CN189435

Overview
NameCN189435
Unique NameCN189435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_SHELP (ATP-dependent RNA helicase rhlB OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=rhlB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 55/158 (34.81%), Postives = 79/158 (50.00%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F    L   + + +   GFE  + IQ   +    +  D+  QAQ+GTGKT  F       L          L Q +A+V+APTRELA QI K    L  + G+KV    GG S    +++L  GV +++GT GR+ D +R+  +    I+  VLDEAD
Sbjct:   11 FADFSLHPEIQQALVESGFEYCTPIQALSLPILLEHKDIAGQAQTGTGKTLAFLVATFNHLLTTPIPDGRQLNQPRAIVMAPTRELAIQIAKDGELLAKHTGLKVGIVYGGESYEVQRKVLDKGVDILIGTTGRIIDYVRQGVINLSAIQAVVLDEAD 168          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_PECCP (ATP-dependent RNA helicase rhlB OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rhlB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 52/158 (32.91%), Postives = 79/158 (50.00%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F    L   ++  + + GF   + IQ   +     G DV  QAQ+GTGKT  F +     L       +    Q +AL++APTRELA QI     AL    G+K+    GG    +  ++L+ GV +++GT GR+ D  ++  +    I++ VLDEAD
Sbjct:   11 FSDFALHPQVIEALESKGFHNCTPIQALALPLALSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPANAERQTNQPRALIMAPTRELAVQIHSDAEALSHLTGLKLGLAYGGDGYDKQLKVLENGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_KLEP7 (ATP-dependent RNA helicase rhlB OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rhlB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 52/158 (32.91%), Postives = 80/158 (50.63%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F    L   ++  +   GF   + IQ   +    +G DV  QAQ+GTGKT  F +     L       D  + Q +AL++APTRELA QI      L    G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD
Sbjct:   11 FSDFALHPAVIEALEKKGFHNCTPIQALALPLTLEGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRQVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_KLEP3 (ATP-dependent RNA helicase rhlB OS=Klebsiella pneumoniae (strain 342) GN=rhlB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 52/158 (32.91%), Postives = 80/158 (50.63%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F    L   ++  +   GF   + IQ   +    +G DV  QAQ+GTGKT  F +     L       D  + Q +AL++APTRELA QI      L    G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD
Sbjct:   11 FSDFALHPAVIEALEKKGFHNCTPIQALALPLTLEGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRQVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_HAMD5 (ATP-dependent RNA helicase rhlB OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=rhlB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 52/158 (32.91%), Postives = 80/158 (50.63%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV----QCQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F    L   +++ I   GF   + IQ         G DV  QAQ+GTGKT  F + +   L         QC+   AL++ PTRELA QI      L  +  +K+    GG    +  +IL++GV +++GTPGR+ D  ++  +  + +++ VLDEAD
Sbjct:   11 FSDFALHPLVIKAIENQGFYHCTPIQALSFPITLAGRDVAAQAQTGTGKTLAFLASVFNYLLTNAADETRQCEQPRALIMVPTRELAIQIYTDAETLSQFTSLKMGLAYGGDGYDKQLKILESGVDILIGTPGRIIDYAKQNFIHLNALQVIVLDEAD 168          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH20_ARATH (DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana GN=RH20 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 64/209 (30.62%), Postives = 98/209 (46.89%), Query Frame = 3
Query:  126 DMAGLAPEGSQFD------ARQYDTKMNEL-----LSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQA-----LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            D+ GL P    F       A   DT++ E      ++ +G+D      +   SF  +G  + +L  +   GF +P+ IQ +G     KG D+I  A++G+GKT ++    +  ++   +         LVLAPTRELA QI++     G    +K     GG       R LQ GV +V+ TPGR+ DM+   +     +   VLDEAD
Sbjct:   52 DLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDI----PKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEAD 256          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH10_ARATH (DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis thaliana GN=RH10 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 60/170 (35.29%), Postives = 86/170 (50.59%), Query Frame = 3
Query:  234 DEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQ------------ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFD-MLRRQSLRPDYIKMFVLDEAD 704
            +EV  +F  +G++E L++     G++ PS IQ   +    +G DVI  AQ+G+GKT  F   ILQ L   +   +            A VL+PTRELA QI +   ALG  + ++    VGG    +    L    HV+V TPGR++D M   +      +K  VLDEAD
