CN189435
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_PROMH (ATP-dependent RNA helicase rhlB OS=Proteus mirabilis (strain HI4320) GN=rhlB PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16 Identity = 54/158 (34.18%), Postives = 80/158 (50.63%), Query Frame = 3 Query: 252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 F L ++ + GF + IQ + KG D+ QAQ+GTGKT F + L + Q +AL++APTRELA QI + L GVK+ GG E ++L GV +V+GT GR+ D +++ + + I++ VLDEAD Sbjct: 11 FSDFALHPKVIEALEKKGFSNCTQIQALTLPITVKGHDIAGQAQTGTGKTLAFLTSTFHYLLTHPAKEGHEKNQPRALIMAPTRELAVQIYTDAQPLAQSTGVKMGLAYGGDGYDEQLKVLNNGVDIVIGTTGRLIDYVKQGHINLNAIQVVVLDEAD 168
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH53_ORYSJ (DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp. japonica GN=Os07g0143700 PE=2 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16 Identity = 56/155 (36.13%), Postives = 85/155 (54.84%), Query Frame = 3 Query: 261 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 +G+ ++ + A G + IQ+ + P +G D+I +A++GTGKT F I+ ++ + A++LAPTRELA+Q+EK + + V+ GG + R L GV VVVGTPGR+ D+LRR L I+ VLDEAD+ Sbjct: 89 LGISPWIVERLAARGITRLFPIQRAVLDPAMQGKDMIGRARTGTGKTLAFGIPIMDRILRHNEKNGSGRNPLAIILAPTRELARQVEKEFKESAPLDSLCVY---GGVPISHQMRALNYGVDVVVGTPGRIIDLLRRGVLNLSEIQFVVLDEADQ 240
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH36_ARATH (DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis thaliana GN=RH36 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16 Identity = 55/155 (35.48%), Postives = 78/155 (50.32%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYI---KMFVLDEAD 704 +F+ +GL E + G KP+ +Q + G DV+ AQ+G+GKTA F IL +L ALV+ PTRELA Q+ + +ALG L ++ VGG + L + H+V+ TPGR+ +L P K VLDEAD Sbjct: 59 NFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEAD 213
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: PRP5_CANAL (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Candida albicans GN=PRP5 PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16 Identity = 58/142 (40.85%), Postives = 79/142 (55.63%), Query Frame = 3 Query: 306 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL-----QQLDYGLVQCQALVLAPTRELAQQIEK-VMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIK---MFVLDEAD 704 FEKPSAIQ + + G DVI A++G+GKT ++ +L QQ L+L+PTRELA QIEK ++ ++V C GG+S+ L+ GV ++VGTPGRV D+L S R +K VLDEAD Sbjct: 314 FEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQFSKDNQGPIGLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRVIDLLAANSGRVLNLKRCTFVVLDEAD 455
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: PRP28_PICST (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Pichia stipitis GN=PRP28 PE=3 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16 Identity = 56/145 (38.62%), Postives = 76/145 (52.41%), Query Frame = 3 Query: 312 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ--------LDYGLVQCQ------ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 +P+ IQ+ I DV+ A++G+GKT F +L L+Y Q Q L+LAPTRELAQQI K + GD LG+ V + +GG E ++ GVHVVV TPGR+ D L R + D ++DEAD Sbjct: 79 EPTPIQRAAIPLALNQRDVVGIAETGSGKTLAFLIPLLSYILNTDKNYLEYEHQQEQNYNKPLGLILAPTRELAQQITKEAQKFGDRLGLNVVSIIGGHQYEETVHSIRTGVHVVVATPGRLVDSLERNIIGLDKCYYLIMDEAD 223
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: HAS1_MAGGR (ATP-dependent RNA helicase HAS1 OS=Magnaporthe grisea GN=HAS1 PE=3 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16 Identity = 54/164 (32.93%), Postives = 86/164 (52.44%), Query Frame = 3 Query: 225 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQ----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 T+ + +F + L EN ++ I GF K + IQ+RGI P G DV+ A++G+GKT F ++ L + + +V++PTRELA QI V R L + +GG + R + L GV++++ TPGR+ D L+ ++ V+DEAD Sbjct: 105 TTAESEAQAFSELNLSENTMKAIEEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAVEMLRSLKFKPRNGTGVIVVSPTRELALQIFGVARDLMKHHSQTYGIVIGGANRRAEAEKLSKGVNLLIATPGRLLDHLQNTPFVFKNLRSLVIDEAD 268
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX47_HUMAN (Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens GN=DDX47 PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16 Identity = 56/158 (35.44%), Postives = 79/158 (50.00%), Query Frame = 3 Query: 234 DEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEAD 704 +E +F +G+ + L G+ KP+ IQ I +G D+I A++G+GKT F IL L + ALVL PTRELA QI + ALG +GV+ VGG L H+++ TPGR+ D L + +K V+DEAD Sbjct: 20 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEAD 177
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX47_BOVIN (Probable ATP-dependent RNA helicase DDX47 OS=Bos taurus GN=DDX47 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16 Identity = 56/153 (36.60%), Postives = 77/153 (50.33%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEAD 704 +F +G+ + L G+ KP+ IQ I +G D+I A++G+GKT F IL L + ALVL PTRELA QI + ALG +GV+ VGG L H+V+ TPGR+ D L + +K V+DEAD Sbjct: 27 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEAD 179
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX3_DROME (ATP-dependent RNA helicase bel OS=Drosophila melanogaster GN=bel PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16 Identity = 58/167 (34.73%), Postives = 84/167 (50.30%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-DYGLVQCQ--------------ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 SFD + L E + + ++KP+ +Q+ I G D++ AQ+G+GKTA F IL Q+ + G V LVLAPTRELA QI + + ++ GG + E R L G H++V TPGR+ DM+ R + + I+ VLDEAD Sbjct: 296 SFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEAD 462
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP10_YARLI (ATP-dependent RNA helicase DBP10 OS=Yarrowia lipolytica GN=DBP10 PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16 Identity = 49/154 (31.82%), Postives = 87/154 (56.49%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY--GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 SF +GL + +L+ I GF++P+ IQ++ I +G DV+ A++G+GKTA F +L++L V +A++L+P+RELA Q KV++ +++ VGG S+ E +++ + +++ TPGR + L ++ DEAD Sbjct: 103 SFAGLGLSQLVLKNIARKGFKQPTPIQRKTIPLVLEGKDVVGMARTGSGKTAAFVLPMLEKLKVHSAKVGARAVILSPSRELALQTLKVVKDFSAGTDLRLAMLVGGDSLEEQFKMMMSNPDIIIATPGRFLHLKVEMELSLASVEYICFDEAD 256 The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bpback to top |