CN189435

Overview
NameCN189435
Unique NameCN189435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP2_EMENI (ATP-dependent RNA helicase dbp2 OS=Emericella nidulans GN=dbp2 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17
Identity = 55/158 (34.81%), Postives = 80/158 (50.63%), Query Frame = 3
Query:  246 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQA-----LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            ++FD  G  + +L  + A GFEKP+AIQ +G      G DV+  A++G+GKT ++C   +  ++   +         L+LAPTRELA QI+  +   G    ++     GG       R L  GV V + TPGR+ DML         +   VLDEAD
Sbjct:  140 ETFDEAGFPQYVLSEVKAQGFEKPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEAD 297          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_NEUCR (ATP-dependent rRNA helicase rrp-3 OS=Neurospora crassa GN=rrp-3 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 62/191 (32.46%), Postives = 96/191 (50.26%), Query Frame = 3
Query:  141 APEGSQFDARQYDTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ---SLRPDYIKMFVLDEAD 704
            APE ++      ++   + ++ D        + V  +F  +G+ + L       G++ P+ IQ++ I    +  D+I  A++G+GKTA F   ILQ L        ALVLAPTRELA QI +   ALG  + ++    +GG  +      L    HV+V TPGR+ D L +    SLR   ++  V+DEAD
Sbjct:   55 APEPAEESTPATNSTEEDSVTLDVAPEQEEVETVKKTFKDLGIVDALCEACERLGYKNPTPIQEQSIPLALQNRDIIGIAETGSGKTAAFALPILQALLDKPAPLFALVLAPTRELAAQIAQAFEALGSLISLRCALILGGMDMVTQAIALGKKPHVIVATPGRLLDHLEKTKGFSLRS--MQYLVMDEAD 243          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_CHAGB (ATP-dependent rRNA helicase RRP3 OS=Chaetomium globosum GN=RRP3 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 59/155 (38.06%), Postives = 84/155 (54.19%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ---SLRPDYIKMFVLDEAD 704
            +F  +G+ ++L       G++KP+ IQQ  I    +  D+I  A++G+GKT  F   ILQ L        ALVLAPTRELA QI +   ALG  + ++    +GG  + +    L    HVVV TPGR+ D L +    SLR   ++  V+DEAD
Sbjct:   66 TFQDLGIVDSLCDACKELGWKKPTPIQQESIPLALQDRDIIGLAETGSGKTGAFALPILQALLDKPQPLFALVLAPTRELAAQIAQSFEALGSLISLRCALILGGLDMVQQAIALGKKPHVVVATPGRLLDHLEKTKGFSLR--NLRYLVMDEAD 218          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_AERHH (ATP-dependent RNA helicase rhlB OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=rhlB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 53/160 (33.12%), Postives = 84/160 (52.50%), Query Frame = 3
Query:  246 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            D F  MGL+  +L G+ + GF   + IQ   +    +G D+  QAQ+GTGKT  F +     L          + Q +A+++APTRELA QI     ++    G+K+    GG    +   +L+ GV +++GT GR+ D  + + +    I++ VLDEAD
Sbjct:    9 DKFAQMGLEPEVLAGLESKGFHYCTPIQALSLPLLVEGHDLAGQAQTGTGKTLAFLAATFNYLLTHPLTKPRLINQPRAIIMAPTRELAVQIYNDAESMSASTGLKLGLAYGGEGYDKQLAVLEQGVDILIGTTGRIIDYFKSKVIDLSNIQVVVLDEAD 168          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX47_CAEEL (Putative ATP-dependent RNA helicase T26G10.1 OS=Caenorhabditis elegans GN=T26G10.1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 56/153 (36.60%), Postives = 77/153 (50.33%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEAD 704
            SF  +G+ + L       G+ KPS IQQ  +    +G DVI  A++G+GKT  F   +LQ L         LVL PTRELA QI +   ALG  +G+     VGG  +      L    H++V TPGR+ D L   +      +K  ++DEAD
Sbjct:   45 SFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHPQAFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEAD 197          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP2_ASPCL (ATP-dependent RNA helicase dbp2 OS=Aspergillus clavatus GN=dbp2 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 55/158 (34.81%), Postives = 80/158 (50.63%), Query Frame = 3
Query:  246 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQA-----LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            ++FD  G  + +L  + + GFE+P+AIQ +G      G DV+  A++G+GKT T+C   +  ++   +         LVLAPTRELA QI+  +   G    ++     GG       R L  GV V + TPGR+ DML         +   VLDEAD
