CN189435
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: PRP28_CRYNE (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Cryptococcus neoformans GN=PRP28 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17 Identity = 57/154 (37.01%), Postives = 84/154 (54.55%), Query Frame = 3 Query: 267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL--------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 + +L I G+++PS IQ++ I + D+I A++G+GKTA F +L + D + AL++APTRELAQQIE R LG K + VGG SV E Q L+ G +++ TPGR+ DM+ + L + V+DEAD Sbjct: 322 IPSQILDIIEEIGYKEPSPIQRQAIPIGMQNRDLIGVAKTGSGKTAAFVIPMLDYIGHLPPLNDDNRHLGPYALIMAPTRELAQQIETETRRFALPLGYKCVSIVGGRSVEEQQFALRDGAEIIIATPGRLKDMVDKSILVMSQCRYVVMDEAD 475
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX42_DICDI (Probable ATP-dependent RNA helicase ddx42 OS=Dictyostelium discoideum GN=ddx42 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17 Identity = 60/159 (37.74%), Postives = 87/159 (54.72%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC----SGILQQ--LDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 SF G + LL+ I E P+ IQ++ I G D+I A++G+GKTATF S I+ Q L+ G AL LAPTRELA QI Y +K GG S ++ + L+AG ++V TPGR+ DM++ ++ + + + VLDEAD+ Sbjct: 306 SFGHYGFDDILLQAIAKQSIETPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSISHIMDQPYLEKGDGPI-ALFLAPTRELAHQIYLETLKYSKYFKLKTTVLYGGVSKQQQCKELKAGCEIIVATPGRLIDMIKLKATKLNRVSYLVLDEADK 463
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP2_NEOFI (ATP-dependent RNA helicase dbp2 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp2 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17 Identity = 55/158 (34.81%), Postives = 80/158 (50.63%), Query Frame = 3 Query: 246 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQA-----LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 ++FD G + +L + A GFE+P+AIQ +G G DV+ A++G+GKT T+C + ++ + L+LAPTRELA QI+ + G ++ GG R L GV V + TPGR+ DML + VLDEAD Sbjct: 119 ENFDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQTEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEAD 276
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP2_ASPFU (ATP-dependent RNA helicase dbp2 OS=Aspergillus fumigatus GN=dbp2 PE=3 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17 Identity = 55/158 (34.81%), Postives = 80/158 (50.63%), Query Frame = 3 Query: 246 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQA-----LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 ++FD G + +L + A GFE+P+AIQ +G G DV+ A++G+GKT T+C + ++ + L+LAPTRELA QI+ + G ++ GG R L GV V + TPGR+ DML + VLDEAD Sbjct: 121 ENFDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEAD 278
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP10_MAGGR (ATP-dependent RNA helicase DBP10 OS=Magnaporthe grisea GN=DBP10 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17 Identity = 54/153 (35.29%), Postives = 82/153 (53.59%), Query Frame = 3 Query: 252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL--DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 F AMGL +LL+ I GF P+ IQ++ I DV+ A++G+GKTA F ++++L V +AL+++P+RELA Q KV++ G +K VGG S+ + + +++ TPGR + SL IK V DEAD Sbjct: 92 FQAMGLNPSLLQAITRKGFAVPTPIQRKSIPLILDRRDVVGMARTGSGKTAAFVIPMIERLRAHSARVGARALIMSPSRELALQTLKVVKEFGKGTDLKTVLLVGGDSLEDQFGFMTTNPDIIIATPGRFLHLKVEMSLDLSSIKYVVFDEAD 244
