CN189434

Overview
NameCN189434
Unique NameCN189434
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: IF4A3_BOVIN (Eukaryotic initiation factor 4A-III OS=Bos taurus GN=EIF4A3 PE=2 SV=3)

HSP 1 Score: 243.047 bits (619), Expect = 1.151e-63
Identity = 116/167 (69.46%), Postives = 142/167 (85.03%), Query Frame = -1
Query:  209 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 709
            ELTLEGIKQF+V VE+EEWK +TLCDLY+TL ITQ+VIF NT+RKVDWLT+KMR  + TVS+ HGDM Q  R+ IM+EFRSG+SRVLI+TD+ ARG+DV QVSL+INYDLP   E Y+HRIGRSGR+GRKGVAINFV  DD R+L DI+++Y+  I+E+P NVADL+
Sbjct:  245 ELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 411          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: I4A3B_XENLA (Eukaryotic initiation factor 4A-III-B OS=Xenopus laevis GN=eif4a3-B PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.151e-63
Identity = 116/167 (69.46%), Postives = 142/167 (85.03%), Query Frame = -1
Query:  209 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 709
            ELTLEGIKQF+V VE+EEWK +TLCDLY+TL ITQ+VIF NT+RKVDWLT+KMR  + TVS+ HGDM Q  R+ IM+EFRSG+SRVLI+TD+ ARG+DV QVSL+INYDLP   E Y+HRIGRSGR+GRKGVAINFV  DD R+L DI+++Y+  I+E+P NVADL+
Sbjct:  248 ELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 414          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: FAL1_AJECN (ATP-dependent RNA helicase FAL1 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.565e-63
Identity = 115/162 (70.99%), Postives = 139/162 (85.80%), Query Frame = -1
Query:  224 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSN 709
            ELTLEG+KQ+++ VEKEEWK +TLCDLY+TL ITQ+VIF NTRRKVDWLTDKMR  + TVS+ HG+M Q  RD IM++FR G+SRVLI+TD+ ARGIDVQQVSLVINYDLP+  ENY+HRIGRSGRFGRKGVAINFVT +D R+L DI+ +Y+  I+E+P N
Sbjct:  232 ELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIELYYSTQIDEMPMN 393          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: I4A3A_XENLA (Eukaryotic initiation factor 4A-III-A OS=Xenopus laevis GN=eif4a3-A PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.462e-63
Identity = 115/167 (68.86%), Postives = 141/167 (84.43%), Query Frame = -1
Query:  209 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 709
            ELTLEGIKQF+V VE+EEWK +TLCDLY+TL ITQ+VIF NT+RKVDWLT+KMR  + TVS+ HGDM Q  R+ IM+EFRSG+SRVLI+TD+ ARG+DV QVSL+INYDLP   E Y+HRIGRSGR+G KGVAINFV  DD R+L DI+++Y+  I+E+P NVADL+
Sbjct:  249 ELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGGKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 415          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: FAL1_USTMA (ATP-dependent RNA helicase FAL1 OS=Ustilago maydis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 9.746e-63
Identity = 116/167 (69.46%), Postives = 137/167 (82.04%), Query Frame = -1
Query:  209 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 709
            ELTLEGIKQF+V VEKEEWK +TLCDLY+TL ITQ+VIF NTRRKVDWL+ KM+  +  VS+ HG+M Q  RD +M EFR GSSRVLITTD+ ARGID+  +SLVINYDLPT  ENY+HRIGRSGRFGRKGVAINFVT DD R L DI++FY+  I+E+P  + D+L
Sbjct:  231 ELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLSAKMKENNFQVSSMHGEMQQKERDEVMAEFRQGSSRVLITTDVWARGIDIANISLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTVDDVRTLRDIEQFYSTQIDEMPVKLEDML 397          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: IF4A_AJECN (ATP-dependent RNA helicase eIF4A OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.703e-62
Identity = 116/141 (82.27%), Postives = 126/141 (89.36%), Query Frame = -1
Query:  287 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 709
            ELTLEGIKQFY+ VEKEEWKL+TL DLYET+ ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDM+Q  RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD
Sbjct:  232 ELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQQQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADD 372          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: IF4A_YARLI (ATP-dependent RNA helicase eIF4A OS=Yarrowia lipolytica GN=TIF1 PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 8.250e-62
Identity = 111/167 (66.47%), Postives = 142/167 (85.03%), Query Frame = -1
Query:  209 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 709
            ELTLEGIKQFY++VE+E +K E LCDLYET+ ++Q+VIF NTRRKVD+LT  +   D TVS+ HG+ +Q+ RD+IM+ FR+GSSR+LITTDLLARGIDVQQVSLVIN+DLP+  ENY+HRIGR GRFGRKGVAINFVT +D  ML ++++FY+  I E+P+N+ADL+
Sbjct:  229 ELTLEGIKQFYIDVEQESYKFEVLCDLYETINVSQAVIFCNTRRKVDYLTQALTEADFTVSSMHGETEQSQRDVIMKAFRTGSSRILITTDLLARGIDVQQVSLVINFDLPSNRENYIHRIGRGGRFGRKGVAINFVTSEDHGMLKELERFYSTEIVEMPTNIADLI 395          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: FAL1_YARLI (ATP-dependent RNA helicase FAL1 OS=Yarrowia lipolytica GN=FAL1 PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.078e-61
Identity = 112/167 (67.07%), Postives = 137/167 (82.04%), Query Frame = -1
Query:  209 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 709
            ELTLEG+KQ+++ VE+EEWK +TLCDLY+TL ITQ+VIF NT++KVDWLT +M+  + TV + HGDM Q  RD IM EFRSG SRVLI+TD+ ARGIDVQQVSLVINYDLP   ENY+HRIGRSGRFGRKGVAINF T DD   L DI+++Y+  I+E+P NV D++
Sbjct:  231 ELTLEGLKQYFIAVEQEEWKFDTLCDLYDTLTITQAVIFCNTKKKVDWLTQQMKDNNFTVCSMHGDMAQKDRDSIMNEFRSGRSRVLISTDVWARGIDVQQVSLVINYDLPPNRENYIHRIGRSGRFGRKGVAINFATNDDITTLRDIEQYYSTQIDEMPVNVTDMM 397          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: IF4A_PICGU (ATP-dependent RNA helicase eIF4A OS=Pichia guilliermondii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.401e-61
Identity = 111/166 (66.87%), Postives = 141/166 (84.94%), Query Frame = -1
Query:  212 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 709
            ELTLEGIKQFY+NVE+E++K + LCDLY+++++TQ+VIF NTR KV++LT K+++ + TVSA H D+ Q+ RD IM EFRSGSSR+LI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT +D  M+ +I+KFY+  IEE+P+N+ +L
Sbjct:  229 ELTLEGIKQFYINVEQEDFKFDCLCDLYDSISVTQAVIFCNTRSKVEFLTTKLKAENFTVSAIHADLPQSDRDTIMNEFRSGSSRILIATDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDEDVGMMREIEKFYSTQIEEMPANIGEL 394          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: IF4A_YEAST (ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae GN=TIF1 PE=1 SV=3)