Sbjct:    5 NEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEAD 174          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: MAK5_NEOFI (ATP-dependent RNA helicase mak5 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=mak5 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 71/204 (34.80%), Postives = 109/204 (53.43%), Query Frame = 3
Query:  165 ARQYDTKMNELLSTDG-QDFFTSYDEVYD--SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL------DYGLVQCQ---------ALVLAPTRELAQQIEK---VMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSL--RPDYIKMFVLDEAD 704
            A Q+DT +N  LS    QD  T  D+  D  ++D++GL   +L G+    F  P+++Q+  I    +G DVI +A +G+GKT  F   IL+        D    + +         AL+L+PTRELA Q+ K    + A    +  ++    GG SV++ QR+L +G  +V+GTPGRV+++L   Q L  +   IK  V+DEAD
Sbjct:  173 AIQHDTSINAGLSFAALQD--TEEDDGADVSAWDSLGLSPEILTGLSKMKFASPTSVQEACIPQILEGHDVIGKASTGSGKTLAFGIPILEHYLEKKRDDISAEKEKKSEKDSTPIALILSPTRELAHQLSKHIGELIAQAPGVNARIALLTGGLSVQKQQRLL-SGADIVIGTPGRVWEILSTGQGLIRKMQQIKFLVVDEAD 373          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: MAK5_GIBZE (ATP-dependent RNA helicase MAK5 OS=Gibberella zeae GN=MAK5 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 64/179 (35.75%), Postives = 99/179 (55.31%), Query Frame = 3
Query:  207 DGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGI------LQQLDYGLVQC--QALVLAPTRELAQQIEKVMRALGDYLGVKVHACV--GGTSVREDQRILQAGVHVVVGTPGRVFDML---RRQSLRPDYIKMFVLDEAD 704
            DG D+    D    ++ ++ L   ++  I    F KP+ IQ+R I     G DVI +AQ+G+GKT  F  GI      L+  + G+ +    +LVL+PTRELA+Q+   ++AL D L    + CV  GG S+ + QR L+    +V+GTPGR++++L   R    +   I+  V+DEAD
Sbjct:  202 DGNDYKDQEDVDMAAWVSLNLSPQIISAIAKLKFMKPTKIQKRTIPEIVAGHDVIGKAQTGSGKTLAF--GIPMVERWLEMQEQGVKRTGPMSLVLSPTRELAKQLGDHLKALCDGLPSAPYVCVVTGGLSILKQQRQLEK-ADIVIGTPGRLWEVLSGDRALQSKFAKIRFLVVDEAD 377          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: HAS1_DEBHA (ATP-dependent RNA helicase HAS1 OS=Debaryomyces hansenii GN=HAS1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 58/163 (35.58%), Postives = 86/163 (52.76%), Query Frame = 3
Query:  234 DEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL-----VQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEAD 704
            D V D+F+  GL E  L+ I   GF K + +Q + I P   G DV+  A++G+GKT  F    ++ L Y L          +V++PTRELA QI  V R L  +        +GG + R++   L  GV++++ TPGR+ D L+  Q      +K  V+DEAD
Sbjct:  100 DIVTDNFEEAGLSEPTLKAIKDMGFSKMTQVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEML-YSLRFKPRNGTGVVVVSPTRELALQIFGVARELMAHHSQTFGIVIGGANRRQEAEKLMKGVNLLIATPGRLLDHLQNTQGFVFKNVKALVIDEAD 261          
The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHLB_SHELP2.333e-1634.81ATP-dependent RNA helicase rhlB OS=Shewanella loih... [more]
RHLB_PECCP2.333e-1632.91ATP-dependent RNA helicase rhlB OS=Pectobacterium ... [more]
RHLB_KLEP72.333e-1632.91ATP-dependent RNA helicase rhlB OS=Klebsiella pneu... [more]
RHLB_KLEP32.333e-1632.91ATP-dependent RNA helicase rhlB OS=Klebsiella pneu... [more]
RHLB_HAMD52.333e-1632.91ATP-dependent RNA helicase rhlB OS=Hamiltonella de... [more]
RH20_ARATH2.333e-1630.62DEAD-box ATP-dependent RNA helicase 20 OS=Arabidop... [more]
RH10_ARATH2.333e-1635.29DEAD-box ATP-dependent RNA helicase 10 OS=Arabidop... [more]
MAK5_NEOFI2.333e-1634.80ATP-dependent RNA helicase mak5 OS=Neosartorya fis... [more]
MAK5_GIBZE2.333e-1635.75ATP-dependent RNA helicase MAK5 OS=Gibberella zeae... [more]
HAS1_DEBHA2.333e-1635.58ATP-dependent RNA helicase HAS1 OS=Debaryomyces ha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bp
GCAGGCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCAATC
TTCTCCTTCTCTTTGAAAAAAAAAAGAAAACCAACTCTTTCTCTCCATTT
TAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAG
GATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGCTC
TCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAG
TTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCTT
ATGGGTTTGAGAAGCCTTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTC
TGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAAC
AGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCC
AATGTCAGGCCCTGGTGTTGGCACCCACTAGGGAACTAGCTCAACAAATT
GAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGC
TTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCTG
GTGTTCATGTTGTTGTTGGCACTCCTGGTCGTGTGTTTGACATGCTGCGC
CGACAGTCTTTACGCCCTGATTACATTAAGATGTTTGTACTGGATGAGGC
TGATGAAAT
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