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: SUB2_ASPTN (ATP-dependent RNA helicase sub2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=sub2 PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17 Identity = 68/181 (37.57%), Postives = 96/181 (53.04%), Query Frame = 3 Query: 183 KMNELLSTDGQ-DFFTSYDEVYDS-FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRIL---QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 K +L T G+ D SY ++ + F L+ LLR I GFE PS + I +DV+ QA+SG GKTA F L QL+ +C LV+ TRELA QI+ YL VK GGT +++D +L ++ ++VVGTPGR+ ++R + L +K FVLDE D+ Sbjct: 35 KTGDLTVTGGRSDKKGSYVGIHSTGFRDFLLKGELLRAITDCGFEHPSEVC---IPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDIEVLSNKESYPNIVVGTPGRLNALVREKKLSLRNVKAFVLDECDK 212
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_TOLAT (ATP-dependent RNA helicase rhlB OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=rhlB PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17 Identity = 55/159 (34.59%), Postives = 83/159 (52.20%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 +F +GL+ +L G+ A GF + IQ I G ++ QAQ+GTGKT F +G L + Q + L++APTRELA QI + + G K+ GG + +LQ GV +++GT GR+ D L++ + I++ VLDEAD Sbjct: 10 TFAELGLEPQVLAGVEAKGFHNCTPIQAETIPLLLTGKNIAGQAQTGTGKTIAFLAGTFNYLLTHSASAERRQNQPRVLIMAPTRELAVQIYNDAVPMSESCGFKMGLAYGGDGYDKQLAVLQEGVDLLIGTTGRIIDYLKQGIIDLGAIQVVVLDEAD 168
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH52C_ORYSJ (DEAD-box ATP-dependent RNA helicase 52C OS=Oryza sativa subsp. japonica GN=Os11g0599500 PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17 Identity = 65/208 (31.25%), Postives = 97/208 (46.63%), Query Frame = 3 Query: 132 AGLAPEGSQFDARQ-----YDTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-----------LVQCQ-ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 AG E FDA Q +D + + T G++ + L +N+ R Y +P+ +Q+ I G D++ AQ+G+GKTA FC I+ + G C AL+L+PTREL+ QI + R GV+V GG + + R L+ GV ++V TPGR+ D+L R + I+ LDEAD Sbjct: 116 AGAGDEPEVFDAHQNTGINFDAYEDIPVETSGREVPPPVGTFAEIDLGQALNDNIRRCKYV----RPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGPPAQRPQRGGMRTACPLALILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQSIRYLALDEAD 319
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH35B_ORYSJ (DEAD-box ATP-dependent RNA helicase 35B OS=Oryza sativa subsp. japonica GN=Os06g0697200 PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17 Identity = 53/166 (31.93%), Postives = 89/166 (53.61%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC-----SGILQQLDYGLVQCQA---LVLAPTRELAQQIEKVMRAL------GDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 SF + L E +LR + G EKP+ IQ +G+ G D+I A +G+GKT F + + +++ +V + L++ P+RELA+Q +V+ Y ++ C+GG +R +++ GVH+VV TPGR+ D+L ++ + D + LDEAD Sbjct: 174 SFGDLRLPEPILRALRGKGIEKPTPIQVQGLPVALSGRDMIGIAFTGSGKTLVFVLPLIMAALQEEILMPIVPGEGPFGLIVCPSRELARQTHEVIEMFLAPLMEAGYPEIRPLLCIGGVDMRTQMEVVKKGVHIVVATPGRLKDLLSKKKMNLDNCRYLTLDEAD 339
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_LODEL (ATP-dependent RNA helicase DRS1 OS=Lodderomyces elongisporus GN=DRS1 PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17 Identity = 50/156 (32.05%), Postives = 88/156 (56.41%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY--GLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 704 +F + L +L+ + GF P+ +Q I G D++ AQ+G+GKTA + I+++L Y +A++L PTRELA Q+ V R LG ++ + VGG S+++ ++ L+ +V+ TPGR+ D +R S + +++ ++DEAD Sbjct: 197 TFQELQLSRPILKSLQQLGFTVPTPVQASTIPIALLGKDIVASAQTGSGKTAAYLIPIIERLLYVKNSTSTKAIILTPTRELAIQVHDVGRKLGQFVSNLNFGMAVGGLSLKQQEQQLKTRPDIVIATPGRLIDHIRNSPSFSVEDVQVLIIDEAD 352 The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bpback to top |