CN189434

Overview
NameCN189434
Unique NameCN189434
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DDX4_MACFA (Probable ATP-dependent RNA helicase DDX4 OS=Macaca fascicularis GN=DDX4 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.877e-19
Identity = 44/126 (34.92%), Postives = 76/126 (60.32%), Query Frame = -1
Query:  275 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERML 652
            K E L ++   +   ++++FV T++K D++   +     + ++ HGD +Q  R+  + +FR G   VL+ T + ARG+D++ V  VIN+DLP+  + Y+HRIGR+GR G  G AI+F   + +  L
Sbjct:  528 KREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHL 653          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DBP8_DEBHA (ATP-dependent RNA helicase DBP8 OS=Debaryomyces hansenii GN=DBP8 PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.877e-19
Identity = 45/130 (34.62%), Postives = 78/130 (60.00%), Query Frame = -1
Query:  224 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNV---VIEELPSN 604
            S+IF N     + L   +R  +  V++ H +M Q  R   +  F++G++++LI TD+ +RG+D+  V LV+NYD+P   ++++HR+GR+ R GRKG AI+ V   D   +  I++  N    +IE++  N
Sbjct:  256 SIIFTNRTATAELLRRTLRKLEFRVASLHSEMPQTERTNSLHRFKAGAAKILIATDVASRGLDIPTVELVVNYDIPADADDFIHRVGRTARAGRKGDAISIVAEKDVDRILAIEERINKKMDLIEDISDN 385          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: RH36_ORYSJ (DEAD-box ATP-dependent RNA helicase 36 OS=Oryza sativa subsp. japonica GN=Os07g0633500 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.064e-19
Identity = 52/150 (34.67%), Postives = 86/150 (57.33%), Query Frame = -1
Query:  263 TLEGIKQFYVNV--EKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFV-TRDDERMLFDIQ 703
            T++ +KQ Y++V  + +E  L  L        I   ++FV+T R   +L   +    H   + H    Q+ R   +  F+S    VL+ TD+ +RG+D+Q V LVINYD+P  P +Y+HR+GR+ R  R G++I+F+ T+ D R+L +I+
Sbjct:  289 TVDTLKQLYIHVPPDAKELYLFYLLSKMNEDNIRSVIVFVSTCRTCQYLDFLLEELGHPAVSLHSHKPQSRRLAALHNFKSSKVPVLLATDVASRGLDIQTVDLVINYDVPRYPRDYIHRVGRTARATRGGLSISFITTQRDIRLLHEIE 438          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DDX4_PIG (Probable ATP-dependent RNA helicase DDX4 OS=Sus scrofa GN=DDX4 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.064e-19
Identity = 44/126 (34.92%), Postives = 76/126 (60.32%), Query Frame = -1
Query:  275 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERML 652
            K E L ++   +   ++++FV T++K D++   +     + ++ HGD +Q  R+  + +FR G   VL+ T + ARG+D++ V  VIN+DLP+  + Y+HRIGR+GR G  G AI+F   + +  L
Sbjct:  525 KREKLLEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHL 650          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DDX4_HUMAN (Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens GN=DDX4 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.064e-19
Identity = 44/126 (34.92%), Postives = 76/126 (60.32%), Query Frame = -1
Query:  275 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERML 652
            K E L ++   +   ++++FV T++K D++   +     + ++ HGD +Q  R+  + +FR G   VL+ T + ARG+D++ V  VIN+DLP+  + Y+HRIGR+GR G  G AI+F   + +  L
Sbjct:  527 KREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHL 652          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DDX46_DICDI (ATP-dependent RNA helicase ddx46 OS=Dictyostelium discoideum GN=helB1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.064e-19
Identity = 56/162 (34.57%), Postives = 88/162 (54.32%), Query Frame = -1
Query:  209 IKQFYVNVEKEEWKLETLCDLYETLAIT-QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 691
            I+QF V V   E +   L +L        Q +IF N +   D L  ++ +  +   + HG  DQ  RD  + +F++    +LI T L +RG+D++ ++LV+N+D P   E+Y+HR+GR+GR G +G A  F+T D+ER    I K     +E+  S V D L
Sbjct:  730 IEQF-VEVRPTETRFRRLIELLSIWYHKGQILIFTNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETISDFKNKVKTILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTFITPDEERFSSSIIK----ALEQSGSKVPDEL 886          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DDX42_CHICK (ATP-dependent RNA helicase DDX42 OS=Gallus gallus GN=DDX42 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.064e-19
Identity = 43/130 (33.08%), Postives = 72/130 (55.38%), Query Frame = -1
