CN189431

Overview
NameCN189431
Unique NameCN189431
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189431 vs. ExPASy Swiss-Prot
Match: MUTL_CLOB8 (DNA mismatch repair protein mutL OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=mutL PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.695e-24
Identity = 72/227 (31.72%), Postives = 119/227 (52.42%), Query Frame = 2
Query:   11 EDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMENEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYV-AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVVPPEHVDVNVPPT 688
            ED+ +I ++GFRGEAL S+  VG V + +       GY +S   G   +E   C   KGT + V++LF+N+ AR+K L++ S + + I D+++R+++ +  +SF  + +   +  +H+       D IRT+YG S+  N++      Y   SS +  + GYV         +    +FVN R ++   L  AVE  + +       PF  + I V PE+VDVN+ PT
Sbjct:   85 EDIYNIHTLGFRGEALPSIASVGKVNLKSKQDEEAFGYEISIEGG-KASEVTECGINKGTILEVQDLFFNVPARKKFLKSVSKESSLINDIVTRLSLANPKISF--KLYNNHKKVLHTFGNGDLKDVIRTIYGKSITDNIL------YFSDSSDLITVYGYVGTEEIARGSRNNQSIFVNRRYIKNRALAIAVEQAFKSFSTVNKFPFFILFIEVYPEYVDVNIHPT 302          
BLAST of CN189431 vs. ExPASy Swiss-Prot
Match: MUTL_STRTD (DNA mismatch repair protein mutL OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=mutL PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.931e-24
Identity = 69/226 (30.53%), Postives = 119/226 (52.65%), Query Frame = 2
Query:   14 DLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMENEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYV-AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVVPPEHVDVNVPPT 688
            DL  I+++GFRGEAL S+  + H+T+ T   G ++G ++  + G +E++      V GT+I VENLFYN  AR K +++   +   IVD+++R+++ H  V+F+    G  R    +  T     +I  +YG++ A  +V++  S+ +      F++ GYVS      A +  + + +N R ++   L RA+   Y +       P   + I + P   DVNV PT
Sbjct:   86 DLFRIRTLGFRGEALPSIASISHLTIVTAADGEVYGTKLVAKGGEIESQDPISTPV-GTKITVENLFYNTPARLKYMKSLQAELAHIVDVVNRLSLAHPEVAFTLLNDG--RQLTQTSGTGDLRQAIAGIYGLTTAKKMVEISNSDLD------FEVSGYVSLPELTRANRNYITILINGRYIKNFLLNRAIFDGYGSKLMVGRFPIAVIDIQIDPYLADVNVHPT 302          
BLAST of CN189431 vs. ExPASy Swiss-Prot
Match: MUTL_STRT2 (DNA mismatch repair protein mutL OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=mutL PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.931e-24
Identity = 69/226 (30.53%), Postives = 119/226 (52.65%), Query Frame = 2
Query:   14 DLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMENEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYV-AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVVPPEHVDVNVPPT 688
            DL  I+++GFRGEAL S+  + H+T+ T   G ++G ++  + G +E++      V GT+I VENLFYN  AR K +++   +   IVD+++R+++ H  V+F+    G  R    +  T     +I  +YG++ A  +V++  S+ +      F++ GYVS      A +  + + +N R ++   L RA+   Y +       P   + I + P   DVNV PT
Sbjct:   86 DLFRIRTLGFRGEALPSIASISHLTIVTAADGEVYGTKLVAKGGEIESQDPISTPV-GTKITVENLFYNTPARLKYMKSLQAELAHIVDVVNRLSLAHPEVAFTLLNDG--RQLTQTSGTGDLRQAIAGIYGLTTAKKMVEISNSDLD------FEVSGYVSLPELTRANRNYITILINGRYIKNFLLNRAIFDGYGSKLMVGRFPIAVIDIQIDPYLADVNVHPT 302          
