CN189435
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP2_EMENI (ATP-dependent RNA helicase dbp2 OS=Emericella nidulans GN=dbp2 PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17 Identity = 55/158 (34.81%), Postives = 80/158 (50.63%), Query Frame = 3 Query: 246 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQA-----LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 ++FD G + +L + A GFEKP+AIQ +G G DV+ A++G+GKT ++C + ++ + L+LAPTRELA QI+ + G ++ GG R L GV V + TPGR+ DML + VLDEAD Sbjct: 140 ETFDEAGFPQYVLSEVKAQGFEKPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEAD 297
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_NEUCR (ATP-dependent rRNA helicase rrp-3 OS=Neurospora crassa GN=rrp-3 PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17 Identity = 62/191 (32.46%), Postives = 96/191 (50.26%), Query Frame = 3 Query: 141 APEGSQFDARQYDTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ---SLRPDYIKMFVLDEAD 704 APE ++ ++ + ++ D + V +F +G+ + L G++ P+ IQ++ I + D+I A++G+GKTA F ILQ L ALVLAPTRELA QI + ALG + ++ +GG + L HV+V TPGR+ D L + SLR ++ V+DEAD Sbjct: 55 APEPAEESTPATNSTEEDSVTLDVAPEQEEVETVKKTFKDLGIVDALCEACERLGYKNPTPIQEQSIPLALQNRDIIGIAETGSGKTAAFALPILQALLDKPAPLFALVLAPTRELAAQIAQAFEALGSLISLRCALILGGMDMVTQAIALGKKPHVIVATPGRLLDHLEKTKGFSLRS--MQYLVMDEAD 243
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_CHAGB (ATP-dependent rRNA helicase RRP3 OS=Chaetomium globosum GN=RRP3 PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17 Identity = 59/155 (38.06%), Postives = 84/155 (54.19%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ---SLRPDYIKMFVLDEAD 704 +F +G+ ++L G++KP+ IQQ I + D+I A++G+GKT F ILQ L ALVLAPTRELA QI + ALG + ++ +GG + + L HVVV TPGR+ D L + SLR ++ V+DEAD Sbjct: 66 TFQDLGIVDSLCDACKELGWKKPTPIQQESIPLALQDRDIIGLAETGSGKTGAFALPILQALLDKPQPLFALVLAPTRELAAQIAQSFEALGSLISLRCALILGGLDMVQQAIALGKKPHVVVATPGRLLDHLEKTKGFSLR--NLRYLVMDEAD 218
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_AERHH (ATP-dependent RNA helicase rhlB OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=rhlB PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17 Identity = 53/160 (33.12%), Postives = 84/160 (52.50%), Query Frame = 3 Query: 246 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 D F MGL+ +L G+ + GF + IQ + +G D+ QAQ+GTGKT F + L + Q +A+++APTRELA QI ++ G+K+ GG + +L+ GV +++GT GR+ D + + + I++ VLDEAD Sbjct: 9 DKFAQMGLEPEVLAGLESKGFHYCTPIQALSLPLLVEGHDLAGQAQTGTGKTLAFLAATFNYLLTHPLTKPRLINQPRAIIMAPTRELAVQIYNDAESMSASTGLKLGLAYGGEGYDKQLAVLEQGVDILIGTTGRIIDYFKSKVIDLSNIQVVVLDEAD 168
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX47_CAEEL (Putative ATP-dependent RNA helicase T26G10.1 OS=Caenorhabditis elegans GN=T26G10.1 PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17 Identity = 56/153 (36.60%), Postives = 77/153 (50.33%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEAD 704 SF +G+ + L G+ KPS IQQ + +G DVI A++G+GKT F +LQ L LVL PTRELA QI + ALG +G+ VGG + L H++V TPGR+ D L + +K ++DEAD Sbjct: 45 SFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHPQAFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEAD 197
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP2_ASPCL (ATP-dependent RNA helicase dbp2 OS=Aspergillus clavatus GN=dbp2 PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17 Identity = 55/158 (34.81%), Postives = 80/158 (50.63%), Query Frame = 3 Query: 246 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQA-----LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 ++FD G + +L + + GFE+P+AIQ +G G DV+ A++G+GKT T+C + ++ + LVLAPTRELA QI+ + G ++ GG R L GV V + TPGR+ DML + VLDEAD Sbjct: 125 ETFDEAGFPQYVLSEVKSQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEAD 282
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP10_GIBZE (ATP-dependent RNA helicase DBP10 OS=Gibberella zeae GN=DBP10 PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17 Identity = 55/153 (35.95%), Postives = 82/153 (53.59%), Query Frame = 3 Query: 252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQ--CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 F AMGL NLL+ I GF P+ IQ++ I D++ A++G+GKTA F ++++L + +AL+++P+RELA Q KV++ +K VGG S+ E + A +V+ TPGR + SL IK V DEAD Sbjct: 84 FQAMGLNNNLLKAITRKGFSVPTPIQRKAIPLILDRKDLVGMARTGSGKTAAFVIPMIEKLRAHSARFGTRALIMSPSRELAIQTLKVVKEFSRGTDLKCVLLVGGDSLEEQFGYMAANPDIVIATPGRFLHLKVEMSLDLSSIKYVVFDEAD 236
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_SHEDO (ATP-dependent RNA helicase rhlB OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=rhlB PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17 Identity = 55/158 (34.81%), Postives = 81/158 (51.27%), Query Frame = 3 Query: 252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 F + L +++ + GFE + IQ + K D+ QAQ+GTGKT F L L Q +A+++APTRELA QI K L + G+KV GG S + +L GV +++GT GR+ D +R+ + + I+ VLDEAD Sbjct: 11 FADLPLHAEVIQALNENGFEFCTPIQALSLPVLLKAKDIAGQAQTGTGKTMAFLVATFNHLLTTPAPQARELNQPRAIIMAPTRELAIQIAKDANLLAKHTGLKVGIVYGGESYEVQREVLDKGVDILIGTTGRIIDYVRQGVISLNSIQAVVLDEAD 168
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_SERP5 (ATP-dependent RNA helicase rhlB OS=Serratia proteamaculans (strain 568) GN=rhlB PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17 Identity = 55/158 (34.81%), Postives = 81/158 (51.27%), Query Frame = 3 Query: 252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 F L +L + GF+ + IQ + G DV QAQ+GTGKT F + L D + Q +AL++APTRELA QI AL G+K+ GG + ++L++GV ++VGT GR+ D ++ + I++ VLDEAD Sbjct: 11 FSDFALHPLVLEALEKKGFQHCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLTSTFHYLLSHPAKQDRKINQPRALIMAPTRELAVQIHSDAEALSQSTGLKMGLAYGGDGYDKQLKVLESGVDILVGTTGRLIDYAKQNYIDLGAIQVVVLDEAD 168
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_PSEAE (ATP-dependent RNA helicase rhlB OS=Pseudomonas aeruginosa GN=rhlB PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17 Identity = 58/159 (36.48%), Postives = 86/159 (54.09%), Query Frame = 3 Query: 252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAG-VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 F L +L+ I+ GF + IQ + + +G D I +AQ+GTGKTA F I+ QL + + + +AL++APTREL QI K AL Y G+ V VGG + + L+A ++V TPGR+ D +R + D +++ VLDEAD Sbjct: 11 FHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEAD 169 The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bpback to top |