CN189435

Overview
NameCN189435
Unique NameCN189435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: CSHB_BACSU (DEAD-box ATP-dependent RNA helicase cshB OS=Bacillus subtilis GN=cshB PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 52/154 (33.77%), Postives = 88/154 (57.14%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI-EKVMRALGDYLGVKVHA--CVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F+   L+  ++  ++  GF +P+ IQ+R I    K   VI Q+Q+GTGKT  +   +L ++D      Q ++ APTRELA QI ++ ++      G ++ +   +GGT  ++    L+   H+VVGTPGR+ D+++ Q+L     +  V+DEAD
Sbjct:    6 FELYELKPFIIDAVHRLGFYEPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLLPLLNKIDPAKDVVQVVITAPTRELANQIYQEALKITQGEEGSQIRSKCFIGGTDKQKSIDKLKIQPHLVVGTPGRIADLIKEQALSVHKAESLVIDEAD 159          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: VASA_DROME (ATP-dependent RNA helicase vasa OS=Drosophila melanogaster GN=vas PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 53/156 (33.97%), Postives = 83/156 (53.21%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-----DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F +  L++ ++  +   G++ P+ IQ+  I     G D++  AQ+G+GKTA F   IL +L     +  L + Q ++++PTRELA QI    R       +K+    GGTS R     +  G HVV+ TPGR+ D + R  +  +  +  VLDEAD
Sbjct:  247 FTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEAD 402          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_XANC5 (ATP-dependent RNA helicase rhlB OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=rhlB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 59/165 (35.76%), Postives = 87/165 (52.73%), Query Frame = 3
Query:  234 DEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDY-IKMFVLDEAD 704
            D  + SFD   L   L+ G+ + GF + + IQ   +     G DV  QAQ+GTGKT  F   ++ +L       D      +AL+LAPTRELA QI K     G  LG++     GG    + + +LQ GV V++ TPGR+ D +++  +   +  ++ VLDEAD
Sbjct:    8 DVTFSSFD---LHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEAD 169          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_XANAC (ATP-dependent RNA helicase rhlB OS=Xanthomonas axonopodis pv. citri GN=rhlB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 59/165 (35.76%), Postives = 87/165 (52.73%), Query Frame = 3
Query:  234 DEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDY-IKMFVLDEAD 704
            D  + SFD   L   L+ G+ + GF + + IQ   +     G DV  QAQ+GTGKT  F   ++ +L       D      +AL+LAPTRELA QI K     G  LG++     GG    + + +LQ GV V++ TPGR+ D +++  +   +  ++ VLDEAD
Sbjct:    8 DVTFSSFD---LHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEAD 169          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_SHISS (ATP-dependent RNA helicase rhlB OS=Shigella sonnei (strain Ss046) GN=rhlB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 52/158 (32.91%), Postives = 80/158 (50.63%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F    L   ++  +   GF   + IQ   +     G DV  QAQ+GTGKT  F +     L       D  + Q +AL++APTRELA QI      L +  G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD
Sbjct:   11 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_SHIFL (ATP-dependent RNA helicase rhlB OS=Shigella flexneri GN=rhlB PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 52/158 (32.91%), Postives = 80/158 (50.63%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F    L   ++  +   GF   + IQ   +     G DV  QAQ+GTGKT  F +     L       D  + Q +AL++APTRELA QI      L +  G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD
Sbjct:   11 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_SHIF8 (ATP-dependent RNA helicase rhlB OS=Shigella flexneri serotype 5b (strain 8401) GN=rhlB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 52/158 (32.91%), Postives = 80/158 (50.63%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F    L   ++  +   GF   + IQ   +     G DV  QAQ+GTGKT  F +     L       D  + Q +AL++APTRELA QI      L +  G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD
Sbjct:   11 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_SHEFN (ATP-dependent RNA helicase rhlB OS=Shewanella frigidimarina (strain NCIMB 400) GN=rhlB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 52/153 (33.99%), Postives = 78/153 (50.98%), Query Frame = 3
Query:  267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            L+  +L  +   GFE  + IQ   +       D+  QAQ+GTGKT  F       L            + +A+++APTRELA QI K  + L  + G+KV    GG S    + +L  GV +++GT GR+ D +R+  +   +I+  VLDEAD
Sbjct:   16 LKPEILAALNENGFEFCTPIQALSLPILLNAKDIAGQAQTGTGKTMAFLVATFNHLLNVAAPESRKATEPRAIIMAPTRELAIQIAKDAKLLAAHTGLKVGIVYGGESYETQRAVLDKGVDILIGTTGRIIDYVRQGVISLSHIQAVVLDEAD 168          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_PHOPR (ATP-dependent RNA helicase rhlB OS=Photobacterium profundum GN=rhlB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 53/158 (33.54%), Postives = 82/158 (51.90%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F  +GL+  +L G+ A GF   + IQ   +     G D+  QAQ+GTGKT  F +     L       +    Q +A+++APTRELA QI      L    G+K     GG +  + Q++   GV +++GT GR+ D  +++ +    I++ VLDEAD
Sbjct:   11 FADLGLEPTVLEGLDAQGFHYCTPIQALALPVVLTGQDIAGQAQTGTGKTLAFLTATFNYLLLNPASDERKTNQPRAIIMAPTRELAIQIYNDAAPLLASTGLKAGLAYGGEAYEKQQKVFAEGVDILIGTCGRIIDFYKQRVIDLASIQVVVLDEAD 168          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_ECOUT (ATP-dependent RNA helicase rhlB OS=Escherichia coli (strain UTI89 / UPEC) GN=rhlB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 52/158 (32.91%), Postives = 80/158 (50.63%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F    L   ++  +   GF   + IQ   +     G DV  QAQ+GTGKT  F +     L       D  + Q +AL++APTRELA QI      L +  G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD
Sbjct:   11 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168          
The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CSHB_BACSU1.368e-1633.77DEAD-box ATP-dependent RNA helicase cshB OS=Bacill... [more]
VASA_DROME1.786e-1633.97ATP-dependent RNA helicase vasa OS=Drosophila mela... [more]
RHLB_XANC51.786e-1635.76ATP-dependent RNA helicase rhlB OS=Xanthomonas cam... [more]
RHLB_XANAC1.786e-1635.76ATP-dependent RNA helicase rhlB OS=Xanthomonas axo... [more]
RHLB_SHISS1.786e-1632.91ATP-dependent RNA helicase rhlB OS=Shigella sonnei... [more]
RHLB_SHIFL1.786e-1632.91ATP-dependent RNA helicase rhlB OS=Shigella flexne... [more]
RHLB_SHIF81.786e-1632.91ATP-dependent RNA helicase rhlB OS=Shigella flexne... [more]
RHLB_SHEFN1.786e-1633.99ATP-dependent RNA helicase rhlB OS=Shewanella frig... [more]
RHLB_PHOPR1.786e-1633.54ATP-dependent RNA helicase rhlB OS=Photobacterium ... [more]
RHLB_ECOUT1.786e-1632.91ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bp
GCAGGCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCAATC
TTCTCCTTCTCTTTGAAAAAAAAAAGAAAACCAACTCTTTCTCTCCATTT
TAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAG
GATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGCTC
TCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAG
TTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCTT
ATGGGTTTGAGAAGCCTTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTC
TGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAAC
AGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCC
AATGTCAGGCCCTGGTGTTGGCACCCACTAGGGAACTAGCTCAACAAATT
GAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGC
TTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCTG
GTGTTCATGTTGTTGTTGGCACTCCTGGTCGTGTGTTTGACATGCTGCGC
CGACAGTCTTTACGCCCTGATTACATTAAGATGTTTGTACTGGATGAGGC
TGATGAAAT
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