HSP 1 Score: 232.646 bits (592), Expect = 1.556e-60
Identity = 115/167 (68.86%), Postives = 140/167 (83.83%), Query Frame = -1
Query:  209 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 709
            ELTLEGIKQFYVNVE+EE+K E L DLY+++++TQ+VIF NTRRKV+ LT K+R+   TVSA + D+ Q  RD IM+EFRSGSSR+LI+TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT +D   + +++KFY+  IEELPS++A LL
Sbjct:  228 ELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLL 394          
The following BLAST results are available for this feature:
BLAST of CN189434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A3_BOVIN1.151e-6369.46Eukaryotic initiation factor 4A-III OS=Bos taurus ... [more]
I4A3B_XENLA1.151e-6369.46Eukaryotic initiation factor 4A-III-B OS=Xenopus l... [more]
FAL1_AJECN2.565e-6370.99ATP-dependent RNA helicase FAL1 OS=Ajellomyces cap... [more]
I4A3A_XENLA7.462e-6368.86Eukaryotic initiation factor 4A-III-A OS=Xenopus l... [more]
FAL1_USTMA9.746e-6369.46ATP-dependent RNA helicase FAL1 OS=Ustilago maydis... [more]
IF4A_AJECN3.703e-6282.27ATP-dependent RNA helicase eIF4A OS=Ajellomyces ca... [more]
IF4A_YARLI8.250e-6266.47ATP-dependent RNA helicase eIF4A OS=Yarrowia lipol... [more]
FAL1_YARLI1.078e-6167.07ATP-dependent RNA helicase FAL1 OS=Yarrowia lipoly... [more]
IF4A_PICGU2.401e-6166.87ATP-dependent RNA helicase eIF4A OS=Pichia guillie... [more]
IF4A_YEAST1.556e-6068.86ATP-dependent RNA helicase eIF4A OS=Saccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N15_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189434 ID=CN189434; Name=CN189434; organism=Citrus sinensis; type=EST; length=709bp
CCCTTTTTTTTTCAATGTGCATGACCCATATGATTAAATGGTCGGATATG
TTTGAGAACAACATTAATTTAAGACACTAGACGGAAAGGAAGAAGAAACC
AAAAAAAAAAAAAAAAGGGGAGAAAATATCCACCACATTAAATAGTACTT
GCAAAATCAGGAAACCCCTTCTTGCCTCGACAAACTTACAAAAAACAGAA
CCTCCTCAAAGAAGGTCAGCAACATTTGAAGGCAGCTCCTCAATGACCAC
GTTATAGAACTTTTGAATATCAAAAAGCATTCTCTCATCATCCCTTGTCA
CAAAATTAATGGCAACACCCTTTCTTCCAAATCGACCACTTCGTCCAATA
CGGTGAAGGTAGTTTTCTGGTTGAGTCGGCAGATCATAATTTATGACAAG
TGAAACTTGCTGCACATCAATACCACGAGCCAACAGATCAGTGGTGATGA
GAACACGAGAAGAACCAGAGCGAAATTCACGCATAATGATATCTCGGGTG
TTCTGATCCATGTCCCCATGAGTGGCAGAGACTGTATGGTCACGGCTTCG
CATCTTGTCAGTAAGCCAGTCGACCTTTCGCCGAGTGTTCACAAAGATGA
CACTCTGGGTTATGGCCAGAGTCTCATAAAGATCACAGAGTGTTTCAAGC
TTCCATTCTTCCTTCTCAACATTGACATAAAACTGCTTGATACCCTCAAG
GGTGAGTTC
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