CN189434

Overview
NameCN189434
Unique NameCN189434
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DDX25_BOVIN (ATP-dependent RNA helicase DDX25 OS=Bos taurus GN=DDX25 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.118e-33
Identity = 73/165 (44.24%), Postives = 104/165 (63.03%), Query Frame = -1
Query:  233 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP------ENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEEL 709
            ELTL  I+Q+YV     + K + LC++Y  + I Q++IF  TRR   WLT +M    H VS   G++  + R  I++ FR G  +VLITT++ ARGIDV+QV++V+N+DLP         E YLHRIGR+GRFG+KG+A N +  D   +L  IQ  +N  I++L
Sbjct:  306 ELTLNNIRQYYVLCGNRKDKYQALCNIYGGITIGQAIIFCQTRRNAKWLTVEMMQDGHQVSLLSGELTVDQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVNQAEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDKLPLLMKIQDHFNSSIKQL 470          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DBP5_NEOFI (ATP-dependent RNA helicase dbp5 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp5 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.766e-33
Identity = 79/171 (46.20%), Postives = 110/171 (64.33%), Query Frame = -1
Query:  233 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT--QP---------ENYLHRIGRSGRFGRKGVAINFVT-RDDERMLFDIQKFYNVVIEEL 709
            ELT+EGIKQ Y++    E K +TL  LY  L +  S+IFV TR     +  +M +  HTV +  G+ D + RD I+ +FR G ++VLI T++LARGIDV  VS+VINYD+P   QP         + YLHRIGR+GRFGR GV+I+FV+ R++  ML  IQ ++N  I+ +
Sbjct:  289 ELTVEGIKQLYLDCADGEDKYKTLVQLYGLLTVGSSIIFVQTRAAAQEIEKRMTAEGHTVVSLTGERDPSVRDAIIDQFRRGEAKVLIATNVLARGIDVSTVSMVINYDIPELHQPSVPGRQADFQTYLHRIGRTGRFGRVGVSISFVSNREEWEMLNQIQTYFNCEIQRV 459          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DBP5_AJECN (ATP-dependent RNA helicase DBP5 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=DBP5 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.766e-33
Identity = 77/171 (45.03%), Postives = 109/171 (63.74%), Query Frame = -1
Query:  233 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP-----------TQPENYLHRIGRSGRFGRKGVAINFVTRDDE-RMLFDIQKFYNVVIEEL 709
            ELT+EGIKQ Y++ + +E K + L   Y  L I  S+IFV TR     +  +M +  HTV +  G ++   RD I+ +FR G ++VLITT++LARGIDVQ VS+VINYD+P              + YLHRIGR+GRFGR GVA++FV   +E +ML DI+ ++N  I+ +
Sbjct:  299 ELTVEGIKQLYLDCDSDEHKFDILVKFYGLLTIGSSIIFVKTRASAVEIERRMVAEGHTVVSLTGGVEGQKRDEIIDKFRQGDAKVLITTNVLARGIDVQTVSMVINYDIPELHAPKATKRIADAQTYLHRIGRTGRFGRVGVAVSFVASKEEWQMLQDIKTYFNTEIQRV 469          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DDX19_DROME (DEAD-box helicase Dbp80 OS=Drosophila melanogaster GN=Dbp80 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.612e-33
Identity = 73/172 (42.44%), Postives = 112/172 (65.12%), Query Frame = -1
Query:  215 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP------TQPENYLHRIGRSGRFGRKGVAINFVTRDDE-RMLFDIQKFYNVVIEELPSNVAD 709
            E +LE IKQ+YV  + EE K   + ++Y  +++ Q++IF +T+R   WL  KM S  H+V+   GD+    R  ++  FRSG  +VLITT++L+RGID++Q+ +V+N+DLP         E YLHRIGR+GRFG+ G+AIN +T +   ++  DI+K +N  IE L ++ AD
