CN189435

Overview
NameCN189435
Unique NameCN189435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3195 contig Csv1_Contig3195:82..789. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX54_DICDI (ATP-dependent RNA helicase ddx54 OS=Dictyostelium discoideum GN=helA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 51/153 (33.33%), Postives = 83/153 (54.25%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-DYG-LVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F +M L +NLL+ I   GF  P+ IQ++ I     G D++  A++G+GKT  F   ++Q+L D+   V  +A++L+PTRELA Q  KV++       ++    VGG S+ +    L     +++ TPGR+   L    +    ++  V DEAD
Sbjct:  232 FQSMDLTKNLLKAILKKGFNVPTPIQRKSIPMILDGHDIVGMARTGSGKTGAFVIPMIQKLGDHSTTVGVRAVILSPTRELAIQTFKVVKDFSQGTQLRTILIVGGDSMEDQFTDLARNPDIIIATPGRLMHHLLETGMSLSKVQYIVFDEAD 384          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX49_MOUSE (Probable ATP-dependent RNA helicase DDX49 OS=Mus musculus GN=Ddx49 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 58/152 (38.16%), Postives = 78/152 (51.32%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLR-RQSLRPDYIKMFVLDEAD 704
            F  +GL   L+      G ++P+ +Q   I    +G D +  A++G+GKTA F   ILQ+L         LVL PTRELA QI +  R LG  LG+K    VGG  +      L    HVV+ TPGR+ D LR   +     I+  V+DEAD
Sbjct:    4 FAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRLADHLRSSNTFNMKKIQFLVMDEAD 155          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX49_HUMAN (Probable ATP-dependent RNA helicase DDX49 OS=Homo sapiens GN=DDX49 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 58/152 (38.16%), Postives = 78/152 (51.32%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLR-RQSLRPDYIKMFVLDEAD 704
            F  +GL   L+      G ++P+ +Q   I    +G D +  A++G+GKTA F   ILQ+L         LVL PTRELA QI +  R LG  LG+K    VGG  +      L    HVV+ TPGR+ D LR   +     I+  V+DEAD
Sbjct:    4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEAD 155          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX46_RAT (Probable ATP-dependent RNA helicase DDX46 OS=Rattus norvegicus GN=Ddx46 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 54/155 (34.84%), Postives = 83/155 (53.55%), Query Frame = 3
Query:  264 GLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL--DYGLVQCQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIK---MFVLDEAD 704
            G+   +L  +  +G+EKP+ IQ + I     G D+I  A++G+GKT  F   + + +     L + +   A+++ PTRELA QI K  +     LG++V    GGT + E    L+ G  ++V TPGR+ DML   S R   ++     VLDEAD
Sbjct:  378 GISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEAD 532          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX46_PONAB (Probable ATP-dependent RNA helicase DDX46 OS=Pongo abelii GN=DDX46 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 54/155 (34.84%), Postives = 83/155 (53.55%), Query Frame = 3
Query:  264 GLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL--DYGLVQCQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIK---MFVLDEAD 704
            G+   +L  +  +G+EKP+ IQ + I     G D+I  A++G+GKT  F   + + +     L + +   A+++ PTRELA QI K  +     LG++V    GGT + E    L+ G  ++V TPGR+ DML   S R   ++     VLDEAD
Sbjct:  378 GISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEAD 532          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX46_MOUSE (Probable ATP-dependent RNA helicase DDX46 OS=Mus musculus GN=Ddx46 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 54/155 (34.84%), Postives = 83/155 (53.55%), Query Frame = 3
Query:  264 GLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL--DYGLVQCQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIK---MFVLDEAD 704
            G+   +L  +  +G+EKP+ IQ + I     G D+I  A++G+GKT  F   + + +     L + +   A+++ PTRELA QI K  +     LG++V    GGT + E    L+ G  ++V TPGR+ DML   S R   ++     VLDEAD
Sbjct:  378 GISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEAD 532          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX46_HUMAN (Probable ATP-dependent RNA helicase DDX46 OS=Homo sapiens GN=DDX46 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 54/155 (34.84%), Postives = 83/155 (53.55%), Query Frame = 3
Query:  264 GLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL--DYGLVQCQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIK---MFVLDEAD 704
