CN189435

Overview
NameCN189435
Unique NameCN189435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH52B_ORYSJ (DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa subsp. japonica GN=PL10B PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 61/160 (38.12%), Postives = 84/160 (52.50%), Query Frame = 3
Query:  267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC----SGILQ----------QLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            L EN+ R  Y     KP+ +Q+  I     G D++  AQ+G+GKTA FC    SGI++          +  Y L    AL+L+PTREL+ QI +  R      GVKV    GG  + +  R L+ GV ++V TPGR+ D+L R  +    IK   LDEAD
Sbjct:  180 LNENIRRCKYV----KPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIISGIMRSRPPPRSRGSRTAYPL----ALILSPTRELSVQIHEEARKFAYQTGVKVVVAYGGAPITQQLRELERGVEILVATPGRLMDLLERARVSLQMIKYLALDEAD 331          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH39_ORYSJ (DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica GN=Os01g0184500 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 54/165 (32.73%), Postives = 90/165 (54.55%), Query Frame = 3
Query:  237 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL--DYGLV-------QCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            EV DSF+ +GL E ++  +   G  KP+ IQ  G+     G  V+  + +G+GKT  +   ++Q L  D  ++       + +A+VL PTREL +Q+ +V +++  +   +     GG+ +R  +  L   V +VVGTPGR+ D ++  ++    IK  VLDEAD
Sbjct:  107 EVVDSFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLVQLLRRDEAMLGMSMKPRRPRAVVLCPTRELTEQVFRVAKSISHHARFRSTMVSGGSRIRPQEDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEAD 271          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: PRP5_CRYNE (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Cryptococcus neoformans GN=PRP5 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 57/160 (35.62%), Postives = 87/160 (54.37%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLD-----YGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIK---MFVLDEAD 704
            ++ A GL +  L  I   G+E P++IQ + I     G DVI  A++G+GKT  F   +L+ +       G     A+V++PTRELA QI K  +     L ++   CVGG+S+ ED   ++ G  VV+ TPGR+ D+L   + R   ++     V+DEAD
Sbjct:  404 NWGAFGLPQGCLDVIKHQGWETPTSIQAQAIPAIMSGRDVIGIAKTGSGKTVAFLLPMLRHVRDQRPVSGSEGPIAVVMSPTRELASQIYKECQPFLKVLNIRASCCVGGSSISEDIAAMKKGAEVVICTPGRMIDLLTANNGRVTNVRRTTYIVMDEAD 563          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: HAS1_CHAGB (ATP-dependent RNA helicase HAS1 OS=Chaetomium globosum GN=HAS1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 57/170 (33.53%), Postives = 87/170 (51.18%), Query Frame = 3
Query:  207 DGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQ----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            DG     S      +F  + L +  +  I   GF K + IQ+RGI P   G DV+  A++G+GKT  F    ++ L+    + +     +V+ PTRELA QI  V R L           +GG ++R ++  L  GV++++ TPGR+ D LRR S     +K  ++DEAD
Sbjct:   99 DGSLLGPSVSTDAQAFSELNLSDKTMMSINEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLNSLRFKPRNGTGVIVVTPTRELALQIFGVARELMKNHSQTYGVVIGGANIRAEEDKLGKGVNLLIATPGRLLDHLRRGSFVFKNLKSLIIDEAD 268          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX25_RAT (ATP-dependent RNA helicase DDX25 OS=Rattus norvegicus GN=Ddx25 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 58/156 (37.18%), Postives = 91/156 (58.33%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDY-LGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFD-MLRRQSLRPDYIKMFVLDEAD 704
            +F+ + L+E LL+GIYA GF +PS IQ+  +         ++I Q+QSGTGKTA F   +L +++   +  Q L LAPT ELA Q  +V+  +G + + V+V   + G  +     + +    +V+GTPG V D   +R+ +    I++FVLDEAD
Sbjct:   98 TFEELRLKEELLKGIYAMGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLNRVNALELFPQCLCLAPTYELALQTGRVVERMGKFCVDVEVMYAIRGNRIPRGTDVTK---QIVIGTPGTVLDWCFKRKLIDLTKIRVFVLDEAD 250          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP10_COCIM (ATP-dependent RNA helicase DBP10 OS=Coccidioides immitis GN=DBP10 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 56/153 (36.60%), Postives = 82/153 (53.59%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL--VQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F AMGL  NLL+ I   GF  P+ IQ++ I       DV+  A++G+GKTA F   ++++L      V  + L+L+P+RELA Q  KV++ LG    +K    VGG S+ E    +     +++ TPGR   +    +L    IK  V DEAD
