CN189434

Overview
NameCN189434
Unique NameCN189434
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DDX25_HUMAN (ATP-dependent RNA helicase DDX25 OS=Homo sapiens GN=DDX25 PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 2.502e-34
Identity = 75/171 (43.86%), Postives = 108/171 (63.16%), Query Frame = -1
Query:  215 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP------ENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVAD 709
            ELTL  I+Q+YV  E  + K + LC++Y ++ I Q++IF  TRR   WLT +M    H VS   G++    R  I++ FR G  +VLITT++ ARGIDV+QV++V+N+DLP +       E YLHRIGR+GRFG+KG+A N +  D+   L  IQ  +N  I++L +   D
Sbjct:  306 ELTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIKQLNAEDMD 476          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DBP5_PICST (ATP-dependent RNA helicase DBP5 OS=Pichia stipitis GN=DBP5 PE=3 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 2.502e-34
Identity = 75/170 (44.12%), Postives = 112/170 (65.88%), Query Frame = -1
Query:  224 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT------QPENYLHRIGRSGRFGRKGVAINFV-TRDDERMLFDIQKFY-NVVIEELPSN 709
            EL ++GIKQ Y++ + E+ K E LC+LY  L I  S+IFV  +   + L  KM++  H  S  HG ++ + RD ++ +FR G S+VLITT++LARGID+  VS+V+NYDLPT       P  YLHRIGR+GRFGR GV+I+F+  +    +L  I+ ++ NV +  +P++
Sbjct:  316 ELNVDGIKQLYMDCDSEKHKFEVLCELYGLLTIGSSIIFVERKDTANLLYAKMKAEGHACSILHGGLETSERDRLIDDFREGRSKVLITTNVLARGIDIASVSMVVNYDLPTDKDGNADPSTYLHRIGRTGRFGRVGVSISFIYDKRSYEILMKIKDYFGNVEMTRVPTD 485          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DDX25_MOUSE (ATP-dependent RNA helicase DDX25 OS=Mus musculus GN=Ddx25 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.267e-34
Identity = 74/165 (44.85%), Postives = 104/165 (63.03%), Query Frame = -1
Query:  233 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP------ENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEEL 709
            ELTL  I+Q+YV  E  + K + LC++Y  + I Q++IF  TRR   WLT +M    H VS   G++    R  I++ FR G  +VLITT++ ARGIDV+QV++V+N+DLP         E YLHRIGR+GRFG+KG+A N +  D   +L  IQ  +N  I++L
Sbjct:  307 ELTLNNIRQYYVLCENRKGKYQALCNIYGGITIGQAIIFCQTRRNAKWLTVEMMQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVNQSEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDKLPLLMKIQDHFNSNIKQL 471          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DDX25_RAT (ATP-dependent RNA helicase DDX25 OS=Rattus norvegicus GN=Ddx25 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 4.267e-34
Identity = 74/165 (44.85%), Postives = 104/165 (63.03%), Query Frame = -1
Query:  233 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP------ENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEEL 709
            ELTL  I+Q+YV  E  + K + LC++Y  + I Q++IF  TRR   WLT +M    H VS   G++    R  I++ FR G  +VLITT++ ARGIDV+QV++V+N+DLP         E YLHRIGR+GRFG+KG+A N +  D   +L  IQ  +N  I++L
Sbjct:  306 ELTLNNIRQYYVLCENRKDKYQALCNIYGGITIGQAIIFCQTRRNAKWLTVEMMQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVNQSEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDKLPLLMKIQDHFNSSIKQL 470          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DBP5_YEAST (ATP-dependent RNA helicase DBP5 OS=Saccharomyces cerevisiae GN=DBP5 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.573e-34