BLAST of CN189431 vs. ExPASy Swiss-Prot
Match: MUTL_STRT1 (DNA mismatch repair protein mutL OS=Streptococcus thermophilus (strain CNRZ 1066) GN=mutL PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.931e-24
Identity = 69/226 (30.53%), Postives = 119/226 (52.65%), Query Frame = 2
Query:   14 DLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMENEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYV-AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVVPPEHVDVNVPPT 688
            DL  I+++GFRGEAL S+  + H+T+ T   G ++G ++  + G +E++      V GT+I VENLFYN  AR K +++   +   IVD+++R+++ H  V+F+    G  R    +  T     +I  +YG++ A  +V++  S+ +      F++ GYVS      A +  + + +N R ++   L RA+   Y +       P   + I + P   DVNV PT
Sbjct:   86 DLFRIRTLGFRGEALPSIASISHLTIVTAADGEVYGTKLVAKGGEIESQDPISTPV-GTKITVENLFYNTPARLKYMKSLQAELAHIVDVVNRLSLAHPEVAFTLLNDG--RQLTQTSGTGDLRQAIAGIYGLTTAKKMVEISNSDLD------FEVSGYVSLPELTRANRNYITILINGRYIKNFLLNRAIFDGYGSKLMVGRFPIAVIDIQIDPYLADVNVHPT 302          
BLAST of CN189431 vs. ExPASy Swiss-Prot
Match: MUTL_CLOBK (DNA mismatch repair protein mutL OS=Clostridium botulinum (strain Okra / Type B1) GN=mutL PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.439e-24
Identity = 73/227 (32.16%), Postives = 117/227 (51.54%), Query Frame = 2
Query:   11 EDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMENEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAK-KTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVVPPEHVDVNVPPT 688
            ED+  I +MGFRGEALAS++ V    + +    +  G  +    G +E        V GT I V +LFYN+ AR K L+++  D + I D+++R  + H ++SF+    G  +  + S  T +  DSIR VY  +++ NL+  E      S   +  + G++  +    K +T   +FVN R V+   +  AVE  + +     S PF  + I + PE++DVNV PT
Sbjct:   85 EDIYKISTMGFRGEALASISSVSKTKLKSRVDSYNFGKEIYIEGGKIEYLKDTGCNV-GTTIEVSDLFYNVPARLKFLKSARSDSSSISDIVNRFILAHPDISFNLINKG--KQSIKSYGTGNLKDSIRCVYNKTISENLINFE------SHKDIISVYGFIGKTEISRKSRTNQSIFVNKRYVKSKFITAAVENAFKSFLTVNSYPFFVIFIDIFPEYIDVNVHPT 302          
BLAST of CN189431 vs. ExPASy Swiss-Prot
Match: MUTL_LACAC (DNA mismatch repair protein mutL OS=Lactobacillus acidophilus GN=mutL PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.410e-24
Identity = 76/226 (33.63%), Postives = 120/226 (53.10%), Query Frame = 2
Query:   14 DLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMENEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMV-LFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVVPPEHVDVNVPPT 688
            DL  + ++GFRGEALAS++ V HV + T TKG + G + ++  G  + +  A AA +GTQI V +LF+N  AR K L++   +  KIVD+++R+A+ + +VSF+    G  +  + +    +   ++  VYG  +A  + + EA + ND     FK+ G +S           V + +N R +    L  A+   Y A       P I ++I V P  VDVNV PT
Sbjct:   86 DLFKVATLGFRGEALASISAVSHVEILTATKGAI-GVKATFSGGNKKGQEDA-AAREGTQITVRDLFFNTPARLKYLRSPRTEIMKIVDIINRLALGYPSVSFTLSNTG--KVLLRTPGNGNLKQTVANVYGRHIAEKMEEFEAKD-ND-----FKISGLMSKPELTRSTRNFVSILLNGRYIRNFQLNTAIMDGYGAKLAARHYPIIVLAIQVDPLLVDVNVHPT 301          
