CN189435
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_SHELP (ATP-dependent RNA helicase rhlB OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=rhlB PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16 Identity = 55/158 (34.81%), Postives = 79/158 (50.00%), Query Frame = 3 Query: 252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 F L + + + GFE + IQ + + D+ QAQ+GTGKT F L L Q +A+V+APTRELA QI K L + G+KV GG S +++L GV +++GT GR+ D +R+ + I+ VLDEAD Sbjct: 11 FADFSLHPEIQQALVESGFEYCTPIQALSLPILLEHKDIAGQAQTGTGKTLAFLVATFNHLLTTPIPDGRQLNQPRAIVMAPTRELAIQIAKDGELLAKHTGLKVGIVYGGESYEVQRKVLDKGVDILIGTTGRIIDYVRQGVINLSAIQAVVLDEAD 168
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_PECCP (ATP-dependent RNA helicase rhlB OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rhlB PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16 Identity = 52/158 (32.91%), Postives = 79/158 (50.00%), Query Frame = 3 Query: 252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 F L ++ + + GF + IQ + G DV QAQ+GTGKT F + L + Q +AL++APTRELA QI AL G+K+ GG + ++L+ GV +++GT GR+ D ++ + I++ VLDEAD Sbjct: 11 FSDFALHPQVIEALESKGFHNCTPIQALALPLALSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPANAERQTNQPRALIMAPTRELAVQIHSDAEALSHLTGLKLGLAYGGDGYDKQLKVLENGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_KLEP7 (ATP-dependent RNA helicase rhlB OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rhlB PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16 Identity = 52/158 (32.91%), Postives = 80/158 (50.63%), Query Frame = 3 Query: 252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 F L ++ + GF + IQ + +G DV QAQ+GTGKT F + L D + Q +AL++APTRELA QI L G+K+ GG + ++L++GV +++GT GR+ D ++ + I++ VLDEAD Sbjct: 11 FSDFALHPAVIEALEKKGFHNCTPIQALALPLTLEGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRQVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_KLEP3 (ATP-dependent RNA helicase rhlB OS=Klebsiella pneumoniae (strain 342) GN=rhlB PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16 Identity = 52/158 (32.91%), Postives = 80/158 (50.63%), Query Frame = 3 Query: 252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 F L ++ + GF + IQ + +G DV QAQ+GTGKT F + L D + Q +AL++APTRELA QI L G+K+ GG + ++L++GV +++GT GR+ D ++ + I++ VLDEAD Sbjct: 11 FSDFALHPAVIEALEKKGFHNCTPIQALALPLTLEGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRQVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_HAMD5 (ATP-dependent RNA helicase rhlB OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=rhlB PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16 Identity = 52/158 (32.91%), Postives = 80/158 (50.63%), Query Frame = 3 Query: 252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV----QCQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 F L +++ I GF + IQ G DV QAQ+GTGKT F + + L QC+ AL++ PTRELA QI L + +K+ GG + +IL++GV +++GTPGR+ D ++ + + +++ VLDEAD Sbjct: 11 FSDFALHPLVIKAIENQGFYHCTPIQALSFPITLAGRDVAAQAQTGTGKTLAFLASVFNYLLTNAADETRQCEQPRALIMVPTRELAIQIYTDAETLSQFTSLKMGLAYGGDGYDKQLKILESGVDILIGTPGRIIDYAKQNFIHLNALQVIVLDEAD 168
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH20_ARATH (DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana GN=RH20 PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16 Identity = 64/209 (30.62%), Postives = 98/209 (46.89%), Query Frame = 3 Query: 126 DMAGLAPEGSQFD------ARQYDTKMNEL-----LSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQA-----LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 D+ GL P F A DT++ E ++ +G+D + SF +G + +L + GF +P+ IQ +G KG D+I A++G+GKT ++ + ++ + LVLAPTRELA QI++ G +K GG R LQ GV +V+ TPGR+ DM+ + + VLDEAD Sbjct: 52 DLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDI----PKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEAD 256
