CN189434

Overview
NameCN189434
Unique NameCN189434
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: RH52B_ORYSJ (DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa subsp. japonica GN=PL10B PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19
Identity = 43/125 (34.40%), Postives = 76/125 (60.80%), Query Frame = -1
Query:  230 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 604
            +++FV T+R  D L + + +     ++ HGD  Q  R+  +R F+SG++ +L+ TD+ ARG+D+  V+ VIN+DLP   ++Y+HRIGR+GR G+ G+A  F    +  +   + +      +E+P
Sbjct:  431 TLVFVETKRGADALENWLYNNGFPATSIHGDRTQQEREYALRSFKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNESNTPLARPLSELMQEANQEVP 555          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: RH47B_ORYSJ (DEAD-box ATP-dependent RNA helicase 47B OS=Oryza sativa subsp. japonica GN=Os03g0219700 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19
Identity = 50/142 (35.21%), Postives = 79/142 (55.63%), Query Frame = -1
Query:  260 QFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 685
            + Y  + K + K++TL      L     + F+N  + +  +  K+ +R    +  HGD+ +  R  ++++F+ G  RVL+T +L ARG+DV +  LVIN DLPT   +Y HR GR+GR GRKG     VT  +E   F ++K
Sbjct:  407 EHYYCISKAQHKVDTLRRCIHALEAQTVIAFMNNTKPLKDVVFKLEARGMKATELHGDLGKLARSTVLKKFKDGEFRVLVTNELSARGLDVPECDLVINLDLPTDSTHYAHRAGRTGRLGRKGTV---VTICEETETFVVRK 545          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: RH21_ORYSJ (DEAD-box ATP-dependent RNA helicase 21 OS=Oryza sativa subsp. japonica GN=Os03g0708600 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19
Identity = 47/139 (33.81%), Postives = 79/139 (56.83%), Query Frame = -1
Query:  260 VNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 676
            V + KE  K+  L  +   L    +++F NT++  D     +      V+  HG   Q  R+  +  FR+    VL+ TD+  RGID+  V+ VINY++P+  + Y HRIGR+GR G+KG+A +F+T ++  + FD+++
Sbjct:  557 VIMTKESEKMSRLQKILTDLGDKPAIVFCNTKKSADARAKDLDKAGFRVTTLHGGKSQEQRETSLDGFRNRRFTVLVATDVAGRGIDIPDVAHVINYEMPSSIDTYTHRIGRTGRAGKKGLATSFLTLENTDIFFDLKQ 695          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DED1_USTMA (ATP-dependent RNA helicase DED1 OS=Ustilago maydis GN=DED1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19
Identity = 53/158 (33.54%), Postives = 88/158 (55.70%), Query Frame = -1
Query:  230 TLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 703
            T E I Q    VE ++ +   L  L    +   ++IFV T+R  D L+D +       ++ HGD  Q  R+  +  FRSG + +++ T + ARG+D+  V+ V+NYDLP+  ++Y+HRIGR+GR G  G A  F  R ++ ++ D+ +      +E+P
Sbjct:  420 TSENITQKIEYVEDDDKRSVLLDVLASMPSGGLTLIFVETKRMADMLSDFLLRSKIGATSIHGDRTQRERERALELFRSGKTPIMVATAVAARGLDIPNVTHVVNYDLPSDVDDYVHRIGRTGRAGNVGHATAFFNRGNKNIVRDLIELLKEANQEVP 577          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DDX4_BOVIN (Probable ATP-dependent RNA helicase DDX4 OS=Bos taurus GN=DDX4 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19
Identity = 44/126 (34.92%), Postives = 76/126 (60.32%), Query Frame = -1
Query:  275 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERML 652
            K E L ++   +   ++++FV T++K D++   +     + ++ HGD +Q  R+  + +FR G   VL+ T + ARG+D++ V  VIN+DLP+  + Y+HRIGR+GR G  G AI+F   + +  L
Sbjct:  529 KREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDSQL 654          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DBP8_ASPNC (ATP-dependent RNA helicase dbp8 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp8 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19
Identity = 44/130 (33.85%), Postives = 79/130 (60.77%), Query Frame = -1
Query:  236 ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE 625
            E  A   ++IF N  +  D L   +R   H V++ H  + Q+ R+  +  FR+ ++R+L+ TD+ +RG+D+  V LV+N+D+P  P++Y+HR+GR+ R GRKG ++  V + D  ++  I++     +EE
Sbjct:  343 EANASKPAIIFCNHTKTADLLERMLRRLSHRVTSLHSLLPQSERNANLARFRASAARLLVATDVASRGLDIPSVELVVNFDVPRNPDDYVHRVGRTARAGRKGESVTLVGQRDVSLVLAIEERVGRQMEE 472          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: RHLB_SHESW (ATP-dependent RNA helicase rhlB OS=Shewanella sp. (strain W3-18-1) GN=rhlB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.877e-19