Sbjct:   83 FQAMGLNANLLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIPMIEKLKSHSTKVGSRGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGYMAGNPDIIIATPGRFLHLKVEMNLDLSSIKYVVFDEAD 235          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP10_ASPTN (ATP-dependent RNA helicase dbp10 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dbp10 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 55/153 (35.95%), Postives = 83/153 (54.25%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQ--CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F AMGL  NLL+ I   GF  P+ IQ++ I       DV+  A++G+GKTA F   ++++L     +   + L+L+P+RELA Q  KV++ LG    +K    VGG S+ E   ++     +V+ TPGR   +    +L    I+  V DEAD
Sbjct:   91 FQAMGLNANLLKAITRKGFSVPTPIQRKTIPVIMDDRDVVGMARTGSGKTAAFVIPMIEKLKSHSSKFGARGLILSPSRELALQTLKVVKELGKGTDLKSVLLVGGDSLEEQFGMMAGNPDIVIATPGRFLHLKVEMNLDLSSIRYVVFDEAD 243          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_GIBZE (ATP-dependent rRNA helicase RRP3 OS=Gibberella zeae GN=RRP3 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17
Identity = 58/163 (35.58%), Postives = 85/163 (52.15%), Query Frame = 3
Query:  225 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ---SLRPDYIKMFVLDEAD 704
            T+ D    +F  +G+ + L        ++ P+ IQ++ I    +G D+I  A++G+GKTA F   +LQ L         LVLAPTRELA QI +   ALG  + ++    VGG  +      L    H+VV TPGR+ D L +    SLR   +K  ++DEAD
Sbjct:   53 TAVDAPKKTFKDLGVNDALCEACEKLNYKYPTPIQEKSIPVALQGRDIIGLAETGSGKTAAFALPVLQALLDKPQPLFGLVLAPTRELATQIGQAFEALGSLISLRCAVIVGGLDMVPQAIALGKKPHIVVATPGRLVDHLEKTKGFSLRT--LKYLIMDEAD 213          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_HAES2 (ATP-dependent RNA helicase rhlB OS=Haemophilus somnus (strain 2336) GN=rhlB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17
Identity = 55/156 (35.26%), Postives = 80/156 (51.28%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-----GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F  + L   + + I   GFE  + IQ   +    KG D+  QAQ+GTGKT  F +     L          Q +AL+LAPTREL  QI      L    G+K     GG    +  +++  G+ +++GT GRV D +++  +R DYI++ VLDEAD
Sbjct:   11 FSDLALHRIVQQAIKEKGFEFCTPIQALSLPITLKGQDIAGQAQTGTGKTIAFLTATFHHLLQKNNINSSEQPRALILAPTRELVVQIANDANFLVQATGLKTGLAYGGEGYDKQLKVIDRGIDILIGTTGRVIDYVKQGIIRLDYIQVVVLDEAD 166          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH28_ORYSJ (DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa subsp. japonica GN=Os12g0481100 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17
Identity = 62/193 (32.12%), Postives = 98/193 (50.78%), Query Frame = 3
Query:  147 EGSQFDARQYDTKMNELLSTDGQDFFTSYDEVY---DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQA---LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 704
            EG +  A + +    +    D   FF S +      +SF  + L   LLR   A G++KP+ IQ   I     G D+   A +G+GKTA F   +L++L +   +  A   L+L PTRELA Q+  ++  L  +  ++    VGG S +  +  L++   +VV TPGR+ D LR   S+  + + + +LDEAD
Sbjct:  158 EGDEEAAEEEEETDKKSGVVDPSKFFASSEGASFHANSFLELNLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERLLFRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRSMPDIVVATPGRIIDHLRNSLSVGLEDLAILILDEAD 350          
The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH52B_ORYSJ1.616e-1738.13DEAD-box ATP-dependent RNA helicase 52B OS=Oryza s... [more]
RH39_ORYSJ1.616e-1732.73DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sa... [more]
PRP5_CRYNE1.616e-1735.63Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
HAS1_CHAGB1.616e-1733.53ATP-dependent RNA helicase HAS1 OS=Chaetomium glob... [more]
DDX25_RAT1.616e-1737.18ATP-dependent RNA helicase DDX25 OS=Rattus norvegi... [more]
DBP10_COCIM1.616e-1736.60ATP-dependent RNA helicase DBP10 OS=Coccidioides i... [more]
DBP10_ASPTN1.616e-1735.95ATP-dependent RNA helicase dbp10 OS=Aspergillus te... [more]
RRP3_GIBZE2.110e-1735.58ATP-dependent rRNA helicase RRP3 OS=Gibberella zea... [more]
RHLB_HAES22.110e-1735.26ATP-dependent RNA helicase rhlB OS=Haemophilus som... [more]
RH28_ORYSJ2.110e-1732.12DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bp
GCAGGCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCAATC
TTCTCCTTCTCTTTGAAAAAAAAAAGAAAACCAACTCTTTCTCTCCATTT
TAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAG
GATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGCTC
TCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAG
TTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCTT
ATGGGTTTGAGAAGCCTTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTC
TGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAAC
AGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCC
AATGTCAGGCCCTGGTGTTGGCACCCACTAGGGAACTAGCTCAACAAATT
GAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGC
TTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCTG
GTGTTCATGTTGTTGTTGGCACTCCTGGTCGTGTGTTTGACATGCTGCGC
CGACAGTCTTTACGCCCTGATTACATTAAGATGTTTGTACTGGATGAGGC
TGATGAAAT
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