CN189435

Overview
NameCN189435
Unique NameCN189435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: PRP28_CRYNE (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Cryptococcus neoformans GN=PRP28 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17
Identity = 57/154 (37.01%), Postives = 84/154 (54.55%), Query Frame = 3
Query:  267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL--------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            +   +L  I   G+++PS IQ++ I    +  D+I  A++G+GKTA F   +L  +        D   +   AL++APTRELAQQIE   R     LG K  + VGG SV E Q  L+ G  +++ TPGR+ DM+ +  L     +  V+DEAD
Sbjct:  322 IPSQILDIIEEIGYKEPSPIQRQAIPIGMQNRDLIGVAKTGSGKTAAFVIPMLDYIGHLPPLNDDNRHLGPYALIMAPTRELAQQIETETRRFALPLGYKCVSIVGGRSVEEQQFALRDGAEIIIATPGRLKDMVDKSILVMSQCRYVVMDEAD 475          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX42_DICDI (Probable ATP-dependent RNA helicase ddx42 OS=Dictyostelium discoideum GN=ddx42 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17
Identity = 60/159 (37.74%), Postives = 87/159 (54.72%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC----SGILQQ--LDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            SF   G  + LL+ I     E P+ IQ++ I     G D+I  A++G+GKTATF     S I+ Q  L+ G     AL LAPTRELA QI         Y  +K     GG S ++  + L+AG  ++V TPGR+ DM++ ++ + + +   VLDEAD+
Sbjct:  306 SFGHYGFDDILLQAIAKQSIETPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSISHIMDQPYLEKGDGPI-ALFLAPTRELAHQIYLETLKYSKYFKLKTTVLYGGVSKQQQCKELKAGCEIIVATPGRLIDMIKLKATKLNRVSYLVLDEADK 463          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP2_NEOFI (ATP-dependent RNA helicase dbp2 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp2 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17
Identity = 55/158 (34.81%), Postives = 80/158 (50.63%), Query Frame = 3
Query:  246 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQA-----LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            ++FD  G  + +L  + A GFE+P+AIQ +G      G DV+  A++G+GKT T+C   +  ++   +         L+LAPTRELA QI+  +   G    ++     GG       R L  GV V + TPGR+ DML         +   VLDEAD
Sbjct:  119 ENFDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQTEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEAD 276          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP2_ASPFU (ATP-dependent RNA helicase dbp2 OS=Aspergillus fumigatus GN=dbp2 PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17
Identity = 55/158 (34.81%), Postives = 80/158 (50.63%), Query Frame = 3
Query:  246 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQA-----LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            ++FD  G  + +L  + A GFE+P+AIQ +G      G DV+  A++G+GKT T+C   +  ++   +         L+LAPTRELA QI+  +   G    ++     GG       R L  GV V + TPGR+ DML         +   VLDEAD
Sbjct:  121 ENFDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEAD 278          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP10_MAGGR (ATP-dependent RNA helicase DBP10 OS=Magnaporthe grisea GN=DBP10 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17
Identity = 54/153 (35.29%), Postives = 82/153 (53.59%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL--DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F AMGL  +LL+ I   GF  P+ IQ++ I       DV+  A++G+GKTA F   ++++L      V  +AL+++P+RELA Q  KV++  G    +K    VGG S+ +    +     +++ TPGR   +    SL    IK  V DEAD
Sbjct:   92 FQAMGLNPSLLQAITRKGFAVPTPIQRKSIPLILDRRDVVGMARTGSGKTAAFVIPMIERLRAHSARVGARALIMSPSRELALQTLKVVKEFGKGTDLKTVLLVGGDSLEDQFGFMTTNPDIIIATPGRFLHLKVEMSLDLSSIKYVVFDEAD 244          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: SUB2_ASPTN (ATP-dependent RNA helicase sub2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=sub2 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17
Identity = 68/181 (37.57%), Postives = 96/181 (53.04%), Query Frame = 3
Query:  183 KMNELLSTDGQ-DFFTSYDEVYDS-FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRIL---QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            K  +L  T G+ D   SY  ++ + F    L+  LLR I   GFE PS +    I      +DV+ QA+SG GKTA F    L QL+    +C  LV+  TRELA QI+        YL  VK     GGT +++D  +L   ++  ++VVGTPGR+  ++R + L    +K FVLDE D+
Sbjct:   35 KTGDLTVTGGRSDKKGSYVGIHSTGFRDFLLKGELLRAITDCGFEHPSEVC---IPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDIEVLSNKESYPNIVVGTPGRLNALVREKKLSLRNVKAFVLDECDK 212          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_TOLAT (ATP-dependent RNA helicase rhlB OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=rhlB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17