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH10_ARATH (DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis thaliana GN=RH10 PE=2 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16 Identity = 60/170 (35.29%), Postives = 86/170 (50.59%), Query Frame = 3 Query: 234 DEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQ------------ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFD-MLRRQSLRPDYIKMFVLDEAD 704 +EV +F +G++E L++ G++ PS IQ + +G DVI AQ+G+GKT F ILQ L + + A VL+PTRELA QI + ALG + ++ VGG + L HV+V TPGR++D M + +K VLDEAD Sbjct: 5 NEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEAD 174
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: MAK5_NEOFI (ATP-dependent RNA helicase mak5 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=mak5 PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16 Identity = 71/204 (34.80%), Postives = 109/204 (53.43%), Query Frame = 3 Query: 165 ARQYDTKMNELLSTDG-QDFFTSYDEVYD--SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL------DYGLVQCQ---------ALVLAPTRELAQQIEK---VMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSL--RPDYIKMFVLDEAD 704 A Q+DT +N LS QD T D+ D ++D++GL +L G+ F P+++Q+ I +G DVI +A +G+GKT F IL+ D + + AL+L+PTRELA Q+ K + A + ++ GG SV++ QR+L +G +V+GTPGRV+++L Q L + IK V+DEAD Sbjct: 173 AIQHDTSINAGLSFAALQD--TEEDDGADVSAWDSLGLSPEILTGLSKMKFASPTSVQEACIPQILEGHDVIGKASTGSGKTLAFGIPILEHYLEKKRDDISAEKEKKSEKDSTPIALILSPTRELAHQLSKHIGELIAQAPGVNARIALLTGGLSVQKQQRLL-SGADIVIGTPGRVWEILSTGQGLIRKMQQIKFLVVDEAD 373
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: MAK5_GIBZE (ATP-dependent RNA helicase MAK5 OS=Gibberella zeae GN=MAK5 PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16 Identity = 64/179 (35.75%), Postives = 99/179 (55.31%), Query Frame = 3 Query: 207 DGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGI------LQQLDYGLVQC--QALVLAPTRELAQQIEKVMRALGDYLGVKVHACV--GGTSVREDQRILQAGVHVVVGTPGRVFDML---RRQSLRPDYIKMFVLDEAD 704 DG D+ D ++ ++ L ++ I F KP+ IQ+R I G DVI +AQ+G+GKT F GI L+ + G+ + +LVL+PTRELA+Q+ ++AL D L + CV GG S+ + QR L+ +V+GTPGR++++L R + I+ V+DEAD Sbjct: 202 DGNDYKDQEDVDMAAWVSLNLSPQIISAIAKLKFMKPTKIQKRTIPEIVAGHDVIGKAQTGSGKTLAF--GIPMVERWLEMQEQGVKRTGPMSLVLSPTRELAKQLGDHLKALCDGLPSAPYVCVVTGGLSILKQQRQLEK-ADIVIGTPGRLWEVLSGDRALQSKFAKIRFLVVDEAD 377
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: HAS1_DEBHA (ATP-dependent RNA helicase HAS1 OS=Debaryomyces hansenii GN=HAS1 PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16 Identity = 58/163 (35.58%), Postives = 86/163 (52.76%), Query Frame = 3 Query: 234 DEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL-----VQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEAD 704 D V D+F+ GL E L+ I GF K + +Q + I P G DV+ A++G+GKT F ++ L Y L +V++PTRELA QI V R L + +GG + R++ L GV++++ TPGR+ D L+ Q +K V+DEAD Sbjct: 100 DIVTDNFEEAGLSEPTLKAIKDMGFSKMTQVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEML-YSLRFKPRNGTGVVVVSPTRELALQIFGVARELMAHHSQTFGIVIGGANRRQEAEKLMKGVNLLIATPGRLLDHLQNTQGFVFKNVKALVIDEAD 261 The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bpback to top |