CN189435

Overview
NameCN189435
Unique NameCN189435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3195 contig Csv1_Contig3195:82..789. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: FAL1_ASPTN (ATP-dependent RNA helicase fal1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=fal1 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.601e-49
Identity = 103/168 (61.31%), Postives = 125/168 (74.40%), Query Frame = 3
Query:  207 DGQDFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            D  +F TS +  V  +F+ M L+E+LLRGIYAYG+E PSA+Q R IV  CKG D I QAQSGTGKTATF   ILQ +D  + + QALVL+PTRELA QI+ V+ ALGDY+ V+ HAC+GGT++ ED R L  G HVV GTPGRV DM+RR+ LR  +IKM VLDEADE
Sbjct:   11 DRMEFNTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFAISILQVIDTVVRESQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADE 178          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: FAL1_ASPNC (ATP-dependent RNA helicase fal1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=fal1 PE=3 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 2.091e-49
Identity = 103/168 (61.31%), Postives = 125/168 (74.40%), Query Frame = 3
Query:  207 DGQDFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            D  +F TS +  V  +F+ M L+E+LLRGIYAYG+E PSA+Q R IV  CKG D I QAQSGTGKTATF   ILQ +D  + + QALVL+PTRELA QI+ V+ ALGDY+ V+ HAC+GGT++ ED R L  G HVV GTPGRV DM+RR+ LR  +IKM VLDEADE
Sbjct:   11 DRMEFNTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVVRESQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADE 178          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: FAL1_NEOFI (ATP-dependent RNA helicase fal1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=fal1 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.731e-49
Identity = 103/168 (61.31%), Postives = 125/168 (74.40%), Query Frame = 3
Query:  207 DGQDFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            D  +F TS +  V  +F+ M L+E+LLRGIYAYG+E PSA+Q R IV  CKG D I QAQSGTGKTATF   ILQ +D  + + QALVL+PTRELA QI+ V+ ALGDY+ V+ HAC+GGT++ ED R L  G HVV GTPGRV DM+RR+ LR  +IKM VLDEADE
Sbjct:   11 DRLEFSTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVVRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADE 178          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: IF4A_DICDI (Eukaryotic initiation factor 4A OS=Dictyostelium discoideum GN=tifA PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.658e-49
Identity = 101/175 (57.71%), Postives = 129/175 (73.71%), Query Frame = 3
Query:  201 STDGQDF-----FTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            S DG  F     FTS + EV  +F++MGL+E LLRGI+ YGFEKPSAIQQR I+P  KG D I QAQSGTGKTATF  G LQ ++  +   Q L+L+PTRELAQQI+KV  AL +++ ++VHACVGG ++ +D + L+ GVH+V GTPGRV DM+ R+SL   +IKM +LDEADE
Sbjct:   11 SNDGSSFKLNETFTSSEVEVKPTFESMGLREELLRGIFNYGFEKPSAIQQRAILPIIKGRDTIAQAQSGTGKTATFSIGALQCVEVNVRSPQVLILSPTRELAQQIQKVALALSEFMNIQVHACVGGKNLSDDVKKLETGVHIVSGTPGRVLDMITRKSLPTRHIKMMILDEADE 185          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH2_ORYSJ (DEAD-box ATP-dependent RNA helicase 2 OS=Oryza sativa subsp. japonica GN=Os01g0639100 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.083e-49
Identity = 94/157 (59.87%), Postives = 122/157 (77.71%), Query Frame = 3
Query:  237 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            EV  SFD MG++++LLRGIYAYGFEKPSAIQQR ++P   G DVI QAQSGTGKT+     + Q +D  + + QAL+L+PTRELA Q E+VM A+GD++ ++VHAC+GG S+ ED R L+ GVHVV GTPGRV DM++R++LR   IK+ +LDEADE
Sbjct:   28 EVISSFDQMGIRDDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAIGDFINIQVHACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADE 184          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: FAL1_SCHPO (ATP-dependent RNA helicase fal1 OS=Schizosaccharomyces pombe GN=tif412 PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.083e-49
Identity = 96/153 (62.75%), Postives = 118/153 (77.12%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            SF+ M L+E+LLRGIYAYG+E PSA+Q R I+  CKG DVI QAQSGTGKTATF  GILQ +D  +   QAL+L+PTRELA QI+ V+ ALGD++ V+ HAC+GGTSV  D + L  G HVV GTPGRV DM+RR++LR   +KM +LDEADE
Sbjct:   22 SFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADE 174          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: FAL1_PICGU (ATP-dependent RNA helicase FAL1 OS=Pichia guilliermondii GN=FAL1 PE=3 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 6.083e-49