Identity = 55/159 (34.59%), Postives = 83/159 (52.20%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            +F  +GL+  +L G+ A GF   + IQ   I     G ++  QAQ+GTGKT  F +G    L       +    Q + L++APTRELA QI      + +  G K+    GG    +   +LQ GV +++GT GR+ D L++  +    I++ VLDEAD
Sbjct:   10 TFAELGLEPQVLAGVEAKGFHNCTPIQAETIPLLLTGKNIAGQAQTGTGKTIAFLAGTFNYLLTHSASAERRQNQPRVLIMAPTRELAVQIYNDAVPMSESCGFKMGLAYGGDGYDKQLAVLQEGVDLLIGTTGRIIDYLKQGIIDLGAIQVVVLDEAD 168          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH52C_ORYSJ (DEAD-box ATP-dependent RNA helicase 52C OS=Oryza sativa subsp. japonica GN=Os11g0599500 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17
Identity = 65/208 (31.25%), Postives = 97/208 (46.63%), Query Frame = 3
Query:  132 AGLAPEGSQFDARQ-----YDTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-----------LVQCQ-ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            AG   E   FDA Q     +D   +  + T G++         +      L +N+ R  Y     +P+ +Q+  I     G D++  AQ+G+GKTA FC  I+  +  G              C  AL+L+PTREL+ QI +  R      GV+V    GG  + +  R L+ GV ++V TPGR+ D+L R  +    I+   LDEAD
Sbjct:  116 AGAGDEPEVFDAHQNTGINFDAYEDIPVETSGREVPPPVGTFAEIDLGQALNDNIRRCKYV----RPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGPPAQRPQRGGMRTACPLALILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQSIRYLALDEAD 319          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH35B_ORYSJ (DEAD-box ATP-dependent RNA helicase 35B OS=Oryza sativa subsp. japonica GN=Os06g0697200 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17
Identity = 53/166 (31.93%), Postives = 89/166 (53.61%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC-----SGILQQLDYGLVQCQA---LVLAPTRELAQQIEKVMRAL------GDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            SF  + L E +LR +   G EKP+ IQ +G+     G D+I  A +G+GKT  F      + + +++   +V  +    L++ P+RELA+Q  +V+           Y  ++   C+GG  +R    +++ GVH+VV TPGR+ D+L ++ +  D  +   LDEAD
Sbjct:  174 SFGDLRLPEPILRALRGKGIEKPTPIQVQGLPVALSGRDMIGIAFTGSGKTLVFVLPLIMAALQEEILMPIVPGEGPFGLIVCPSRELARQTHEVIEMFLAPLMEAGYPEIRPLLCIGGVDMRTQMEVVKKGVHIVVATPGRLKDLLSKKKMNLDNCRYLTLDEAD 339          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_LODEL (ATP-dependent RNA helicase DRS1 OS=Lodderomyces elongisporus GN=DRS1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17
Identity = 50/156 (32.05%), Postives = 88/156 (56.41%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY--GLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 704
            +F  + L   +L+ +   GF  P+ +Q   I     G D++  AQ+G+GKTA +   I+++L Y       +A++L PTRELA Q+  V R LG ++  +     VGG S+++ ++ L+    +V+ TPGR+ D +R   S   + +++ ++DEAD
Sbjct:  197 TFQELQLSRPILKSLQQLGFTVPTPVQASTIPIALLGKDIVASAQTGSGKTAAYLIPIIERLLYVKNSTSTKAIILTPTRELAIQVHDVGRKLGQFVSNLNFGMAVGGLSLKQQEQQLKTRPDIVIATPGRLIDHIRNSPSFSVEDVQVLIIDEAD 352          
The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PRP28_CRYNE2.110e-1737.01Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
DDX42_DICDI2.110e-1737.74Probable ATP-dependent RNA helicase ddx42 OS=Dicty... [more]
DBP2_NEOFI2.110e-1734.81ATP-dependent RNA helicase dbp2 OS=Neosartorya fis... [more]
DBP2_ASPFU2.110e-1734.81ATP-dependent RNA helicase dbp2 OS=Aspergillus fum... [more]
DBP10_MAGGR2.110e-1735.29ATP-dependent RNA helicase DBP10 OS=Magnaporthe gr... [more]
SUB2_ASPTN2.756e-1737.57ATP-dependent RNA helicase sub2 OS=Aspergillus ter... [more]
RHLB_TOLAT2.756e-1734.59ATP-dependent RNA helicase rhlB OS=Tolumonas auens... [more]
RH52C_ORYSJ2.756e-1731.25DEAD-box ATP-dependent RNA helicase 52C OS=Oryza s... [more]
RH35B_ORYSJ2.756e-1731.93DEAD-box ATP-dependent RNA helicase 35B OS=Oryza s... [more]
DRS1_LODEL2.756e-1732.05ATP-dependent RNA helicase DRS1 OS=Lodderomyces el... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bp
GCAGGCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCAATC
TTCTCCTTCTCTTTGAAAAAAAAAAGAAAACCAACTCTTTCTCTCCATTT
TAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAG
GATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGCTC
TCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAG
TTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCTT
ATGGGTTTGAGAAGCCTTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTC
TGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAAC
AGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCC
AATGTCAGGCCCTGGTGTTGGCACCCACTAGGGAACTAGCTCAACAAATT
GAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGC
TTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCTG
GTGTTCATGTTGTTGTTGGCACTCCTGGTCGTGTGTTTGACATGCTGCGC
CGACAGTCTTTACGCCCTGATTACATTAAGATGTTTGTACTGGATGAGGC
TGATGAAAT
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