Identity = 56/153 (36.60%), Postives = 83/153 (54.25%), Query Frame = -1
Query:  251 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 709
            E T + IK+  V    +E K+  L  L E     ++++F NT+   + L   +    H V    GD+ Q  R  I+ +F SG   +L+ TD+ ARG+ +  VS V NYDLP   E+Y+HRIGR+GR G KGV+I+F   +    L  I+ + N
Sbjct:  225 EKTSKNIKE-EVFYPSQEDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSISFACEEYALNLPAIESYIN 376          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: RHLB_SHEPC (ATP-dependent RNA helicase rhlB OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=rhlB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.877e-19
Identity = 56/153 (36.60%), Postives = 83/153 (54.25%), Query Frame = -1
Query:  251 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 709
            E T + IK+  V    +E K+  L  L E     ++++F NT+   + L   +    H V    GD+ Q  R  I+ +F SG   +L+ TD+ ARG+ +  VS V NYDLP   E+Y+HRIGR+GR G KGV+I+F   +    L  I+ + N
Sbjct:  225 EKTSKNIKE-EVFYPSQEDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSISFACEEYALNLPAIESYIN 376          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: RH53_ARATH (DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana GN=RH53 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.877e-19
Identity = 48/125 (38.40%), Postives = 74/125 (59.20%), Query Frame = -1
Query:  227 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPS 601
            ++F  T+R  D L+  + +R     A HGD+ Q+ R+  +  FR G   +L+ TD+ ARG+DV  V L+I+Y+LP   E ++HR GR+GR G+KG AI   ++D  R +  I++       ELPS
Sbjct:  353 IVFTQTKRDADRLSYAL-ARSFKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIEREVGSRFTELPS 476          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DDX52_HUMAN (Probable ATP-dependent RNA helicase DDX52 OS=Homo sapiens GN=DDX52 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.877e-19
Identity = 56/142 (39.44%), Postives = 78/142 (54.93%), Query Frame = -1
Query:  275 LEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERML 700
            +E ++Q  + V  E  KL  + +L +       ++FV +  +   L  ++      V   H +  Q  RD  +  FR+G   VLI T LLARGID + V+LVINYD PT    Y+HRIGR+GR G KG AI F T DD+ +L
Sbjct:  383 VETVEQELLFVGSETGKLLAVRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTEDDKPLL 524          
The following BLAST results are available for this feature:
BLAST of CN189434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH52B_ORYSJ2.969e-1934.40DEAD-box ATP-dependent RNA helicase 52B OS=Oryza s... [more]
RH47B_ORYSJ2.969e-1935.21DEAD-box ATP-dependent RNA helicase 47B OS=Oryza s... [more]
RH21_ORYSJ2.969e-1933.81DEAD-box ATP-dependent RNA helicase 21 OS=Oryza sa... [more]
DED1_USTMA2.969e-1933.54ATP-dependent RNA helicase DED1 OS=Ustilago maydis... [more]
DDX4_BOVIN2.969e-1934.92Probable ATP-dependent RNA helicase DDX4 OS=Bos ta... [more]
DBP8_ASPNC2.969e-1933.85ATP-dependent RNA helicase dbp8 OS=Aspergillus nig... [more]
RHLB_SHESW3.877e-1936.60ATP-dependent RNA helicase rhlB OS=Shewanella sp. ... [more]
RHLB_SHEPC3.877e-1936.60ATP-dependent RNA helicase rhlB OS=Shewanella putr... [more]
RH53_ARATH3.877e-1938.40DEAD-box ATP-dependent RNA helicase 53 OS=Arabidop... [more]
DDX52_HUMAN3.877e-1939.44Probable ATP-dependent RNA helicase DDX52 OS=Homo ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001N15_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189434 ID=CN189434; Name=CN189434; organism=Citrus sinensis; type=EST; length=709bp
CCCTTTTTTTTTCAATGTGCATGACCCATATGATTAAATGGTCGGATATG
TTTGAGAACAACATTAATTTAAGACACTAGACGGAAAGGAAGAAGAAACC
AAAAAAAAAAAAAAAAGGGGAGAAAATATCCACCACATTAAATAGTACTT
GCAAAATCAGGAAACCCCTTCTTGCCTCGACAAACTTACAAAAAACAGAA
CCTCCTCAAAGAAGGTCAGCAACATTTGAAGGCAGCTCCTCAATGACCAC
GTTATAGAACTTTTGAATATCAAAAAGCATTCTCTCATCATCCCTTGTCA
CAAAATTAATGGCAACACCCTTTCTTCCAAATCGACCACTTCGTCCAATA
CGGTGAAGGTAGTTTTCTGGTTGAGTCGGCAGATCATAATTTATGACAAG
TGAAACTTGCTGCACATCAATACCACGAGCCAACAGATCAGTGGTGATGA
GAACACGAGAAGAACCAGAGCGAAATTCACGCATAATGATATCTCGGGTG
TTCTGATCCATGTCCCCATGAGTGGCAGAGACTGTATGGTCACGGCTTCG
CATCTTGTCAGTAAGCCAGTCGACCTTTCGCCGAGTGTTCACAAAGATGA
CACTCTGGGTTATGGCCAGAGTCTCATAAAGATCACAGAGTGTTTCAAGC
TTCCATTCTTCCTTCTCAACATTGACATAAAACTGCTTGATACCCTCAAG
GGTGAGTTC
back to top