CN189434
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DDX4_MACFA (Probable ATP-dependent RNA helicase DDX4 OS=Macaca fascicularis GN=DDX4 PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.877e-19 Identity = 44/126 (34.92%), Postives = 76/126 (60.32%), Query Frame = -1 Query: 275 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERML 652 K E L ++ + ++++FV T++K D++ + + ++ HGD +Q R+ + +FR G VL+ T + ARG+D++ V VIN+DLP+ + Y+HRIGR+GR G G AI+F + + L Sbjct: 528 KREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHL 653
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DBP8_DEBHA (ATP-dependent RNA helicase DBP8 OS=Debaryomyces hansenii GN=DBP8 PE=3 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 3.877e-19 Identity = 45/130 (34.62%), Postives = 78/130 (60.00%), Query Frame = -1 Query: 224 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNV---VIEELPSN 604 S+IF N + L +R + V++ H +M Q R + F++G++++LI TD+ +RG+D+ V LV+NYD+P ++++HR+GR+ R GRKG AI+ V D + I++ N +IE++ N Sbjct: 256 SIIFTNRTATAELLRRTLRKLEFRVASLHSEMPQTERTNSLHRFKAGAAKILIATDVASRGLDIPTVELVVNYDIPADADDFIHRVGRTARAGRKGDAISIVAEKDVDRILAIEERINKKMDLIEDISDN 385
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: RH36_ORYSJ (DEAD-box ATP-dependent RNA helicase 36 OS=Oryza sativa subsp. japonica GN=Os07g0633500 PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.064e-19 Identity = 52/150 (34.67%), Postives = 86/150 (57.33%), Query Frame = -1 Query: 263 TLEGIKQFYVNV--EKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFV-TRDDERMLFDIQ 703 T++ +KQ Y++V + +E L L I ++FV+T R +L + H + H Q+ R + F+S VL+ TD+ +RG+D+Q V LVINYD+P P +Y+HR+GR+ R R G++I+F+ T+ D R+L +I+ Sbjct: 289 TVDTLKQLYIHVPPDAKELYLFYLLSKMNEDNIRSVIVFVSTCRTCQYLDFLLEELGHPAVSLHSHKPQSRRLAALHNFKSSKVPVLLATDVASRGLDIQTVDLVINYDVPRYPRDYIHRVGRTARATRGGLSISFITTQRDIRLLHEIE 438
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DDX4_PIG (Probable ATP-dependent RNA helicase DDX4 OS=Sus scrofa GN=DDX4 PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.064e-19 Identity = 44/126 (34.92%), Postives = 76/126 (60.32%), Query Frame = -1 Query: 275 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERML 652 K E L ++ + ++++FV T++K D++ + + ++ HGD +Q R+ + +FR G VL+ T + ARG+D++ V VIN+DLP+ + Y+HRIGR+GR G G AI+F + + L Sbjct: 525 KREKLLEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHL 650
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DDX4_HUMAN (Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens GN=DDX4 PE=2 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 5.064e-19 Identity = 44/126 (34.92%), Postives = 76/126 (60.32%), Query Frame = -1 Query: 275 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERML 652 K E L ++ + ++++FV T++K D++ + + ++ HGD +Q R+ + +FR G VL+ T + ARG+D++ V VIN+DLP+ + Y+HRIGR+GR G G AI+F + + L Sbjct: 527 KREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHL 652
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DDX46_DICDI (ATP-dependent RNA helicase ddx46 OS=Dictyostelium discoideum GN=helB1 PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.064e-19 Identity = 56/162 (34.57%), Postives = 88/162 (54.32%), Query Frame = -1 Query: 209 IKQFYVNVEKEEWKLETLCDLYETLAIT-QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 691 I+QF V V E + L +L Q +IF N + D L ++ + + + HG DQ RD + +F++ +LI T L +RG+D++ ++LV+N+D P E+Y+HR+GR+GR G +G A F+T D+ER I K +E+ S V D L Sbjct: 730 IEQF-VEVRPTETRFRRLIELLSIWYHKGQILIFTNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETISDFKNKVKTILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTFITPDEERFSSSIIK----ALEQSGSKVPDEL 886
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DDX42_CHICK (ATP-dependent RNA helicase DDX42 OS=Gallus gallus GN=DDX42 PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.064e-19 Identity = 43/130 (33.08%), Postives = 72/130 (55.38%), Query Frame = -1 Query: 212 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 601 ++FV + + L + ++ DH + HGDMDQ+ R+ ++ EF+ +L+ TD+ ARG+D+ + VINYD+ + + HRIGR+GR G KGVA +T D D+ + + + + DL Sbjct: 502 LLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDL 631
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DBP8_COCIM (ATP-dependent RNA helicase DBP8 OS=Coccidioides immitis GN=DBP8 PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.064e-19 Identity = 42/115 (36.52%), Postives = 74/115 (64.35%), Query Frame = -1 Query: 260 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 604 ++IF N + D L +R H V++ H + Q+ R + FR+ ++R+L+ TD+ ARG+D+ V LV+N+D+P P++Y+HR+GR+ R GR+G AI V + D +++ I++ Sbjct: 364 AIIFCNRTKTADLLDRLLRRLGHRVTSLHSLLPQSERTSNLARFRASAARLLVATDVAARGLDIPSVGLVVNFDVPRNPDDYIHRVGRTARAGREGEAITLVGQRDVQLVLAIEE 478
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: DBP10_CRYNE (ATP-dependent RNA helicase DBP10 OS=Cryptococcus neoformans GN=DBP10 PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.064e-19 Identity = 44/117 (37.61%), Postives = 71/117 (60.68%), Query Frame = -1 Query: 257 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 607 Q+++FV T+ VD++ + +R+ + S + +DQ R + FRS S VL+ TD+ ARG+D+ + VINYD P P ++HR+GR+ R GRKG A + + ++D L D+ F Sbjct: 307 QAIVFVATKHHVDYVAELLRTTGYRTSLIYSSLDQVARQQQLAGFRSHQSDVLVVTDVAARGLDIPIMDHVINYDFPAGPRIFVHRVGRTARAGRKGTAYSLIVKEDFPYLCDLHTF 423
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: RH47_ARATH (DEAD-box ATP-dependent RNA helicase 47 OS=Arabidopsis thaliana GN=RH47 PE=2 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 6.614e-19 Identity = 49/144 (34.03%), Postives = 84/144 (58.33%), Query Frame = -1 Query: 260 IKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 691 +K +Y + K + K++TL L + F+N R++ + K+ +R + HGD+ + R ++++F++G +VL+T +L ARG+DV + LV+N +LPT +Y HR GR+GR GRKG VT +E +F ++K Sbjct: 382 LKHYYC-ISKHQHKVDTLRRCVHALDAQSVIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNELSARGLDVAECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTV---VTVCEESQVFIVKK 521 The following BLAST results are available for this feature:
BLAST of CN189434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN189434 ID=CN189434; Name=CN189434; organism=Citrus sinensis; type=EST; length=709bpback to top |