Identity = 93/157 (59.24%), Postives = 118/157 (75.16%), Query Frame = 3
Query:  237 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            ++Y +F++M L+  LL+GIY YGFE PSAIQ R I+   +G D I QAQSGTGKTATF  GIL  +D     CQALVL+PTRELAQQIE V+  LGDY+ V+ HAC+GGT V ED + LQ G H++ GTPGRV DM++R+++ P ++KM VLDEADE
Sbjct:   21 KIYPTFESMNLKPELLKGIYNYGFEAPSAIQSRAIMQIIRGRDTIAQAQSGTGKTATFSIGILSSIDTKSKDCQALVLSPTRELAQQIENVIEHLGDYMNVRSHACIGGTQVGEDVKKLQQGQHIISGTPGRVLDMIKRRNIMPRHVKMLVLDEADE 177          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: FAL1_EMENI (ATP-dependent RNA helicase fal1 OS=Emericella nidulans GN=fal1 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.945e-49
Identity = 102/168 (60.71%), Postives = 124/168 (73.81%), Query Frame = 3
Query:  207 DGQDFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            D  +F TS +  V  +F+ M L+E+LLRGIYAYG+E PSA+Q R IV  CKG D I QAQSGTGKTATF    LQ +D  + + QALVL+PTRELA QI+ V+ ALGDY+ V+ HAC+GGT++ ED R L  G HVV GTPGRV DM+RR+ LR  +IKM VLDEADE
Sbjct:   11 DKMEFNTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISALQVIDTVVRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADE 178          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: IF4A_PICGU (ATP-dependent RNA helicase eIF4A OS=Pichia guilliermondii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.355e-48
Identity = 95/172 (55.23%), Postives = 123/172 (71.51%), Query Frame = 3
Query:  192 ELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            E    D     T+YD V  SFD + L+ N++RGI+ YG+E PSAIQQR I+P  +G DV+ QAQSGTGKTATF    LQ++D  L   QAL+LAPTRELA QI+ V+  +G YL V VHA +GGTS+++D    ++GV +VVGTPGRVFDM+ R+  R D +KMF++DEADE
Sbjct:    4 EFNEIDANTIETNYDNVVYSFDDLNLKPNIVRGIFGYGYESPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENLKATQALILAPTRELALQIQNVITHIGLYLNVTVHASIGGTSMKDDIEAFKSGVQIVVGTPGRVFDMIERRFFRTDKVKMFIMDEADE 175          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: IF4A_KLULA (ATP-dependent RNA helicase eIF4A OS=Kluyveromyces lactis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.019e-48
Identity = 95/167 (56.89%), Postives = 122/167 (73.05%), Query Frame = 3
Query:  207 DGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            D     ++YD+V  SFD + L+E LLRGI+ YGF +PSAIQQR I+P  +G DV+ QAQSGTGKT TF    LQ +D  +   Q L+LAPTRELA QI+KV+ AL  ++ VKVHAC+GGTS++ED   L+ G  ++VGTPGRVFDM+ R+  + D IKMF+LDEADE
Sbjct:    9 DENQIQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADE 175          
The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FAL1_ASPTN1.601e-4961.31ATP-dependent RNA helicase fal1 OS=Aspergillus ter... [more]
FAL1_ASPNC2.091e-4961.31ATP-dependent RNA helicase fal1 OS=Aspergillus nig... [more]
FAL1_NEOFI2.731e-4961.31ATP-dependent RNA helicase fal1 OS=Neosartorya fis... [more]
IF4A_DICDI4.658e-4957.71Eukaryotic initiation factor 4A OS=Dictyostelium d... [more]
RH2_ORYSJ6.083e-4959.87DEAD-box ATP-dependent RNA helicase 2 OS=Oryza sat... [more]
FAL1_SCHPO6.083e-4962.75ATP-dependent RNA helicase fal1 OS=Schizosaccharom... [more]
FAL1_PICGU6.083e-4959.24ATP-dependent RNA helicase FAL1 OS=Pichia guillier... [more]
FAL1_EMENI7.945e-4960.71ATP-dependent RNA helicase fal1 OS=Emericella nidu... [more]
IF4A_PICGU1.355e-4855.23ATP-dependent RNA helicase eIF4A OS=Pichia guillie... [more]
IF4A_KLULA3.019e-4856.89ATP-dependent RNA helicase eIF4A OS=Kluyveromyces ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bp
GCAGGCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCAATC
TTCTCCTTCTCTTTGAAAAAAAAAAGAAAACCAACTCTTTCTCTCCATTT
TAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAG
GATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGCTC
TCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAG
TTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCTT
ATGGGTTTGAGAAGCCTTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTC
TGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAAC
AGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCC
AATGTCAGGCCCTGGTGTTGGCACCCACTAGGGAACTAGCTCAACAAATT
GAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGC
TTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCTG
GTGTTCATGTTGTTGTTGGCACTCCTGGTCGTGTGTTTGACATGCTGCGC
CGACAGTCTTTACGCCCTGATTACATTAAGATGTTTGTACTGGATGAGGC
TGATGAAAT
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