BLAST of CN189431 vs. ExPASy Swiss-Prot
Match: MUTL_CLOB1 (DNA mismatch repair protein mutL OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=mutL PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.410e-24
Identity = 73/227 (32.16%), Postives = 116/227 (51.10%), Query Frame = 2
Query:   11 EDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMENEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAK-KTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVVPPEHVDVNVPPT 688
            ED+  I +MGFRGEALAS++ V    + +    +  G  +    G +E        V GT I V +LFYN+ AR K L+++  D + I D+++R  + H ++SF+    G  +  + S  T +  DSIR VY  +++ NL+  E      S   +  + G++       K +T   +FVN R V+   +  AVE  + +     S PF  + I + PE++DVNV PT
Sbjct:   85 EDIYKISTMGFRGEALASISSVSKTKLKSRVDSYNFGKEIYIEGGKIEYLKDTGCNV-GTTIEVSDLFYNVPARLKFLKSARSDSSSISDIVNRFILSHPDISFNLINKG--KQSIKSYGTGNLKDSIRCVYNKTISENLINFE------SHKDIISVYGFIGKPEISRKSRTNQSIFVNKRYVKSKFITAAVENAFKSFLTVNSYPFFVIFIDIFPEYIDVNVHPT 302          
BLAST of CN189431 vs. ExPASy Swiss-Prot
Match: MUTL_CLOBM (DNA mismatch repair protein mutL OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=mutL PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.098e-23
Identity = 73/227 (32.16%), Postives = 116/227 (51.10%), Query Frame = 2
Query:   11 EDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMENEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAK-KTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVVPPEHVDVNVPPT 688
            ED+  I +MGFRGEALAS++ V    + +    +  G  +    G +E        V GT I V +LFYN+ AR K L+++  D + I D+++R  + H ++SF+    G  +  + S  T +  DSIR VY  +++ NL+  E      S   +  + G++       K +T   +FVN R V+   +  AVE  + +     S PF  + I + PE++DVNV PT
Sbjct:   85 EDIYKISTMGFRGEALASISSVSKTKLKSRVDSYNFGKEIYIEGGKIEYLKDTGCNV-GTTIEVSDLFYNVPARLKFLKSARSDSSSISDIVNRFILAHPDISFNLINKG--KQSIKSYGTGNLKDSIRCVYNKTISENLINFE------SHKDIISVYGFIGKPEISRKSRTNQSIFVNKRYVKSKFITAAVENAFKSFLTVNSYPFFVIFIDIFPEYIDVNVHPT 302          
BLAST of CN189431 vs. ExPASy Swiss-Prot
Match: MUTL_CLOBL (DNA mismatch repair protein mutL OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=mutL PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.098e-23
Identity = 73/227 (32.16%), Postives = 116/227 (51.10%), Query Frame = 2
Query:   11 EDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMENEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAK-KTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVVPPEHVDVNVPPT 688
            ED+  I +MGFRGEALAS++ V    + +    +  G  +    G +E        V GT I V +LFYN+ AR K L+++  D + I D+++R  + H ++SF+    G  +  + S  T +  DSIR VY  +++ NL+  E      S   +  + G++       K +T   +FVN R V+   +  AVE  + +     S PF  + I + PE++DVNV PT
Sbjct:   85 EDIYKISTMGFRGEALASISSVSKTKLKSRVDSYNFGKEIYIEGGKIEYLKDTGCNV-GTTIEVSDLFYNVPARLKFLKSARSDSSSISDIVNRFILAHPDISFNLINKG--KQSIKSYGTGNLKDSIRCVYNKTISENLINFE------SHKDIISVYGFIGKPEISRKSRTNQSIFVNKRYVKSKFITAAVENAFKSFLTVNSYPFFVIFIDIFPEYIDVNVHPT 302          
