CN189435

Overview
NameCN189435
Unique NameCN189435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP2_GIBZE (ATP-dependent RNA helicase DBP2 OS=Gibberella zeae GN=DBP2 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.019e-17
Identity = 55/158 (34.81%), Postives = 79/158 (50.00%), Query Frame = 3
Query:  246 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQA-----LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            ++FD  G    ++  + A GF  P+AIQ +G      G DV+  A++G+GKT T+C   +  ++   +         LVLAPTRELA QI++ M+  G    ++     GG       R L  GV V + TPGR+ DML         +   VLDEAD
Sbjct:  134 ETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPSIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQEEMKKFGRSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEAD 291          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_ASPCL (ATP-dependent rRNA helicase rrp3 OS=Aspergillus clavatus GN=rrp3 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16
Identity = 59/155 (38.06%), Postives = 79/155 (50.97%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ---SLRPDYIKMFVLDEAD 704
            SF  +G+ + L       G++ P+ IQ   I    +  D+I  A++G+GKTA F   ILQ L         LVLAPTRELA QI +   ALG  + V+    VGG  +      L    H++V TPGR+ D L      SLR   +K  V+DEAD
Sbjct:   54 SFKDLGIIDQLCEACATMGYKAPTPIQAESIPLALQDRDLIGLAETGSGKTAAFALPILQALMDKPQSFFGLVLAPTRELAFQISQSFEALGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPGRLLDHLENTKGFSLRT--LKYLVMDEAD 206          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH29_ORYSJ (DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa subsp. japonica GN=Os08g0416100 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16
Identity = 53/155 (34.19%), Postives = 85/155 (54.84%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL---DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGR-VFDMLRRQSLRPDYIKMFVLDEAD 704
            F++MGL E + RG+   G+  P+ IQ++ +     G D+   A++G+GKTA F   ++Q+L   D G    +AL+L+PTR+LA Q  K  + LG +  +K+   VGG S+      L     +++ TPGR V  +   + L    ++  V DEAD
Sbjct:   51 FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQRLRRHDAG-AGIRALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGDSMESQFEELAENPDIIIATPGRLVHHLAEVEDLNLRTVEYVVFDEAD 204          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH29_ORYSI (DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa subsp. indica GN=OsI_028228 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16
Identity = 53/155 (34.19%), Postives = 85/155 (54.84%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL---DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGR-VFDMLRRQSLRPDYIKMFVLDEAD 704
            F++MGL E + RG+   G+  P+ IQ++ +     G D+   A++G+GKTA F   ++Q+L   D G    +AL+L+PTR+LA Q  K  + LG +  +K+   VGG S+      L     +++ TPGR V  +   + L    ++  V DEAD
Sbjct:   51 FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQRLRRHDAG-AGIRALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGDSMESQFEELAENPDIIIATPGRLVHHLAEVEDLNLRTVEYVVFDEAD 204          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: HAS1_PICGU (ATP-dependent RNA helicase HAS1 OS=Pichia guilliermondii GN=HAS1 PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16
Identity = 68/210 (32.38%), Postives = 107/210 (50.95%), Query Frame = 3
Query:  114 QSFADMAGLAPEGSQFD----ARQYDTKMNELLSTDGQDFFTSYDEVY---DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV-----QCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEAD 704
            Q+F D+A L  +G   D     +Q   K  + +S +    +   DE     D F+ +GL E  +R I   GFEK + +Q++ I P   G DV+  A++G+GKT  F    ++ L Y L          +V++PTRELA QI  V R L  +    +   +GG + R++   L  GV++++ TPGR+ D L+  +      +K  V+DEAD
Sbjct:   55 QNFDDVAELL-DGDVADFKEEKKQKKNKEPKTVSENALQPYAQADESTSGSDKFEDLGLSEPTMRAIKDMGFEKMTKVQEKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEML-YSLKFKPRNGTGVIVVSPTRELALQIFGVARDLMAHHSQTLGIVIGGANRRQEADKLMKGVNLLIATPGRLLDHLQNTKGFIFKNLKALVIDEAD 262          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX25_HUMAN (ATP-dependent RNA helicase DDX25 OS=Homo sapiens GN=DDX25 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16
Identity = 57/156 (36.54%), Postives = 90/156 (57.69%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDY-LGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFD-MLRRQSLRPDYIKMFVLDEAD 704
            +F+ + L+E LL+GIYA GF +PS IQ+  +         ++I Q+QSGTGKTA F   +L +++   +  Q L LAPT ELA Q  +V+  +G + + V+V   + G  +     I +    +++GTPG V D   + + +    I++FVLDEAD
Sbjct:   98 TFEELRLKEELLKGIYAMGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQCLCLAPTYELALQTGRVVEQMGKFCVDVQVMYAIRGNRIPRGTDITK---QIIIGTPGTVLDWCFKLKLIDLTKIRVFVLDEAD 250          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX23_HUMAN (Probable ATP-dependent RNA helicase DDX23 OS=Homo sapiens GN=DDX23 PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16