            G+   +L  +  +G+EKP+ IQ + I     G D+I  A++G+GKT  F   + + +     L + +   A+++ PTRELA QI K  +     LG++V    GGT + E    L+ G  ++V TPGR+ DML   S R   ++     VLDEAD
Sbjct:  378 GISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEAD 532          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP8_COCIM (ATP-dependent RNA helicase DBP8 OS=Coccidioides immitis GN=DBP8 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 55/156 (35.26%), Postives = 81/156 (51.92%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDY----IKMFVLDEAD 704
            SF ++GL   L+  + A    +P+AIQ+  I    KG D I  +++G+GKT  F + IL +         A+VL PTRELA QI +  +A+     +K     GG+ +R     L    HVV+ TPGR+ D ++       Y    ++M VLDEAD
Sbjct:  107 SFSSLGLAPWLVGSLSAMAIRRPTAIQRACIPEILKGRDCIGGSRTGSGKTVAFAAPILHRWSEDPFGIFAVVLTPTRELALQIFEQFKAISAPQSLKPVLITGGSEMRPQAIALSTRPHVVIATPGRLADHIKTSGQDTIYGLNRVRMVVLDEAD 262          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP4_NEOFI (ATP-dependent RNA helicase dbp4 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp4 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 59/162 (36.42%), Postives = 91/162 (56.17%), Query Frame = 3
Query:  237 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQ-----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDY-IKMFVLDEAD 704
            E + SF  + L E    G+ +  ++  + IQ R I    KG DV+  A++G+GKT  F   +L+ L Y     +     AL+L+PTRELA QI +V+R +G Y        +GG S++E+Q  L   ++++V TPGR+   L + +L   Y ++M VLDEAD
Sbjct:   44 ETFKSFSDLPLSEPTASGLASSHYKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPVLENL-YRKQWAEHDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLKEEQERL-GRMNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEAD 203          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP2_CHAGB (ATP-dependent RNA helicase DBP2 OS=Chaetomium globosum GN=DBP2 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 54/158 (34.18%), Postives = 78/158 (49.37%), Query Frame = 3
Query:  246 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQA-----LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            ++FD  G    ++  + A GF  P+AIQ +G      G DV+  A++G+GKT T+C   +  ++   +         LVLAPTRELA QI++ +   G    ++     GG       R L  GV V + TPGR+ DML         +   VLDEAD
Sbjct:  136 ETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGPQTRDLSRGVEVCIATPGRLIDMLESGRTNLRRVTYLVLDEAD 293          
The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DDX54_DICDI2.333e-1633.33ATP-dependent RNA helicase ddx54 OS=Dictyostelium ... [more]
DDX49_MOUSE2.333e-1638.16Probable ATP-dependent RNA helicase DDX49 OS=Mus m... [more]
DDX49_HUMAN2.333e-1638.16Probable ATP-dependent RNA helicase DDX49 OS=Homo ... [more]
DDX46_RAT2.333e-1634.84Probable ATP-dependent RNA helicase DDX46 OS=Rattu... [more]
DDX46_PONAB2.333e-1634.84Probable ATP-dependent RNA helicase DDX46 OS=Pongo... [more]
DDX46_MOUSE2.333e-1634.84Probable ATP-dependent RNA helicase DDX46 OS=Mus m... [more]
DDX46_HUMAN2.333e-1634.84Probable ATP-dependent RNA helicase DDX46 OS=Homo ... [more]
DBP8_COCIM2.333e-1635.26ATP-dependent RNA helicase DBP8 OS=Coccidioides im... [more]
DBP4_NEOFI2.333e-1636.42ATP-dependent RNA helicase dbp4 OS=Neosartorya fis... [more]
DBP2_CHAGB2.333e-1634.18ATP-dependent RNA helicase DBP2 OS=Chaetomium glob... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bp
GCAGGCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCAATC
TTCTCCTTCTCTTTGAAAAAAAAAAGAAAACCAACTCTTTCTCTCCATTT
TAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAG
GATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGCTC
TCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAG
TTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCTT
ATGGGTTTGAGAAGCCTTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTC
TGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAAC
AGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCC
AATGTCAGGCCCTGGTGTTGGCACCCACTAGGGAACTAGCTCAACAAATT
GAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGC
TTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCTG
GTGTTCATGTTGTTGTTGGCACTCCTGGTCGTGTGTTTGACATGCTGCGC
CGACAGTCTTTACGCCCTGATTACATTAAGATGTTTGTACTGGATGAGGC
TGATGAAAT
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