Identity = 74/159 (46.54%), Postives = 107/159 (67.30%), Query Frame = -1
Query:  254 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT------QPENYLHRIGRSGRFGRKGVAINFV-TRDDERMLFDIQKFY 709
            E+ ++ IKQ Y++ + E  K + L +LY  + I  S+IFV T++  + L  K++S  H VS  HGD+    RD ++ +FR G S+VLITT++LARGID+  VS+V+NYDLPT       P  Y+HRIGR+GRFGRKGVAI+FV  ++   +L  IQK++
Sbjct:  298 EVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYF 456          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DBP5_YEAS7 (ATP-dependent RNA helicase DBP5 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP5 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.573e-34
Identity = 74/159 (46.54%), Postives = 107/159 (67.30%), Query Frame = -1
Query:  254 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT------QPENYLHRIGRSGRFGRKGVAINFV-TRDDERMLFDIQKFY 709
            E+ ++ IKQ Y++ + E  K + L +LY  + I  S+IFV T++  + L  K++S  H VS  HGD+    RD ++ +FR G S+VLITT++LARGID+  VS+V+NYDLPT       P  Y+HRIGR+GRFGRKGVAI+FV  ++   +L  IQK++
Sbjct:  298 EVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYF 456          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DBP5_LODEL (ATP-dependent RNA helicase DBP5 OS=Lodderomyces elongisporus GN=DBP5 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.573e-34
Identity = 74/161 (45.96%), Postives = 106/161 (65.84%), Query Frame = -1
Query:  248 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP------TQPENYLHRIGRSGRFGRKGVAINFVTRD-DERMLFDIQKFYNV 709
            EL ++GIKQ Y++ + +E K E LC+LY  L I  S+IFV  +   D L  +M+   HTVS  HG ++   RD ++ +FR G S+VLITT++LARGID+  VS+V+NYDLP        P  YLHRIGR+GRFGR GV+++FV  + D + L  I +++ +
Sbjct:  322 ELNVKGIKQLYMDCKNQEHKFEVLCELYGLLTIGSSIIFVEQKATADSLYLRMKEEGHTVSILHGGLEVADRDRLIDDFREGRSKVLITTNVLARGIDIATVSMVVNYDLPRTKEGRPDPSTYLHRIGRTGRFGRVGVSVSFVANEKDYQTLKYIAEYFGI 482          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DBP5_PICGU (ATP-dependent RNA helicase DBP5 OS=Pichia guilliermondii GN=DBP5 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.278e-34
Identity = 74/172 (43.02%), Postives = 112/172 (65.12%), Query Frame = -1
Query:  224 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT------QPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK----FYNVVIEELPSN 709
            EL ++ IKQ Y++ + E+ K E L +LY  L I  S+IFV T+   ++L  KM+S  H  S  H D+D + RD ++ +FR G S+VLITT++LARGID+  VS+V+NYD+P        P  YLHRIGR+GRFGR GVA++FV   D++   D+++    F ++ +  +P++
Sbjct:  298 ELNVDAIKQLYMDCDSEKHKAEVLSELYGLLTIGSSIIFVKTKATANYLYAKMKSEGHACSILHSDLDNSERDKLIDDFREGRSKVLITTNVLARGIDIASVSMVVNYDIPVDKDDKPDPSTYLHRIGRTGRFGRVGVAVSFV--HDKKSYEDLEQIRSYFNDIEMTRVPTD 467          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DBP5_PHANO (ATP-dependent RNA helicase DBP5 OS=Phaeosphaeria nodorum GN=DBP5 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.506e-34
Identity = 74/170 (43.53%), Postives = 110/170 (64.71%), Query Frame = -1