Identity = 61/165 (36.97%), Postives = 90/165 (54.55%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL------------QQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI-LQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            S+    L  ++L  I   G+++P+ IQ++ I    +  D+I  A++G+GKTA F   +L            ++ D G     A++LAPTRELAQQIE+     G  LG++  A +GG S REDQ   L+ G  +V+ TPGR+ D+L  + L        VLDEAD
Sbjct:  392 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPY---AIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGIS-REDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEAD 552          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP4_EMENI (ATP-dependent RNA helicase dbp4 OS=Emericella nidulans GN=dbp4 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16
Identity = 61/162 (37.65%), Postives = 93/162 (57.41%), Query Frame = 3
Query:  243 YDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL------DY-GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDY-IKMFVLDEAD 704
            Y+SF  + + E  L G+ +  F+  + IQ R I    KG DV+  A++G+GKT  F   IL+ L      D+ GL    AL+++PTRELA QI +V+R +G Y        +GG S++E+Q  L   ++++V TPGR+   L + +    Y ++M VLDEAD
Sbjct:   47 YESFSDLPISEPTLSGLTSSHFKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPILENLYRKQWSDHDGL---GALIISPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLKEEQERL-GRMNILVCTPGRMLQHLDQTAFFETYNLQMLVLDEAD 204          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP2_YARLI (ATP-dependent RNA helicase DBP2 OS=Yarrowia lipolytica GN=DBP2 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16
Identity = 56/157 (35.67%), Postives = 79/157 (50.32%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQA-----LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            +FD  G    +L+ +   GFEKP+AIQ +G      G DVI  A +G+GKT ++C   +  ++   +         LVLAPTRELA QI++     G    ++     GG    +  R L  GV +V+ TPGR+ DML         +   VLDEAD
Sbjct:  117 NFDEAGFPPYVLKEVKQQGFEKPTAIQCQGWPMALTGRDVIGIASTGSGKTLSYCLPAIVHINAQPMLSHGDGPIVLVLAPTRELAVQIQQECSKFGKSSKIRNTCVYGGVPRGQQIRDLARGVEIVIATPGRLLDMLESGKTNLRRVTYLVLDEAD 273          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_SHESH (ATP-dependent RNA helicase rhlB OS=Shewanella sediminis (strain HAW-EB3) GN=rhlB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 55/158 (34.81%), Postives = 79/158 (50.00%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F    LQ  +   +   GFE  + IQ   +    +  D+  QAQ+GTGKT  F       L          L Q +A+++APTRELA QI K    L  + G+KV    GG S    +++L  GV +++GT GR+ D +R+  +    I+  VLDEAD
Sbjct:   11 FADFSLQTEIKTALNESGFEYCTPIQALSLPILLQKKDIAGQAQTGTGKTLAFLVATFNHLLTTPIPEGRQLNQPRAIIMAPTRELAIQIAKDADLLAKHTGLKVGIVYGGESYEVQRKVLDKGVDILIGTTGRIIDYVRQGIINVSAIQAVVLDEAD 168          
The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP2_GIBZE8.019e-1734.81ATP-dependent RNA helicase DBP2 OS=Gibberella zeae... [more]
RRP3_ASPCL1.047e-1638.06ATP-dependent rRNA helicase rrp3 OS=Aspergillus cl... [more]
RH29_ORYSJ1.047e-1634.19DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sa... [more]
RH29_ORYSI1.047e-1634.19DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sa... [more]
HAS1_PICGU1.047e-1632.38ATP-dependent RNA helicase HAS1 OS=Pichia guillier... [more]
DDX25_HUMAN1.047e-1636.54ATP-dependent RNA helicase DDX25 OS=Homo sapiens G... [more]
DDX23_HUMAN1.047e-1636.97Probable ATP-dependent RNA helicase DDX23 OS=Homo ... [more]
DBP4_EMENI1.047e-1637.65ATP-dependent RNA helicase dbp4 OS=Emericella nidu... [more]
DBP2_YARLI1.047e-1635.67ATP-dependent RNA helicase DBP2 OS=Yarrowia lipoly... [more]
RHLB_SHESH1.368e-1634.81ATP-dependent RNA helicase rhlB OS=Shewanella sedi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bp
GCAGGCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCAATC
TTCTCCTTCTCTTTGAAAAAAAAAAGAAAACCAACTCTTTCTCTCCATTT
TAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAG
GATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGCTC
TCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAG
TTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCTT
ATGGGTTTGAGAAGCCTTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTC
TGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAAC
AGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCC
AATGTCAGGCCCTGGTGTTGGCACCCACTAGGGAACTAGCTCAACAAATT
GAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGC
TTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCTG
GTGTTCATGTTGTTGTTGGCACTCCTGGTCGTGTGTTTGACATGCTGCGC
CGACAGTCTTTACGCCCTGATTACATTAAGATGTTTGTACTGGATGAGGC
TGATGAAAT
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