V+VGTPG V D+++R+S+    +K+  LDEAD
Sbjct:   40 GGTLQDGQYEV---EVKLSDIQGDQTSPLYSVDTFEQLGIDASILKGLYAMNFKKPSKIQEKAL-PLLLGNPPTNMIAQSQSGTGKTAAFVITILSRLDFSKPTTPQALCLAPSRELARQIEGVVRSIGQFVEGLSVQAAIPGAV----ERNARVNAMVIVGTPGTVMDLIKRKSIDASQMKVLCLDEAD 221          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: Y2316_STAA8 (Probable DEAD-box ATP-dependent RNA helicase SAOUHSC_02316 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_02316 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.105e-25
Identity = 60/153 (39.22%), Postives = 96/153 (62.75%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +F  +G+ +N ++ + + GF++P+ IQ+  I    +G+D++ QAQ+GTGKT  F   +++++  G    Q+L+LAPTRELA Q+ + +R      GV+V    GG  +    + L+ G  +VVGTPGRV D L R++L+ D I   +LDEADE
Sbjct:    3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKV-VGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADE 154          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: Y2168_STAAR (Probable DEAD-box ATP-dependent RNA helicase SAR2168 OS=Staphylococcus aureus (strain MRSA252) GN=SAR2168 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.105e-25
Identity = 60/153 (39.22%), Postives = 96/153 (62.75%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +F  +G+ +N ++ + + GF++P+ IQ+  I    +G+D++ QAQ+GTGKT  F   +++++  G    Q+L+LAPTRELA Q+ + +R      GV+V    GG  +    + L+ G  +VVGTPGRV D L R++L+ D I   +LDEADE
Sbjct:    3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKV-VGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADE 154          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: Y2081_STAAM (Probable DEAD-box ATP-dependent RNA helicase SAV2081 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV2081 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.105e-25
Identity = 60/153 (39.22%), Postives = 96/153 (62.75%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +F  +G+ +N ++ + + GF++P+ IQ+  I    +G+D++ QAQ+GTGKT  F   +++++  G    Q+L+LAPTRELA Q+ + +R      GV+V    GG  +    + L+ G  +VVGTPGRV D L R++L+ D I   +LDEADE
Sbjct:    3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKV-VGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADE 154          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: Y2072_STAAC (Probable DEAD-box ATP-dependent RNA helicase SACOL2072 OS=Staphylococcus aureus (strain COL) GN=SACOL2072 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.105e-25
Identity = 60/153 (39.22%), Postives = 96/153 (62.75%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +F  +G+ +N ++ + + GF++P+ IQ+  I    +G+D++ QAQ+GTGKT  F   +++++  G    Q+L+LAPTRELA Q+ + +R      GV+V    GG  +    + L+ G  +VVGTPGRV D L R++L+ D I   +LDEADE
Sbjct:    3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKV-VGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADE 154          
The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DHH1_ASPOR3.248e-2637.02ATP-dependent RNA helicase dhh1 OS=Aspergillus ory... [more]
DHH1_ASHGO4.242e-2640.91ATP-dependent RNA helicase DHH1 OS=Ashbya gossypii... [more]
DHH1_NEOFI5.540e-2640.79ATP-dependent RNA helicase dhh1 OS=Neosartorya fis... [more]
DHH1_ASPFU5.540e-2640.79ATP-dependent RNA helicase dhh1 OS=Aspergillus fum... [more]
CGH1_CAEEL5.540e-2638.16ATP-dependent RNA helicase cgh-1 OS=Caenorhabditis... [more]
DBP5_SCLS17.236e-2639.47ATP-dependent RNA helicase dbp5 OS=Sclerotinia scl... [more]
Y2316_STAA82.105e-2539.22Probable DEAD-box ATP-dependent RNA helicase SAOUH... [more]
Y2168_STAAR2.105e-2539.22Probable DEAD-box ATP-dependent RNA helicase SAR21... [more]
Y2081_STAAM2.105e-2539.22Probable DEAD-box ATP-dependent RNA helicase SAV20... [more]
Y2072_STAAC2.105e-2539.22Probable DEAD-box ATP-dependent RNA helicase SACOL... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bp
GCAGGCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCAATC
TTCTCCTTCTCTTTGAAAAAAAAAAGAAAACCAACTCTTTCTCTCCATTT
TAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAG
GATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGCTC
TCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAG
TTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCTT
ATGGGTTTGAGAAGCCTTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTC
TGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAAC
AGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCC
AATGTCAGGCCCTGGTGTTGGCACCCACTAGGGAACTAGCTCAACAAATT
GAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGC
TTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCTG
GTGTTCATGTTGTTGTTGGCACTCCTGGTCGTGTGTTTGACATGCTGCGC
CGACAGTCTTTACGCCCTGATTACATTAAGATGTTTGTACTGGATGAGGC
TGATGAAAT
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