CN189435

Overview
NameCN189435
Unique NameCN189435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_PROMH (ATP-dependent RNA helicase rhlB OS=Proteus mirabilis (strain HI4320) GN=rhlB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 54/158 (34.18%), Postives = 80/158 (50.63%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F    L   ++  +   GF   + IQ   +    KG D+  QAQ+GTGKT  F +     L        +   Q +AL++APTRELA QI    + L    GVK+    GG    E  ++L  GV +V+GT GR+ D +++  +  + I++ VLDEAD
Sbjct:   11 FSDFALHPKVIEALEKKGFSNCTQIQALTLPITVKGHDIAGQAQTGTGKTLAFLTSTFHYLLTHPAKEGHEKNQPRALIMAPTRELAVQIYTDAQPLAQSTGVKMGLAYGGDGYDEQLKVLNNGVDIVIGTTGRLIDYVKQGHINLNAIQVVVLDEAD 168          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH53_ORYSJ (DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp. japonica GN=Os07g0143700 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 56/155 (36.13%), Postives = 85/155 (54.84%), Query Frame = 3
Query:  261 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +G+   ++  + A G  +   IQ+  + P  +G D+I +A++GTGKT  F   I+ ++      +       A++LAPTRELA+Q+EK  +       + V+   GG  +    R L  GV VVVGTPGR+ D+LRR  L    I+  VLDEAD+
Sbjct:   89 LGISPWIVERLAARGITRLFPIQRAVLDPAMQGKDMIGRARTGTGKTLAFGIPIMDRILRHNEKNGSGRNPLAIILAPTRELARQVEKEFKESAPLDSLCVY---GGVPISHQMRALNYGVDVVVGTPGRIIDLLRRGVLNLSEIQFVVLDEADQ 240          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH36_ARATH (DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis thaliana GN=RH36 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 55/155 (35.48%), Postives = 78/155 (50.32%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYI---KMFVLDEAD 704
            +F+ +GL E  +      G  KP+ +Q   +     G DV+  AQ+G+GKTA F   IL +L        ALV+ PTRELA Q+ +  +ALG  L ++    VGG  +      L +  H+V+ TPGR+  +L      P      K  VLDEAD
Sbjct:   59 NFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEAD 213          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: PRP5_CANAL (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Candida albicans GN=PRP5 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 58/142 (40.85%), Postives = 79/142 (55.63%), Query Frame = 3
Query:  306 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL-----QQLDYGLVQCQALVLAPTRELAQQIEK-VMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIK---MFVLDEAD 704
            FEKPSAIQ + +     G DVI  A++G+GKT ++   +L     QQ          L+L+PTRELA QIEK ++        ++V  C GG+S+      L+ GV ++VGTPGRV D+L   S R   +K     VLDEAD
Sbjct:  314 FEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQFSKDNQGPIGLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRVIDLLAANSGRVLNLKRCTFVVLDEAD 455          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: PRP28_PICST (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Pichia stipitis GN=PRP28 PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 56/145 (38.62%), Postives = 76/145 (52.41%), Query Frame = 3
Query:  312 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ--------LDYGLVQCQ------ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            +P+ IQ+  I       DV+  A++G+GKT  F   +L          L+Y   Q Q       L+LAPTRELAQQI K  +  GD LG+ V + +GG    E    ++ GVHVVV TPGR+ D L R  +  D     ++DEAD
Sbjct:   79 EPTPIQRAAIPLALNQRDVVGIAETGSGKTLAFLIPLLSYILNTDKNYLEYEHQQEQNYNKPLGLILAPTRELAQQITKEAQKFGDRLGLNVVSIIGGHQYEETVHSIRTGVHVVVATPGRLVDSLERNIIGLDKCYYLIMDEAD 223          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: HAS1_MAGGR (ATP-dependent RNA helicase HAS1 OS=Magnaporthe grisea GN=HAS1 PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 54/164 (32.93%), Postives = 86/164 (52.44%), Query Frame = 3
Query:  225 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQ----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            T+ +    +F  + L EN ++ I   GF K + IQ+RGI P   G DV+  A++G+GKT  F    ++ L     + +     +V++PTRELA QI  V R L  +        +GG + R +   L  GV++++ TPGR+ D L+        ++  V+DEAD
Sbjct:  105 TTAESEAQAFSELNLSENTMKAIEEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAVEMLRSLKFKPRNGTGVIVVSPTRELALQIFGVARDLMKHHSQTYGIVIGGANRRAEAEKLSKGVNLLIATPGRLLDHLQNTPFVFKNLRSLVIDEAD 268          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX47_HUMAN (Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens GN=DDX47 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 56/158 (35.44%), Postives = 79/158 (50.00%), Query Frame = 3