BLAST of CN189431 vs. ExPASy Swiss-Prot
Match: MUTL_CLOBJ (DNA mismatch repair protein mutL OS=Clostridium botulinum (strain Kyoto / Type A2) GN=mutL PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.098e-23
Identity = 73/227 (32.16%), Postives = 116/227 (51.10%), Query Frame = 2
Query:   11 EDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMENEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAK-KTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVVPPEHVDVNVPPT 688
            ED+  I +MGFRGEALAS++ V    + +    +  G  +    G +E        V GT I V +LFYN+ AR K L+++  D + I D+++R  + H ++SF+    G  +  + S  T +  DSIR VY  +++ NL+  E      S   +  + G++       K +T   +FVN R V+   +  AVE  + +     S PF  + I + PE++DVNV PT
Sbjct:   85 EDIYKISTMGFRGEALASISSVSKTKLKSRVDSYNFGKEIYIEGGKIEYLKDTGCNV-GTTIEVSDLFYNVPARLKFLKSARSDSSSISDIVNRFILAHPDISFNLINKG--KQSIKSYGTGNLKDSIRCVYNKTISENLINFE------SHKDIISVYGFIGKPEISRKSRTNQSIFVNKRYVKSKFITAAVENAFKSFLTVNSYPFFVIFIDIFPEYIDVNVHPT 302          
The following BLAST results are available for this feature:
BLAST of CN189431 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
MUTL_CLOB81.695e-2431.72DNA mismatch repair protein mutL OS=Clostridium be... [more]
MUTL_STRTD4.931e-2430.53DNA mismatch repair protein mutL OS=Streptococcus ... [more]
MUTL_STRT24.931e-2430.53DNA mismatch repair protein mutL OS=Streptococcus ... [more]
MUTL_STRT14.931e-2430.53DNA mismatch repair protein mutL OS=Streptococcus ... [more]
MUTL_CLOBK6.439e-2432.16DNA mismatch repair protein mutL OS=Clostridium bo... [more]
MUTL_LACAC8.410e-2433.63DNA mismatch repair protein mutL OS=Lactobacillus ... [more]
MUTL_CLOB18.410e-2432.16DNA mismatch repair protein mutL OS=Clostridium bo... [more]
MUTL_CLOBM1.098e-2332.16DNA mismatch repair protein mutL OS=Clostridium bo... [more]
MUTL_CLOBL1.098e-2332.16DNA mismatch repair protein mutL OS=Clostridium bo... [more]
MUTL_CLOBJ1.098e-2332.16DNA mismatch repair protein mutL OS=Clostridium bo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001N13_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189431 ID=CN189431; Name=CN189431; organism=Citrus sinensis; type=EST; length=690bp
GAGGAAGTATGAGGACTTGCAATCAATCAAATCCATGGGTTTCAGAGGAG
AGGCTTTGGCAAGCATGACTTACGTCGGCCATGTTACCGTCACAACCATC
ACTAAAGGCCACTTGCACGGTTACCGGGTTTCATATAGAGATGGTGTCAT
GGAGAATGAACCAAAAGCATGTGCTGCTGTCAAAGGCACGCAGATAATGG
TGGAGAATTTGTTTTACAACATGATTGCTCGAAGGAAGACACTGCAAAAT
TCTTCTGATGATTATACAAAAATTGTTGATTTGCTAAGCCGGATGGCCAT
TCACCACACAAATGTGAGCTTCTCTTGCAGAAAGCACGGAGCTGCTAGAG
CAGATGTTCACTCTATTGCTACATCGTCAAGGCTTGATTCTATCAGAACT
GTATATGGAGTGTCGGTTGCTAGTAATTTAGTGCAGTTAGAAGCTTCAGA
GTACAATGATTCCTCAAGTTTTGTTTTCAAGATGGATGGCTACGTTTCCA
ATTCAAATTATGTGGCAAAGAAAACAACAATGGTGCTTTTTGTCAATGAT
AGGTTGGTTGAGTGTGCTCCTTTAAAGAGAGCTGTAGAAATTGTTTATGC
TGCAACCTTCCCTAAAGCATCAAAACCTTTCATCTATATGTCTATAGTGG
TACCACCTGAGCATGTTGATGTGAATGTGCCACCCACAAA
back to top