CN189435
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP2_GIBZE (ATP-dependent RNA helicase DBP2 OS=Gibberella zeae GN=DBP2 PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 8.019e-17 Identity = 55/158 (34.81%), Postives = 79/158 (50.00%), Query Frame = 3 Query: 246 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQA-----LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 ++FD G ++ + A GF P+AIQ +G G DV+ A++G+GKT T+C + ++ + LVLAPTRELA QI++ M+ G ++ GG R L GV V + TPGR+ DML + VLDEAD Sbjct: 134 ETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPSIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQEEMKKFGRSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEAD 291
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_ASPCL (ATP-dependent rRNA helicase rrp3 OS=Aspergillus clavatus GN=rrp3 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16 Identity = 59/155 (38.06%), Postives = 79/155 (50.97%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ---SLRPDYIKMFVLDEAD 704 SF +G+ + L G++ P+ IQ I + D+I A++G+GKTA F ILQ L LVLAPTRELA QI + ALG + V+ VGG + L H++V TPGR+ D L SLR +K V+DEAD Sbjct: 54 SFKDLGIIDQLCEACATMGYKAPTPIQAESIPLALQDRDLIGLAETGSGKTAAFALPILQALMDKPQSFFGLVLAPTRELAFQISQSFEALGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPGRLLDHLENTKGFSLRT--LKYLVMDEAD 206
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH29_ORYSJ (DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa subsp. japonica GN=Os08g0416100 PE=2 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16 Identity = 53/155 (34.19%), Postives = 85/155 (54.84%), Query Frame = 3 Query: 252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL---DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGR-VFDMLRRQSLRPDYIKMFVLDEAD 704 F++MGL E + RG+ G+ P+ IQ++ + G D+ A++G+GKTA F ++Q+L D G +AL+L+PTR+LA Q K + LG + +K+ VGG S+ L +++ TPGR V + + L ++ V DEAD Sbjct: 51 FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQRLRRHDAG-AGIRALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGDSMESQFEELAENPDIIIATPGRLVHHLAEVEDLNLRTVEYVVFDEAD 204
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH29_ORYSI (DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa subsp. indica GN=OsI_028228 PE=2 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16 Identity = 53/155 (34.19%), Postives = 85/155 (54.84%), Query Frame = 3 Query: 252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL---DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGR-VFDMLRRQSLRPDYIKMFVLDEAD 704 F++MGL E + RG+ G+ P+ IQ++ + G D+ A++G+GKTA F ++Q+L D G +AL+L+PTR+LA Q K + LG + +K+ VGG S+ L +++ TPGR V + + L ++ V DEAD Sbjct: 51 FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQRLRRHDAG-AGIRALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGDSMESQFEELAENPDIIIATPGRLVHHLAEVEDLNLRTVEYVVFDEAD 204
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: HAS1_PICGU (ATP-dependent RNA helicase HAS1 OS=Pichia guilliermondii GN=HAS1 PE=3 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16 Identity = 68/210 (32.38%), Postives = 107/210 (50.95%), Query Frame = 3 Query: 114 QSFADMAGLAPEGSQFD----ARQYDTKMNELLSTDGQDFFTSYDEVY---DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV-----QCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEAD 704 Q+F D+A L +G D +Q K + +S + + DE D F+ +GL E +R I GFEK + +Q++ I P G DV+ A++G+GKT F ++ L Y L +V++PTRELA QI V R L + + +GG + R++ L GV++++ TPGR+ D L+ + +K V+DEAD Sbjct: 55 QNFDDVAELL-DGDVADFKEEKKQKKNKEPKTVSENALQPYAQADESTSGSDKFEDLGLSEPTMRAIKDMGFEKMTKVQEKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEML-YSLKFKPRNGTGVIVVSPTRELALQIFGVARDLMAHHSQTLGIVIGGANRRQEADKLMKGVNLLIATPGRLLDHLQNTKGFIFKNLKALVIDEAD 262
