CN189435

Overview
NameCN189435
Unique NameCN189435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_ECO8A (ATP-dependent RNA helicase rhlB OS=Escherichia coli O8 (strain IAI1) GN=rhlB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 52/158 (32.91%), Postives = 80/158 (50.63%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F    L   ++  +   GF   + IQ   +     G DV  QAQ+GTGKT  F +     L       D  + Q +AL++APTRELA QI      L +  G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD
Sbjct:   11 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_ECO81 (ATP-dependent RNA helicase rhlB OS=Escherichia coli O81 (strain ED1a) GN=rhlB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 52/158 (32.91%), Postives = 80/158 (50.63%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F    L   ++  +   GF   + IQ   +     G DV  QAQ+GTGKT  F +     L       D  + Q +AL++APTRELA QI      L +  G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD
Sbjct:   11 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_ECO55 (ATP-dependent RNA helicase rhlB OS=Escherichia coli (strain 55989 / EAEC) GN=rhlB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 52/158 (32.91%), Postives = 80/158 (50.63%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F    L   ++  +   GF   + IQ   +     G DV  QAQ+GTGKT  F +     L       D  + Q +AL++APTRELA QI      L +  G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD
Sbjct:   11 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_ECO45 (ATP-dependent RNA helicase rhlB OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rhlB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 52/158 (32.91%), Postives = 80/158 (50.63%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F    L   ++  +   GF   + IQ   +     G DV  QAQ+GTGKT  F +     L       D  + Q +AL++APTRELA QI      L +  G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD
Sbjct:   11 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_ECO27 (ATP-dependent RNA helicase rhlB OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=rhlB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 52/158 (32.91%), Postives = 80/158 (50.63%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F    L   ++  +   GF   + IQ   +     G DV  QAQ+GTGKT  F +     L       D  + Q +AL++APTRELA QI      L +  G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD
Sbjct:   11 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_ECO24 (ATP-dependent RNA helicase rhlB OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=rhlB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 52/158 (32.91%), Postives = 80/158 (50.63%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F    L   ++  +   GF   + IQ   +     G DV  QAQ+GTGKT  F +     L       D  + Q +AL++APTRELA QI      L +  G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD
Sbjct:   11 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_AERS4 (ATP-dependent RNA helicase rhlB OS=Aeromonas salmonicida (strain A449) GN=rhlB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 54/160 (33.75%), Postives = 85/160 (53.12%), Query Frame = 3
Query:  246 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL------DYGLV-QCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            + F  MGL+  +L G+ + GF   + IQ   +    +G D+  QAQ+GTGKT  F +     L      +  LV Q +A+++APTRELA QI      +    G+K+    GG    +   +L+ GV +++GT GR+ D  + + +    I++ VLDEAD
Sbjct:    9 EKFAQMGLEPEVLAGLESKGFHYCTPIQALSLPLLVEGHDLAGQAQTGTGKTIAFLAATFNYLLTHPLSNPRLVNQPRAIIMAPTRELAVQIYNDADTISASTGLKLGLAYGGEGYDKQLAVLEQGVDILIGTTGRIIDYFKSKVIDLSNIQVVVLDEAD 168          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP2_AJECN (ATP-dependent RNA helicase DBP2 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=DBP2 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 54/158 (34.18%), Postives = 79/158 (50.00%), Query Frame = 3
Query:  246 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQA-----LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            ++FD  G  + ++  + A GF +P+AIQ +G      G DV+  A++G+GKT T+C   +  ++   +         LVLAPTRELA QI+  +   G    ++     GG       R L  GV V + TPGR+ DML         +   VLDEAD
Sbjct:  125 ETFDEAGFPQYVMSEVKAQGFARPTAIQAQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQIRDLTRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEAD 282          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP10_AJECN (ATP-dependent RNA helicase DBP10 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=DBP10 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 53/153 (34.64%), Postives = 83/153 (54.25%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQ--CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F ++GL   LL+ I   GF  P+ IQ++ I       DV+  A++G+GKTA F   ++++L     +   +AL+L+P+RELA Q  KV++ LG    +K    VGG S+ E    + +   +++ TPGR   +    SL    I+  V DEAD
Sbjct:   88 FQSLGLNAALLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIPMIEKLKSHSAKFGSRALILSPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFEYMASNPDIIIATPGRFLHLKVEMSLDLSSIRYVVFDEAD 240          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_XANOR (ATP-dependent RNA helicase rhlB OS=Xanthomonas oryzae pv. oryzae GN=rhlB PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 59/165 (35.76%), Postives = 87/165 (52.73%), Query Frame = 3
Query:  234 DEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDY-IKMFVLDEAD 704
            D  + SFD   L   L+ G+ + GF + + IQ   +     G DV  QAQ+GTGKT  F   ++ +L       D      +AL+LAPTRELA QI K     G  LG++     GG    + + +LQ GV V++ TPGR+ D +++  +   +  ++ VLDEAD
Sbjct:    8 DVTFSSFD---LHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLNRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEAD 169          
The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHLB_ECO8A1.786e-1632.91ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECO811.786e-1632.91ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECO551.786e-1632.91ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECO451.786e-1632.91ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECO271.786e-1632.91ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECO241.786e-1632.91ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_AERS41.786e-1633.75ATP-dependent RNA helicase rhlB OS=Aeromonas salmo... [more]
DBP2_AJECN1.786e-1634.18ATP-dependent RNA helicase DBP2 OS=Ajellomyces cap... [more]
DBP10_AJECN1.786e-1634.64ATP-dependent RNA helicase DBP10 OS=Ajellomyces ca... [more]
RHLB_XANOR2.333e-1635.76ATP-dependent RNA helicase rhlB OS=Xanthomonas ory... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bp
GCAGGCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCAATC
TTCTCCTTCTCTTTGAAAAAAAAAAGAAAACCAACTCTTTCTCTCCATTT
TAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAG
GATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGCTC
TCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAG
TTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCTT
ATGGGTTTGAGAAGCCTTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTC
TGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAAC
AGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCC
AATGTCAGGCCCTGGTGTTGGCACCCACTAGGGAACTAGCTCAACAAATT
GAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGC
TTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCTG
GTGTTCATGTTGTTGTTGGCACTCCTGGTCGTGTGTTTGACATGCTGCGC
CGACAGTCTTTACGCCCTGATTACATTAAGATGTTTGTACTGGATGAGGC
TGATGAAAT
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