CN189435

Overview
NameCN189435
Unique NameCN189435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: Y2037_STAA3 (Probable DEAD-box ATP-dependent RNA helicase SAUSA300_2037 OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_2037 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.105e-25
Identity = 60/153 (39.22%), Postives = 96/153 (62.75%), Query Frame = 3 
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +F  +G+ +N ++ + + GF++P+ IQ+  I    +G+D++ QAQ+GTGKT  F   +++++  G    Q+L+LAPTRELA Q+ + +R      GV+V    GG  +    + L+ G  +VVGTPGRV D L R++L+ D I   +LDEADE
Sbjct:    3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKV-VGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADE 154
[Close]
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: Y2004_STAAW (Probable DEAD-box ATP-dependent RNA helicase MW2004 OS=Staphylococcus aureus (strain MW2) GN=MW2004 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.105e-25
Identity = 60/153 (39.22%), Postives = 96/153 (62.75%), Query Frame = 3 
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +F  +G+ +N ++ + + GF++P+ IQ+  I    +G+D++ QAQ+GTGKT  F   +++++  G    Q+L+LAPTRELA Q+ + +R      GV+V    GG  +    + L+ G  +VVGTPGRV D L R++L+ D I   +LDEADE
Sbjct:    3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKV-VGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADE 154
[Close]
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: Y1985_STAAS (Probable DEAD-box ATP-dependent RNA helicase SAS1985 OS=Staphylococcus aureus (strain MSSA476) GN=SAS1985 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.105e-25
Identity = 60/153 (39.22%), Postives = 96/153 (62.75%), Query Frame = 3 
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +F  +G+ +N ++ + + GF++P+ IQ+  I    +G+D++ QAQ+GTGKT  F   +++++  G    Q+L+LAPTRELA Q+ + +R      GV+V    GG  +    + L+ G  +VVGTPGRV D L R++L+ D I   +LDEADE
Sbjct:    3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKV-VGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADE 154
[Close]
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: Y1885_STAAN (Probable DEAD-box ATP-dependent RNA helicase SA1885 OS=Staphylococcus aureus (strain N315) GN=SA1885 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.105e-25
Identity = 60/153 (39.22%), Postives = 96/153 (62.75%), Query Frame = 3 
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +F  +G+ +N ++ + + GF++P+ IQ+  I    +G+D++ QAQ+GTGKT  F   +++++  G    Q+L+LAPTRELA Q+ + +R      GV+V    GG  +    + L+ G  +VVGTPGRV D L R++L+ D I   +LDEADE
Sbjct:    3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKV-VGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADE 154
[Close]
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: CSHA_BACHK (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus thuringiensis subsp. konkukian GN=cshA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.105e-25
Identity = 60/153 (39.22%), Postives = 94/153 (61.44%), Query Frame = 3 
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +F  +GL ++LL+ + + GFE+ + IQ   I    +G D+I QAQ+GTGKTA F   +L ++D      Q +V+APTRELA Q+ + +  +G +  V++    GG  +    R L+   H++VGTPGR+ D + R++LR   ++  VLDEADE
Sbjct:    3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADE 155
[Close]
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: CSHA_BACCZ (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ZK / E33L) GN=cshA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.105e-25
Identity = 60/153 (39.22%), Postives = 94/153 (61.44%), Query Frame = 3 
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +F  +GL ++LL+ + + GFE+ + IQ   I    +G D+I QAQ+GTGKTA F   +L ++D      Q +V+APTRELA Q+ + +  +G +  V++    GG  +    R L+   H++VGTPGR+ D + R++LR   ++  VLDEADE
Sbjct:    3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADE 155
[Close]
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: CSHA_BACCR (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=cshA PE=3 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.105e-25
Identity = 60/153 (39.22%), Postives = 94/153 (61.44%), Query Frame = 3 
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +F  +GL ++LL+ + + GFE+ + IQ   I    +G D+I QAQ+GTGKTA F   +L ++D      Q +V+APTRELA Q+ + +  +G +  V++    GG  +    R L+   H++VGTPGR+ D + R++LR   ++  VLDEADE
Sbjct:    3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADE 155
[Close]
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: CSHA_BACC1 (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ATCC 10987) GN=cshA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.105e-25
Identity = 60/153 (39.22%), Postives = 94/153 (61.44%), Query Frame = 3 
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +F  +GL ++LL+ + + GFE+ + IQ   I    +G D+I QAQ+GTGKTA F   +L ++D      Q +V+APTRELA Q+ + +  +G +  V++    GG  +    R L+   H++VGTPGR+ D + R++LR   ++  VLDEADE
Sbjct:    3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADE 155
[Close]
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: CSHA_BACAN (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus anthracis GN=cshA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.105e-25
Identity = 60/153 (39.22%), Postives = 94/153 (61.44%), Query Frame = 3 
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +F  +GL ++LL+ + + GFE+ + IQ   I    +G D+I QAQ+GTGKTA F   +L ++D      Q +V+APTRELA Q+ + +  +G +  V++    GG  +    R L+   H++VGTPGR+ D + R++LR   ++  VLDEADE
Sbjct:    3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADE 155
[Close]
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: CSHA_BACAH (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus thuringiensis (strain Al Hakam) GN=cshA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.105e-25
Identity = 60/153 (39.22%), Postives = 94/153 (61.44%), Query Frame = 3 
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +F  +GL ++LL+ + + GFE+ + IQ   I    +G D+I QAQ+GTGKTA F   +L ++D      Q +V+APTRELA Q+ + +  +G +  V++    GG  +    R L+   H++VGTPGR+ D + R++LR   ++  VLDEADE
Sbjct:    3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADE 155
The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
Y2037_STAA32.105e-2539.22Probable DEAD-box ATP-dependent RNA helicase SAUSA... [more]
Y2004_STAAW2.105e-2539.22Probable DEAD-box ATP-dependent RNA helicase MW200... [more]
Y1985_STAAS2.105e-2539.22Probable DEAD-box ATP-dependent RNA helicase SAS19... [more]
Y1885_STAAN2.105e-2539.22Probable DEAD-box ATP-dependent RNA helicase SA188... [more]
CSHA_BACHK2.105e-2539.22DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACCZ2.105e-2539.22DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACCR2.105e-2539.22DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACC12.105e-2539.22DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACAN2.105e-2539.22DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACAH2.105e-2539.22DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bp
GCAGGCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCAATC
TTCTCCTTCTCTTTGAAAAAAAAAAGAAAACCAACTCTTTCTCTCCATTT
TAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAG
GATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGCTC
TCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAG
TTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCTT
ATGGGTTTGAGAAGCCTTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTC
TGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAAC
AGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCC
AATGTCAGGCCCTGGTGTTGGCACCCACTAGGGAACTAGCTCAACAAATT
GAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGC
TTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCTG
GTGTTCATGTTGTTGTTGGCACTCCTGGTCGTGTGTTTGACATGCTGCGC
CGACAGTCTTTACGCCCTGATTACATTAAGATGTTTGTACTGGATGAGGC
TGATGAAAT
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