Query:  234 DEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEAD 704
            +E   +F  +G+ + L       G+ KP+ IQ   I    +G D+I  A++G+GKT  F   IL  L     +  ALVL PTRELA QI +   ALG  +GV+    VGG         L    H+++ TPGR+ D L   +      +K  V+DEAD
Sbjct:   20 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEAD 177          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX47_BOVIN (Probable ATP-dependent RNA helicase DDX47 OS=Bos taurus GN=DDX47 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 56/153 (36.60%), Postives = 77/153 (50.33%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEAD 704
            +F  +G+ + L       G+ KP+ IQ   I    +G D+I  A++G+GKT  F   IL  L     +  ALVL PTRELA QI +   ALG  +GV+    VGG         L    H+V+ TPGR+ D L   +      +K  V+DEAD
Sbjct:   27 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEAD 179          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX3_DROME (ATP-dependent RNA helicase bel OS=Drosophila melanogaster GN=bel PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 58/167 (34.73%), Postives = 84/167 (50.30%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-DYGLVQCQ--------------ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            SFD + L E +   +    ++KP+ +Q+  I     G D++  AQ+G+GKTA F   IL Q+ + G V                  LVLAPTRELA QI +  +       ++     GG +  E  R L  G H++V TPGR+ DM+ R  +  + I+  VLDEAD
Sbjct:  296 SFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEAD 462          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP10_YARLI (ATP-dependent RNA helicase DBP10 OS=Yarrowia lipolytica GN=DBP10 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 49/154 (31.82%), Postives = 87/154 (56.49%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY--GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            SF  +GL + +L+ I   GF++P+ IQ++ I    +G DV+  A++G+GKTA F   +L++L      V  +A++L+P+RELA Q  KV++       +++   VGG S+ E  +++ +   +++ TPGR   +     L    ++    DEAD
Sbjct:  103 SFAGLGLSQLVLKNIARKGFKQPTPIQRKTIPLVLEGKDVVGMARTGSGKTAAFVLPMLEKLKVHSAKVGARAVILSPSRELALQTLKVVKDFSAGTDLRLAMLVGGDSLEEQFKMMMSNPDIIIATPGRFLHLKVEMELSLASVEYICFDEAD 256          
The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHLB_PROMH1.368e-1634.18ATP-dependent RNA helicase rhlB OS=Proteus mirabil... [more]
RH53_ORYSJ1.368e-1636.13DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sa... [more]
RH36_ARATH1.368e-1635.48DEAD-box ATP-dependent RNA helicase 36 OS=Arabidop... [more]
PRP5_CANAL1.368e-1640.85Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
PRP28_PICST1.368e-1638.62Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
HAS1_MAGGR1.368e-1632.93ATP-dependent RNA helicase HAS1 OS=Magnaporthe gri... [more]
DDX47_HUMAN1.368e-1635.44Probable ATP-dependent RNA helicase DDX47 OS=Homo ... [more]
DDX47_BOVIN1.368e-1636.60Probable ATP-dependent RNA helicase DDX47 OS=Bos t... [more]
DDX3_DROME1.368e-1634.73ATP-dependent RNA helicase bel OS=Drosophila melan... [more]
DBP10_YARLI1.368e-1631.82ATP-dependent RNA helicase DBP10 OS=Yarrowia lipol... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bp
GCAGGCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCAATC
TTCTCCTTCTCTTTGAAAAAAAAAAGAAAACCAACTCTTTCTCTCCATTT
TAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAG
GATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGCTC
TCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAG
TTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCTT
ATGGGTTTGAGAAGCCTTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTC
TGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAAC
AGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCC
AATGTCAGGCCCTGGTGTTGGCACCCACTAGGGAACTAGCTCAACAAATT
GAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGC
TTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCTG
GTGTTCATGTTGTTGTTGGCACTCCTGGTCGTGTGTTTGACATGCTGCGC
CGACAGTCTTTACGCCCTGATTACATTAAGATGTTTGTACTGGATGAGGC
TGATGAAAT
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