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX25_HUMAN (ATP-dependent RNA helicase DDX25 OS=Homo sapiens GN=DDX25 PE=1 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16 Identity = 57/156 (36.54%), Postives = 90/156 (57.69%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDY-LGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFD-MLRRQSLRPDYIKMFVLDEAD 704 +F+ + L+E LL+GIYA GF +PS IQ+ + ++I Q+QSGTGKTA F +L +++ + Q L LAPT ELA Q +V+ +G + + V+V + G + I + +++GTPG V D + + + I++FVLDEAD Sbjct: 98 TFEELRLKEELLKGIYAMGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQCLCLAPTYELALQTGRVVEQMGKFCVDVQVMYAIRGNRIPRGTDITK---QIIIGTPGTVLDWCFKLKLIDLTKIRVFVLDEAD 250
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX23_HUMAN (Probable ATP-dependent RNA helicase DDX23 OS=Homo sapiens GN=DDX23 PE=1 SV=3) HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16 Identity = 61/165 (36.97%), Postives = 90/165 (54.55%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL------------QQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI-LQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 S+ L ++L I G+++P+ IQ++ I + D+I A++G+GKTA F +L ++ D G A++LAPTRELAQQIE+ G LG++ A +GG S REDQ L+ G +V+ TPGR+ D+L + L VLDEAD Sbjct: 392 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPY---AIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGIS-REDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEAD 552
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP4_EMENI (ATP-dependent RNA helicase dbp4 OS=Emericella nidulans GN=dbp4 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16 Identity = 61/162 (37.65%), Postives = 93/162 (57.41%), Query Frame = 3 Query: 243 YDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL------DY-GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDY-IKMFVLDEAD 704 Y+SF + + E L G+ + F+ + IQ R I KG DV+ A++G+GKT F IL+ L D+ GL AL+++PTRELA QI +V+R +G Y +GG S++E+Q L ++++V TPGR+ L + + Y ++M VLDEAD Sbjct: 47 YESFSDLPISEPTLSGLTSSHFKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPILENLYRKQWSDHDGL---GALIISPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLKEEQERL-GRMNILVCTPGRMLQHLDQTAFFETYNLQMLVLDEAD 204
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP2_YARLI (ATP-dependent RNA helicase DBP2 OS=Yarrowia lipolytica GN=DBP2 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16 Identity = 56/157 (35.67%), Postives = 79/157 (50.32%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQA-----LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 +FD G +L+ + GFEKP+AIQ +G G DVI A +G+GKT ++C + ++ + LVLAPTRELA QI++ G ++ GG + R L GV +V+ TPGR+ DML + VLDEAD Sbjct: 117 NFDEAGFPPYVLKEVKQQGFEKPTAIQCQGWPMALTGRDVIGIASTGSGKTLSYCLPAIVHINAQPMLSHGDGPIVLVLAPTRELAVQIQQECSKFGKSSKIRNTCVYGGVPRGQQIRDLARGVEIVIATPGRLLDMLESGKTNLRRVTYLVLDEAD 273
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_SHESH (ATP-dependent RNA helicase rhlB OS=Shewanella sediminis (strain HAW-EB3) GN=rhlB PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16 Identity = 55/158 (34.81%), Postives = 79/158 (50.00%), Query Frame = 3 Query: 252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 F LQ + + GFE + IQ + + D+ QAQ+GTGKT F L L Q +A+++APTRELA QI K L + G+KV GG S +++L GV +++GT GR+ D +R+ + I+ VLDEAD Sbjct: 11 FADFSLQTEIKTALNESGFEYCTPIQALSLPILLQKKDIAGQAQTGTGKTLAFLVATFNHLLTTPIPEGRQLNQPRAIIMAPTRELAIQIAKDADLLAKHTGLKVGIVYGGESYEVQRKVLDKGVDILIGTTGRIIDYVRQGIINVSAIQAVVLDEAD 168 The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bpback to top |