Sbjct:  125 ETFDEAGFPQYVLSEVKSQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEAD 282          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP10_GIBZE (ATP-dependent RNA helicase DBP10 OS=Gibberella zeae GN=DBP10 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 55/153 (35.95%), Postives = 82/153 (53.59%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQ--CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F AMGL  NLL+ I   GF  P+ IQ++ I       D++  A++G+GKTA F   ++++L     +   +AL+++P+RELA Q  KV++       +K    VGG S+ E    + A   +V+ TPGR   +    SL    IK  V DEAD
Sbjct:   84 FQAMGLNNNLLKAITRKGFSVPTPIQRKAIPLILDRKDLVGMARTGSGKTAAFVIPMIEKLRAHSARFGTRALIMSPSRELAIQTLKVVKEFSRGTDLKCVLLVGGDSLEEQFGYMAANPDIVIATPGRFLHLKVEMSLDLSSIKYVVFDEAD 236          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_SHEDO (ATP-dependent RNA helicase rhlB OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=rhlB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 55/158 (34.81%), Postives = 81/158 (51.27%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F  + L   +++ +   GFE  + IQ   +    K  D+  QAQ+GTGKT  F       L          L Q +A+++APTRELA QI K    L  + G+KV    GG S    + +L  GV +++GT GR+ D +R+  +  + I+  VLDEAD
Sbjct:   11 FADLPLHAEVIQALNENGFEFCTPIQALSLPVLLKAKDIAGQAQTGTGKTMAFLVATFNHLLTTPAPQARELNQPRAIIMAPTRELAIQIAKDANLLAKHTGLKVGIVYGGESYEVQREVLDKGVDILIGTTGRIIDYVRQGVISLNSIQAVVLDEAD 168          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_SERP5 (ATP-dependent RNA helicase rhlB OS=Serratia proteamaculans (strain 568) GN=rhlB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 55/158 (34.81%), Postives = 81/158 (51.27%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F    L   +L  +   GF+  + IQ   +     G DV  QAQ+GTGKT  F +     L       D  + Q +AL++APTRELA QI     AL    G+K+    GG    +  ++L++GV ++VGT GR+ D  ++  +    I++ VLDEAD
Sbjct:   11 FSDFALHPLVLEALEKKGFQHCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLTSTFHYLLSHPAKQDRKINQPRALIMAPTRELAVQIHSDAEALSQSTGLKMGLAYGGDGYDKQLKVLESGVDILVGTTGRLIDYAKQNYIDLGAIQVVVLDEAD 168          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_PSEAE (ATP-dependent RNA helicase rhlB OS=Pseudomonas aeruginosa GN=rhlB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 58/159 (36.48%), Postives = 86/159 (54.09%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAG-VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F    L  +L+  I+  GF   + IQ + +    +G D I +AQ+GTGKTA F   I+ QL       +  + + +AL++APTREL  QI K   AL  Y G+ V   VGG    +  + L+A    ++V TPGR+ D  +R  +  D +++ VLDEAD
Sbjct:   11 FHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEAD 169          
The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP2_EMENI2.756e-1734.81ATP-dependent RNA helicase dbp2 OS=Emericella nidu... [more]
RRP3_NEUCR3.599e-1732.46ATP-dependent rRNA helicase rrp-3 OS=Neurospora cr... [more]
RRP3_CHAGB3.599e-1738.06ATP-dependent rRNA helicase RRP3 OS=Chaetomium glo... [more]
RHLB_AERHH3.599e-1733.13ATP-dependent RNA helicase rhlB OS=Aeromonas hydro... [more]
DDX47_CAEEL3.599e-1736.60Putative ATP-dependent RNA helicase T26G10.1 OS=Ca... [more]
DBP2_ASPCL3.599e-1734.81ATP-dependent RNA helicase dbp2 OS=Aspergillus cla... [more]
DBP10_GIBZE3.599e-1735.95ATP-dependent RNA helicase DBP10 OS=Gibberella zea... [more]
RHLB_SHEDO4.701e-1734.81ATP-dependent RNA helicase rhlB OS=Shewanella deni... [more]
RHLB_SERP54.701e-1734.81ATP-dependent RNA helicase rhlB OS=Serratia protea... [more]
RHLB_PSEAE4.701e-1736.48ATP-dependent RNA helicase rhlB OS=Pseudomonas aer... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bp
GCAGGCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCAATC
TTCTCCTTCTCTTTGAAAAAAAAAAGAAAACCAACTCTTTCTCTCCATTT
TAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAG
GATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGCTC
TCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAG
TTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCTT
ATGGGTTTGAGAAGCCTTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTC
TGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAAC
AGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCC
AATGTCAGGCCCTGGTGTTGGCACCCACTAGGGAACTAGCTCAACAAATT
GAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGC
TTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCTG
GTGTTCATGTTGTTGTTGGCACTCCTGGTCGTGTGTTTGACATGCTGCGC
CGACAGTCTTTACGCCCTGATTACATTAAGATGTTTGTACTGGATGAGGC
TGATGAAAT
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