Sbjct:  282 EESLENIKQYYVKCKNEEGKYNAIQNIYGCISVGQAIIFCHTKRTAAWLAAKMTSDGHSVAVLTGDLTVVQRLDVLDRFRSGLEKVLITTNILSRGIDIEQLQVVVNFDLPVDLDGMADCETYLHRIGRTGRFGKSGIAINLITDEKTMKVCSDIEKHFNKKIEVLNTDSAD 453          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DBP5_ASPFU (ATP-dependent RNA helicase dbp5 OS=Aspergillus fumigatus GN=dbp5 PE=3 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.718e-33
Identity = 79/171 (46.20%), Postives = 109/171 (63.74%), Query Frame = -1
Query:  233 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT--QP---------ENYLHRIGRSGRFGRKGVAINFVT-RDDERMLFDIQKFYNVVIEEL 709
            ELT+EGIKQ Y++    E K  TL  LY  L +  S+IFV TR     +  +M +  HTV +  G+ D + RD I+ +FR G ++VLI T++LARGIDV  VS+VINYD+P   QP         + YLHRIGR+GRFGR GV+I+FV+ R++  ML  IQ ++N  I+ +
Sbjct:  289 ELTVEGIKQLYLDCADGEDKYRTLVQLYGLLTVGSSIIFVQTRAAAQEIERRMTAEGHTVVSLTGERDPSVRDAIIDQFRRGEAKVLIATNVLARGIDVSTVSMVINYDIPELHQPNVPGRQADFQTYLHRIGRTGRFGRVGVSISFVSNREEWEMLNQIQTYFNCEIQRV 459          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DDX25_XENLA (ATP-dependent RNA helicase DDX25 OS=Xenopus laevis GN=deadsouth PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.161e-33
Identity = 70/167 (41.92%), Postives = 105/167 (62.87%), Query Frame = -1
Query:  227 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP------ENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPS 709
            ELTL+ I+QFY   E +E K   LC+LY  + I Q+++F  TR+   WL+ K+    H V+   G++    R  +++ FR G  +VL+TT++ ARGIDV+QVS+V+N+DLP         E YLHRIGR+GRFG+KG+A++ +      ML +I+  +N  I +L S
Sbjct:  306 ELTLKNIQQFYDQCENKEQKYSALCNLYGVITIAQAIVFCQTRKIASWLSQKLSDDGHQVALLSGELPVYDRADMIQRFREGREKVLVTTNVCARGIDVEQVSIVVNFDLPVNVDGSVDFETYLHRIGRTGRFGKKGIAVSLIENFFVYMLKEIEDHFNTKITKLNS 472          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DBP5_SCHPO (ATP-dependent RNA helicase dbp5 OS=Schizosaccharomyces pombe GN=dbp5 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.161e-33
Identity = 74/169 (43.79%), Postives = 110/169 (65.09%), Query Frame = -1
Query:  224 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP------TQPENYLHRIGRSGRFGRKGVAINFV-TRDDERMLFDIQKFYNVVIEELPSN 709
            EL++EGIKQ Y++ + EE K   L +LY  L I QS+IF   +   + +  +M +  HTV+   G+++   RD IM  FR G+S+VL+TT+++ARGIDV QV+LV+NYD+P        P+ YLHRIGR+GRFGR GV+INFV  +     +  IQ+++   I  +P++
Sbjct:  320 ELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTD 488          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DBP5_MAGGR (ATP-dependent RNA helicase DBP5 OS=Magnaporthe grisea GN=DBP5 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.161e-33
Identity = 79/168 (47.02%), Postives = 104/168 (61.90%), Query Frame = -1
Query:  233 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ--------PENYLHRIGRSGRFGRKGVAINFV-TRDDERMLFDIQKFYNVVIEEL 709
            ELT++GI Q Y++    + K E LC LY  + I  SVIFV TR   D +  +M +  H VSA HG      RD ++ +FRSG S+VLITT++LARGIDV  VS+VINYD+P +         E YLHRIGR+GRFGR GV+I+FV  R     L  I + Y + + +L
Sbjct:  304 ELTVKGISQMYMDCPSLKEKYEVLCKLYGLMTIGSSVIFVKTRESADEIQRRMEADGHKVSALHGAFQGQERDQLLDDFRSGKSKVLITTNVLARGIDVSSVSMVINYDIPMKGPGDQSPDAETYLHRIGRTGRFGRVGVSISFVHDRKSFTALSSIAEHYGIDLIQL 471          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DD19A_MOUSE (ATP-dependent RNA helicase DDX19A OS=Mus musculus GN=Ddx19a PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.047e-33
