CN189435
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: CSHB_BACSU (DEAD-box ATP-dependent RNA helicase cshB OS=Bacillus subtilis GN=cshB PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16 Identity = 52/154 (33.77%), Postives = 88/154 (57.14%), Query Frame = 3 Query: 252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI-EKVMRALGDYLGVKVHA--CVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 F+ L+ ++ ++ GF +P+ IQ+R I K VI Q+Q+GTGKT + +L ++D Q ++ APTRELA QI ++ ++ G ++ + +GGT ++ L+ H+VVGTPGR+ D+++ Q+L + V+DEAD Sbjct: 6 FELYELKPFIIDAVHRLGFYEPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLLPLLNKIDPAKDVVQVVITAPTRELANQIYQEALKITQGEEGSQIRSKCFIGGTDKQKSIDKLKIQPHLVVGTPGRIADLIKEQALSVHKAESLVIDEAD 159
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: VASA_DROME (ATP-dependent RNA helicase vasa OS=Drosophila melanogaster GN=vas PE=1 SV=3) HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16 Identity = 53/156 (33.97%), Postives = 83/156 (53.21%), Query Frame = 3 Query: 252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-----DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 F + L++ ++ + G++ P+ IQ+ I G D++ AQ+G+GKTA F IL +L + L + Q ++++PTRELA QI R +K+ GGTS R + G HVV+ TPGR+ D + R + + + VLDEAD Sbjct: 247 FTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEAD 402
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_XANC5 (ATP-dependent RNA helicase rhlB OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=rhlB PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16 Identity = 59/165 (35.76%), Postives = 87/165 (52.73%), Query Frame = 3 Query: 234 DEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDY-IKMFVLDEAD 704 D + SFD L L+ G+ + GF + + IQ + G DV QAQ+GTGKT F ++ +L D +AL+LAPTRELA QI K G LG++ GG + + +LQ GV V++ TPGR+ D +++ + + ++ VLDEAD Sbjct: 8 DVTFSSFD---LHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEAD 169
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_XANAC (ATP-dependent RNA helicase rhlB OS=Xanthomonas axonopodis pv. citri GN=rhlB PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16 Identity = 59/165 (35.76%), Postives = 87/165 (52.73%), Query Frame = 3 Query: 234 DEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDY-IKMFVLDEAD 704 D + SFD L L+ G+ + GF + + IQ + G DV QAQ+GTGKT F ++ +L D +AL+LAPTRELA QI K G LG++ GG + + +LQ GV V++ TPGR+ D +++ + + ++ VLDEAD Sbjct: 8 DVTFSSFD---LHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEAD 169
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_SHISS (ATP-dependent RNA helicase rhlB OS=Shigella sonnei (strain Ss046) GN=rhlB PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16 Identity = 52/158 (32.91%), Postives = 80/158 (50.63%), Query Frame = 3 Query: 252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 F L ++ + GF + IQ + G DV QAQ+GTGKT F + L D + Q +AL++APTRELA QI L + G+K+ GG + ++L++GV +++GT GR+ D ++ + I++ VLDEAD Sbjct: 11 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_SHIFL (ATP-dependent RNA helicase rhlB OS=Shigella flexneri GN=rhlB PE=3 SV=2) HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16 Identity = 52/158 (32.91%), Postives = 80/158 (50.63%), Query Frame = 3 Query: 252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 F L ++ + GF + IQ + G DV QAQ+GTGKT F + L D + Q +AL++APTRELA QI L + G+K+ GG + ++L++GV +++GT GR+ D ++ + I++ VLDEAD Sbjct: 11 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_SHIF8 (ATP-dependent RNA helicase rhlB OS=Shigella flexneri serotype 5b (strain 8401) GN=rhlB PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16 Identity = 52/158 (32.91%), Postives = 80/158 (50.63%), Query Frame = 3 Query: 252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 F L ++ + GF + IQ + G DV QAQ+GTGKT F + L D + Q +AL++APTRELA QI L + G+K+ GG + ++L++GV +++GT GR+ D ++ + I++ VLDEAD Sbjct: 11 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_SHEFN (ATP-dependent RNA helicase rhlB OS=Shewanella frigidimarina (strain NCIMB 400) GN=rhlB PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16 Identity = 52/153 (33.99%), Postives = 78/153 (50.98%), Query Frame = 3 Query: 267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 L+ +L + GFE + IQ + D+ QAQ+GTGKT F L + +A+++APTRELA QI K + L + G+KV GG S + +L GV +++GT GR+ D +R+ + +I+ VLDEAD Sbjct: 16 LKPEILAALNENGFEFCTPIQALSLPILLNAKDIAGQAQTGTGKTMAFLVATFNHLLNVAAPESRKATEPRAIIMAPTRELAIQIAKDAKLLAAHTGLKVGIVYGGESYETQRAVLDKGVDILIGTTGRIIDYVRQGVISLSHIQAVVLDEAD 168
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_PHOPR (ATP-dependent RNA helicase rhlB OS=Photobacterium profundum GN=rhlB PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16 Identity = 53/158 (33.54%), Postives = 82/158 (51.90%), Query Frame = 3 Query: 252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 F +GL+ +L G+ A GF + IQ + G D+ QAQ+GTGKT F + L + Q +A+++APTRELA QI L G+K GG + + Q++ GV +++GT GR+ D +++ + I++ VLDEAD Sbjct: 11 FADLGLEPTVLEGLDAQGFHYCTPIQALALPVVLTGQDIAGQAQTGTGKTLAFLTATFNYLLLNPASDERKTNQPRAIIMAPTRELAIQIYNDAAPLLASTGLKAGLAYGGEAYEKQQKVFAEGVDILIGTCGRIIDFYKQRVIDLASIQVVVLDEAD 168
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_ECOUT (ATP-dependent RNA helicase rhlB OS=Escherichia coli (strain UTI89 / UPEC) GN=rhlB PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16 Identity = 52/158 (32.91%), Postives = 80/158 (50.63%), Query Frame = 3 Query: 252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 F L ++ + GF + IQ + G DV QAQ+GTGKT F + L D + Q +AL++APTRELA QI L + G+K+ GG + ++L++GV +++GT GR+ D ++ + I++ VLDEAD Sbjct: 11 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bpback to top |