CN189434
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: RH52B_ORYSJ (DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa subsp. japonica GN=PL10B PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19 Identity = 43/125 (34.40%), Postives = 76/125 (60.80%), Query Frame = -1 Query: 230 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 604 +++FV T+R D L + + + ++ HGD Q R+ +R F+SG++ +L+ TD+ ARG+D+ V+ VIN+DLP ++Y+HRIGR+GR G+ G+A F + + + + +E+P Sbjct: 431 TLVFVETKRGADALENWLYNNGFPATSIHGDRTQQEREYALRSFKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNESNTPLARPLSELMQEANQEVP 555
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: RH47B_ORYSJ (DEAD-box ATP-dependent RNA helicase 47B OS=Oryza sativa subsp. japonica GN=Os03g0219700 PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19 Identity = 50/142 (35.21%), Postives = 79/142 (55.63%), Query Frame = -1 Query: 260 QFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 685 + Y + K + K++TL L + F+N + + + K+ +R + HGD+ + R ++++F+ G RVL+T +L ARG+DV + LVIN DLPT +Y HR GR+GR GRKG VT +E F ++K Sbjct: 407 EHYYCISKAQHKVDTLRRCIHALEAQTVIAFMNNTKPLKDVVFKLEARGMKATELHGDLGKLARSTVLKKFKDGEFRVLVTNELSARGLDVPECDLVINLDLPTDSTHYAHRAGRTGRLGRKGTV---VTICEETETFVVRK 545
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: RH21_ORYSJ (DEAD-box ATP-dependent RNA helicase 21 OS=Oryza sativa subsp. japonica GN=Os03g0708600 PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19 Identity = 47/139 (33.81%), Postives = 79/139 (56.83%), Query Frame = -1 Query: 260 VNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 676 V + KE K+ L + L +++F NT++ D + V+ HG Q R+ + FR+ VL+ TD+ RGID+ V+ VINY++P+ + Y HRIGR+GR G+KG+A +F+T ++ + FD+++ Sbjct: 557 VIMTKESEKMSRLQKILTDLGDKPAIVFCNTKKSADARAKDLDKAGFRVTTLHGGKSQEQRETSLDGFRNRRFTVLVATDVAGRGIDIPDVAHVINYEMPSSIDTYTHRIGRTGRAGKKGLATSFLTLENTDIFFDLKQ 695
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DED1_USTMA (ATP-dependent RNA helicase DED1 OS=Ustilago maydis GN=DED1 PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19 Identity = 53/158 (33.54%), Postives = 88/158 (55.70%), Query Frame = -1 Query: 230 TLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 703 T E I Q VE ++ + L L + ++IFV T+R D L+D + ++ HGD Q R+ + FRSG + +++ T + ARG+D+ V+ V+NYDLP+ ++Y+HRIGR+GR G G A F R ++ ++ D+ + +E+P Sbjct: 420 TSENITQKIEYVEDDDKRSVLLDVLASMPSGGLTLIFVETKRMADMLSDFLLRSKIGATSIHGDRTQRERERALELFRSGKTPIMVATAVAARGLDIPNVTHVVNYDLPSDVDDYVHRIGRTGRAGNVGHATAFFNRGNKNIVRDLIELLKEANQEVP 577
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DDX4_BOVIN (Probable ATP-dependent RNA helicase DDX4 OS=Bos taurus GN=DDX4 PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19 Identity = 44/126 (34.92%), Postives = 76/126 (60.32%), Query Frame = -1 Query: 275 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERML 652 K E L ++ + ++++FV T++K D++ + + ++ HGD +Q R+ + +FR G VL+ T + ARG+D++ V VIN+DLP+ + Y+HRIGR+GR G G AI+F + + L Sbjct: 529 KREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDSQL 654
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DBP8_ASPNC (ATP-dependent RNA helicase dbp8 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp8 PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19 Identity = 44/130 (33.85%), Postives = 79/130 (60.77%), Query Frame = -1 Query: 236 ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE 625 E A ++IF N + D L +R H V++ H + Q+ R+ + FR+ ++R+L+ TD+ +RG+D+ V LV+N+D+P P++Y+HR+GR+ R GRKG ++ V + D ++ I++ +EE Sbjct: 343 EANASKPAIIFCNHTKTADLLERMLRRLSHRVTSLHSLLPQSERNANLARFRASAARLLVATDVASRGLDIPSVELVVNFDVPRNPDDYVHRVGRTARAGRKGESVTLVGQRDVSLVLAIEERVGRQMEE 472
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: RHLB_SHESW (ATP-dependent RNA helicase rhlB OS=Shewanella sp. (strain W3-18-1) GN=rhlB PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.877e-19 Identity = 56/153 (36.60%), Postives = 83/153 (54.25%), Query Frame = -1 Query: 251 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 709 E T + IK+ V +E K+ L L E ++++F NT+ + L + H V GD+ Q R I+ +F SG +L+ TD+ ARG+ + VS V NYDLP E+Y+HRIGR+GR G KGV+I+F + L I+ + N Sbjct: 225 EKTSKNIKE-EVFYPSQEDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSISFACEEYALNLPAIESYIN 376
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: RHLB_SHEPC (ATP-dependent RNA helicase rhlB OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=rhlB PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.877e-19 Identity = 56/153 (36.60%), Postives = 83/153 (54.25%), Query Frame = -1 Query: 251 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 709 E T + IK+ V +E K+ L L E ++++F NT+ + L + H V GD+ Q R I+ +F SG +L+ TD+ ARG+ + VS V NYDLP E+Y+HRIGR+GR G KGV+I+F + L I+ + N Sbjct: 225 EKTSKNIKE-EVFYPSQEDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSISFACEEYALNLPAIESYIN 376
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: RH53_ARATH (DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana GN=RH53 PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.877e-19 Identity = 48/125 (38.40%), Postives = 74/125 (59.20%), Query Frame = -1 Query: 227 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPS 601 ++F T+R D L+ + +R A HGD+ Q+ R+ + FR G +L+ TD+ ARG+DV V L+I+Y+LP E ++HR GR+GR G+KG AI ++D R + I++ ELPS Sbjct: 353 IVFTQTKRDADRLSYAL-ARSFKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIEREVGSRFTELPS 476
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DDX52_HUMAN (Probable ATP-dependent RNA helicase DDX52 OS=Homo sapiens GN=DDX52 PE=1 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 3.877e-19 Identity = 56/142 (39.44%), Postives = 78/142 (54.93%), Query Frame = -1 Query: 275 LEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERML 700 +E ++Q + V E KL + +L + ++FV + + L ++ V H + Q RD + FR+G VLI T LLARGID + V+LVINYD PT Y+HRIGR+GR G KG AI F T DD+ +L Sbjct: 383 VETVEQELLFVGSETGKLLAVRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTEDDKPLL 524 The following BLAST results are available for this feature:
BLAST of CN189434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN189434 ID=CN189434; Name=CN189434; organism=Citrus sinensis; type=EST; length=709bpback to top |