CN189431

Overview
NameCN189431
Unique NameCN189431
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189431 vs. ExPASy Swiss-Prot
Match: MUTL_MESSB (DNA mismatch repair protein mutL OS=Mesorhizobium sp. (strain BNC1) GN=mutL PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.252e-11
Identity = 58/227 (25.55%), Postives = 101/227 (44.49%), Query Frame = 2
Query:   14 DLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMENEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIAT--SSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYV-AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVVPPEHVDVNVPP 685
            D+  I+++GFRGEAL S+  VG +T+ + T     G  ++  DG   +  K  AA +GT + V +LF+   AR K +++   +   I +++ R+A+    V F          ++ +++      L  +  + G   A N + ++A         VF + GY S  ++          +VN R V    +  A+   Y    P+       + I + P  VDVNV P
Sbjct:   83 DIHDIRTLGFRGEALPSIGSVGRLTLRSRTPDADGGAEITV-DGGKASAVKPVAANRGTTVEVRDLFFATPARLKFMKSERAEAAAITEVVKRIALAFPAVRFMLSGTDRTSTELPAVSADGDGLLRRLGQIIGKDFAENALPIDAEREG-----VF-LTGYASIPSFTRGNALAQFAYVNGRPVRDKLIAGAIRGAYMDALPRDRHAVTALFISLDPALVDVNVHP 302          
BLAST of CN189431 vs. ExPASy Swiss-Prot
Match: MUTL_RICTY (DNA mismatch repair protein mutL OS=Rickettsia typhi GN=mutL PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 51/233 (21.89%), Postives = 108/233 (46.35%), Query Frame = 2
Query:   14 DLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMENEPKACAAV--KGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFV------FKMDGYVSNSNYV-AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVVPPEHVDVNVPP 685
            D  +I + GFRGEAL S+  +  + +T+  +     +++    G   N+ +   +V  +GT+I + +LF+   AR K L++   +    +D++ ++A+ H  +SF+          +H+     +L      +  ++   ++ +    +  ++S++      F + GY S   Y  A      LF+N+R ++   L+ A+ + Y     +       + + + P+ VDVNV P
Sbjct:   84 DFLNIHTFGFRGEALPSIAAISKMLITSKKREADKAFQIKLIGG---NKQQITVSVHNEGTKIEIRDLFFATPARLKFLKSDRTELAASLDIVKKIALAHPKISFNL---------IHNSKNLLKLKGQNKDFETNLKQRIIDVIGDVFIKNASYINFKTPDFSICGYTSIPTYSRASSEDQFLFINNRPIKDKLLQVALRVAYQDYLARDRYALCAIFLQIDPQLVDVNVHP 304          
BLAST of CN189431 vs. ExPASy Swiss-Prot
Match: MUTL_CHLPN (DNA mismatch repair protein mutL OS=Chlamydia pneumoniae GN=mutL PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 54/228 (23.68%), Postives = 98/228 (42.98%), Query Frame = 2
Query:    2 RKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMENEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVVPPEHVDVNVPP 685
            R++ D+ S+ S GFRGEAL S+  +  + + +  +G      V +   ++  EP  CA   GT ++V +LFYN+  RR   ++   D   I  L+    +   N+ +S    G      H     ++    +      +  + +Q +A   +  ++ V  +    S S +   +    +F+NDR +E   + + V   YA   P    P   + + +P    D NV P
Sbjct:   85 REFSDIFSLNSFGFRGEALPSIASISKMEIQSSIEGDEGVRTVIHGGDIVSCEP--CARQLGTTVIVNSLFYNVPVRRGFQKSMQSDRLGIRKLIENRILSTANIGWSWISEG------HHEIQIAKQQGFQERVAYVMGDHFMQ-DALTIDKEANGVRIVGVLGSPSFHRPTRQGQKIFINDRPIESLFISKKVGDAYALLLPLHRYPVFVLKLYLPSSWCDFNVHP 303          
The following BLAST results are available for this feature:
BLAST of CN189431 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
MUTL_MESSB6.252e-1125.55DNA mismatch repair protein mutL OS=Mesorhizobium ... [more]
MUTL_RICTY8.165e-1121.89DNA mismatch repair protein mutL OS=Rickettsia typ... [more]
MUTL_CHLPN8.165e-1123.68DNA mismatch repair protein mutL OS=Chlamydia pneu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001N13_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189431 ID=CN189431; Name=CN189431; organism=Citrus sinensis; type=EST; length=690bp
GAGGAAGTATGAGGACTTGCAATCAATCAAATCCATGGGTTTCAGAGGAG
AGGCTTTGGCAAGCATGACTTACGTCGGCCATGTTACCGTCACAACCATC
ACTAAAGGCCACTTGCACGGTTACCGGGTTTCATATAGAGATGGTGTCAT
GGAGAATGAACCAAAAGCATGTGCTGCTGTCAAAGGCACGCAGATAATGG
TGGAGAATTTGTTTTACAACATGATTGCTCGAAGGAAGACACTGCAAAAT
TCTTCTGATGATTATACAAAAATTGTTGATTTGCTAAGCCGGATGGCCAT
TCACCACACAAATGTGAGCTTCTCTTGCAGAAAGCACGGAGCTGCTAGAG
CAGATGTTCACTCTATTGCTACATCGTCAAGGCTTGATTCTATCAGAACT
GTATATGGAGTGTCGGTTGCTAGTAATTTAGTGCAGTTAGAAGCTTCAGA
GTACAATGATTCCTCAAGTTTTGTTTTCAAGATGGATGGCTACGTTTCCA
ATTCAAATTATGTGGCAAAGAAAACAACAATGGTGCTTTTTGTCAATGAT
AGGTTGGTTGAGTGTGCTCCTTTAAAGAGAGCTGTAGAAATTGTTTATGC
TGCAACCTTCCCTAAAGCATCAAAACCTTTCATCTATATGTCTATAGTGG
TACCACCTGAGCATGTTGATGTGAATGTGCCACCCACAAA
back to top