Query:  224 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT-------QPENYLHRIGRSGRFGRKGVAINFV-TRDDERMLFDIQKFYNVVIEELPSN 709
            ELT+EGIKQ Y++++K++ K  TL   Y  +    S+IFV TRR  + L  +M +  H V+   G ++   RD ++ +FRSG ++VLITT++LARGIDV+ V++VINYD+PT        PE YLHRIGR+GRFGR GVA+ FV  +   + L DI  ++   +  + ++
Sbjct:  271 ELTIEGIKQLYIDIDKDQDKYSTLLKFYGLMTQASSIIFVRTRRTAEELERRMVAEGHKVAQLSGALEGQDRDRVIDQFRSGEAKVLITTNVLARGIDVESVTMVINYDVPTMADGREADPETYLHRIGRTGRFGRVGVALTFVHDKASWQQLHDIASYFKTDLHPIDTS 440          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DBP5_KLULA (ATP-dependent RNA helicase DBP5 OS=Kluyveromyces lactis GN=DBP5 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.621e-33
Identity = 75/173 (43.35%), Postives = 112/173 (64.74%), Query Frame = -1
Query:  215 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT------QPENYLHRIGRSGRFGRKGVAINFV-TRDDERMLFDIQKFY-NVVIEELPSNVAD 709
            E+ +  IKQ +++ + EE K   L +LY  L I  S+IFV T++  + L  K++   H VS  HGD+    RD ++ +FR G S+VLITT++LARGID+  VS+V+NYDLPT       P  Y+HRIGR+GRFGR GVAI+F+  +    +L  IQK++ ++ I ++P++  D
Sbjct:  285 EVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHRIGRTGRFGRTGVAISFIHDKKSFEVLSAIQKYFGDIEITKVPTDDLD 457          
The following BLAST results are available for this feature:
BLAST of CN189434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DDX25_HUMAN2.502e-3443.86ATP-dependent RNA helicase DDX25 OS=Homo sapiens G... [more]
DBP5_PICST2.502e-3444.12ATP-dependent RNA helicase DBP5 OS=Pichia stipitis... [more]
DDX25_MOUSE3.267e-3444.85ATP-dependent RNA helicase DDX25 OS=Mus musculus G... [more]
DDX25_RAT4.267e-3444.85ATP-dependent RNA helicase DDX25 OS=Rattus norvegi... [more]
DBP5_YEAST5.573e-3446.54ATP-dependent RNA helicase DBP5 OS=Saccharomyces c... [more]
DBP5_YEAS75.573e-3446.54ATP-dependent RNA helicase DBP5 OS=Saccharomyces c... [more]
DBP5_LODEL5.573e-3445.96ATP-dependent RNA helicase DBP5 OS=Lodderomyces el... [more]
DBP5_PICGU7.278e-3443.02ATP-dependent RNA helicase DBP5 OS=Pichia guillier... [more]
DBP5_PHANO9.506e-3443.53ATP-dependent RNA helicase DBP5 OS=Phaeosphaeria n... [more]
DBP5_KLULA1.621e-3343.35ATP-dependent RNA helicase DBP5 OS=Kluyveromyces l... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N15_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189434 ID=CN189434; Name=CN189434; organism=Citrus sinensis; type=EST; length=709bp
CCCTTTTTTTTTCAATGTGCATGACCCATATGATTAAATGGTCGGATATG
TTTGAGAACAACATTAATTTAAGACACTAGACGGAAAGGAAGAAGAAACC
AAAAAAAAAAAAAAAAGGGGAGAAAATATCCACCACATTAAATAGTACTT
GCAAAATCAGGAAACCCCTTCTTGCCTCGACAAACTTACAAAAAACAGAA
CCTCCTCAAAGAAGGTCAGCAACATTTGAAGGCAGCTCCTCAATGACCAC
GTTATAGAACTTTTGAATATCAAAAAGCATTCTCTCATCATCCCTTGTCA
CAAAATTAATGGCAACACCCTTTCTTCCAAATCGACCACTTCGTCCAATA
CGGTGAAGGTAGTTTTCTGGTTGAGTCGGCAGATCATAATTTATGACAAG
TGAAACTTGCTGCACATCAATACCACGAGCCAACAGATCAGTGGTGATGA
GAACACGAGAAGAACCAGAGCGAAATTCACGCATAATGATATCTCGGGTG
TTCTGATCCATGTCCCCATGAGTGGCAGAGACTGTATGGTCACGGCTTCG
CATCTTGTCAGTAAGCCAGTCGACCTTTCGCCGAGTGTTCACAAAGATGA
CACTCTGGGTTATGGCCAGAGTCTCATAAAGATCACAGAGTGTTTCAAGC
TTCCATTCTTCCTTCTCAACATTGACATAAAACTGCTTGATACCCTCAAG
GGTGAGTTC
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