Identity = 73/172 (42.44%), Postives = 107/172 (62.21%), Query Frame = -1
Query:  215 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP------ENYLHRIGRSGRFGRKGVAINFV-TRDDERMLFDIQKFYNVVIEELPSNVAD 709
            E TL+ IKQ+YV     E K + LC+LY  + I Q++IF +TR+   WL  ++    H V+   G+M    R  ++  FR G  +VL+TT++ ARGIDV+QVS+VIN+DLP         E YLHRIGR+GRFG++G+A+N V ++    +L  IQ+ +N  IE L ++  D
Sbjct:  300 EETLDTIKQYYVLCNNREEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 471          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DD19B_HUMAN (ATP-dependent RNA helicase DDX19B OS=Homo sapiens GN=DDX19B PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.793e-32
Identity = 72/172 (41.86%), Postives = 107/172 (62.21%), Query Frame = -1
Query:  215 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP------ENYLHRIGRSGRFGRKGVAINFV-TRDDERMLFDIQKFYNVVIEELPSNVAD 709
            E TL+ IKQ+YV     + K + LC+LY  + I Q++IF +TR+   WL  ++    H V+   G+M    R  ++  FR G  +VL+TT++ ARGIDV+QVS+VIN+DLP         E YLHRIGR+GRFG++G+A+N V ++    +L  IQ+ +N  IE L ++  D
Sbjct:  301 EETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 472          
The following BLAST results are available for this feature:
BLAST of CN189434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DDX25_BOVIN2.118e-3344.24ATP-dependent RNA helicase DDX25 OS=Bos taurus GN=... [more]
DBP5_NEOFI2.766e-3346.20ATP-dependent RNA helicase dbp5 OS=Neosartorya fis... [more]
DBP5_AJECN2.766e-3345.03ATP-dependent RNA helicase DBP5 OS=Ajellomyces cap... [more]
DDX19_DROME3.612e-3342.44DEAD-box helicase Dbp80 OS=Drosophila melanogaster... [more]
DBP5_ASPFU4.718e-3346.20ATP-dependent RNA helicase dbp5 OS=Aspergillus fum... [more]
DDX25_XENLA6.161e-3341.92ATP-dependent RNA helicase DDX25 OS=Xenopus laevis... [more]
DBP5_SCHPO6.161e-3343.79ATP-dependent RNA helicase dbp5 OS=Schizosaccharom... [more]
DBP5_MAGGR6.161e-3347.02ATP-dependent RNA helicase DBP5 OS=Magnaporthe gri... [more]
DD19A_MOUSE8.047e-3342.44ATP-dependent RNA helicase DDX19A OS=Mus musculus ... [more]
DD19B_HUMAN1.793e-3241.86ATP-dependent RNA helicase DDX19B OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N15_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189434 ID=CN189434; Name=CN189434; organism=Citrus sinensis; type=EST; length=709bp
CCCTTTTTTTTTCAATGTGCATGACCCATATGATTAAATGGTCGGATATG
TTTGAGAACAACATTAATTTAAGACACTAGACGGAAAGGAAGAAGAAACC
AAAAAAAAAAAAAAAAGGGGAGAAAATATCCACCACATTAAATAGTACTT
GCAAAATCAGGAAACCCCTTCTTGCCTCGACAAACTTACAAAAAACAGAA
CCTCCTCAAAGAAGGTCAGCAACATTTGAAGGCAGCTCCTCAATGACCAC
GTTATAGAACTTTTGAATATCAAAAAGCATTCTCTCATCATCCCTTGTCA
CAAAATTAATGGCAACACCCTTTCTTCCAAATCGACCACTTCGTCCAATA
CGGTGAAGGTAGTTTTCTGGTTGAGTCGGCAGATCATAATTTATGACAAG
TGAAACTTGCTGCACATCAATACCACGAGCCAACAGATCAGTGGTGATGA
GAACACGAGAAGAACCAGAGCGAAATTCACGCATAATGATATCTCGGGTG
TTCTGATCCATGTCCCCATGAGTGGCAGAGACTGTATGGTCACGGCTTCG
CATCTTGTCAGTAAGCCAGTCGACCTTTCGCCGAGTGTTCACAAAGATGA
CACTCTGGGTTATGGCCAGAGTCTCATAAAGATCACAGAGTGTTTCAAGC
TTCCATTCTTCCTTCTCAACATTGACATAAAACTGCTTGATACCCTCAAG
GGTGAGTTC
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