Query:  212 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 601
            ++FV  +   + L + ++  DH +   HGDMDQ+ R+ ++ EF+     +L+ TD+ ARG+D+  +  VINYD+    + + HRIGR+GR G KGVA   +T  D     D+ +      + +   + DL
Sbjct:  502 LLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDL 631          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DBP8_COCIM (ATP-dependent RNA helicase DBP8 OS=Coccidioides immitis GN=DBP8 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.064e-19
Identity = 42/115 (36.52%), Postives = 74/115 (64.35%), Query Frame = -1
Query:  260 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 604
            ++IF N  +  D L   +R   H V++ H  + Q+ R   +  FR+ ++R+L+ TD+ ARG+D+  V LV+N+D+P  P++Y+HR+GR+ R GR+G AI  V + D +++  I++
Sbjct:  364 AIIFCNRTKTADLLDRLLRRLGHRVTSLHSLLPQSERTSNLARFRASAARLLVATDVAARGLDIPSVGLVVNFDVPRNPDDYIHRVGRTARAGREGEAITLVGQRDVQLVLAIEE 478          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DBP10_CRYNE (ATP-dependent RNA helicase DBP10 OS=Cryptococcus neoformans GN=DBP10 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.064e-19
Identity = 44/117 (37.61%), Postives = 71/117 (60.68%), Query Frame = -1
Query:  257 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 607
            Q+++FV T+  VD++ + +R+  +  S  +  +DQ  R   +  FRS  S VL+ TD+ ARG+D+  +  VINYD P  P  ++HR+GR+ R GRKG A + + ++D   L D+  F
Sbjct:  307 QAIVFVATKHHVDYVAELLRTTGYRTSLIYSSLDQVARQQQLAGFRSHQSDVLVVTDVAARGLDIPIMDHVINYDFPAGPRIFVHRVGRTARAGRKGTAYSLIVKEDFPYLCDLHTF 423          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: RH47_ARATH (DEAD-box ATP-dependent RNA helicase 47 OS=Arabidopsis thaliana GN=RH47 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.614e-19
Identity = 49/144 (34.03%), Postives = 84/144 (58.33%), Query Frame = -1
Query:  260 IKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 691
            +K +Y  + K + K++TL      L     + F+N  R++  +  K+ +R    +  HGD+ +  R  ++++F++G  +VL+T +L ARG+DV +  LV+N +LPT   +Y HR GR+GR GRKG     VT  +E  +F ++K
Sbjct:  382 LKHYYC-ISKHQHKVDTLRRCVHALDAQSVIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNELSARGLDVAECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTV---VTVCEESQVFIVKK 521          
The following BLAST results are available for this feature:
BLAST of CN189434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DDX4_MACFA3.877e-1934.92Probable ATP-dependent RNA helicase DDX4 OS=Macaca... [more]
DBP8_DEBHA3.877e-1934.62ATP-dependent RNA helicase DBP8 OS=Debaryomyces ha... [more]
RH36_ORYSJ5.064e-1934.67DEAD-box ATP-dependent RNA helicase 36 OS=Oryza sa... [more]
DDX4_PIG5.064e-1934.92Probable ATP-dependent RNA helicase DDX4 OS=Sus sc... [more]
DDX4_HUMAN5.064e-1934.92Probable ATP-dependent RNA helicase DDX4 OS=Homo s... [more]
DDX46_DICDI5.064e-1934.57ATP-dependent RNA helicase ddx46 OS=Dictyostelium ... [more]
DDX42_CHICK5.064e-1933.08ATP-dependent RNA helicase DDX42 OS=Gallus gallus ... [more]
DBP8_COCIM5.064e-1936.52ATP-dependent RNA helicase DBP8 OS=Coccidioides im... [more]
DBP10_CRYNE5.064e-1937.61ATP-dependent RNA helicase DBP10 OS=Cryptococcus n... [more]
RH47_ARATH6.614e-1934.03DEAD-box ATP-dependent RNA helicase 47 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N15_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189434 ID=CN189434; Name=CN189434; organism=Citrus sinensis; type=EST; length=709bp
CCCTTTTTTTTTCAATGTGCATGACCCATATGATTAAATGGTCGGATATG
TTTGAGAACAACATTAATTTAAGACACTAGACGGAAAGGAAGAAGAAACC
AAAAAAAAAAAAAAAAGGGGAGAAAATATCCACCACATTAAATAGTACTT
GCAAAATCAGGAAACCCCTTCTTGCCTCGACAAACTTACAAAAAACAGAA
CCTCCTCAAAGAAGGTCAGCAACATTTGAAGGCAGCTCCTCAATGACCAC
GTTATAGAACTTTTGAATATCAAAAAGCATTCTCTCATCATCCCTTGTCA
CAAAATTAATGGCAACACCCTTTCTTCCAAATCGACCACTTCGTCCAATA
CGGTGAAGGTAGTTTTCTGGTTGAGTCGGCAGATCATAATTTATGACAAG
TGAAACTTGCTGCACATCAATACCACGAGCCAACAGATCAGTGGTGATGA
GAACACGAGAAGAACCAGAGCGAAATTCACGCATAATGATATCTCGGGTG
TTCTGATCCATGTCCCCATGAGTGGCAGAGACTGTATGGTCACGGCTTCG
CATCTTGTCAGTAAGCCAGTCGACCTTTCGCCGAGTGTTCACAAAGATGA
CACTCTGGGTTATGGCCAGAGTCTCATAAAGATCACAGAGTGTTTCAAGC
TTCCATTCTTCCTTCTCAACATTGACATAAAACTGCTTGATACCCTCAAG
GGTGAGTTC
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