CN189431

Overview
NameCN189431
Unique NameCN189431
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189431 vs. ExPASy Swiss-Prot
Match: MUTL_LISW6 (DNA mismatch repair protein mutL OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=mutL PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.703e-21
Identity = 74/231 (32.03%), Postives = 114/231 (49.35%), Query Frame = 2
Query:   14 DLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMENEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYV-------SNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVVPPEHVDVNVPP 685
            DL  + ++GFRGEAL S+  V H+++ T T G   G  +S   G +  E K+  A KGTQI V  LF+N  AR K L++   +   I D+L+R+A+ H ++SF    +G      +      ++  I  +YGVS+A   + ++A       S  F + GY        SN NY++        +N R ++   L +A++  Y    P    P I + I + P  VDVNV P
Sbjct:   87 DLFRVHTLGFRGEALPSIASVSHLSMETST-GETKGTTISLEGGKIM-EQKSGHARKGTQIEVSQLFFNTPARLKYLKSLPTELGNITDILNRLALAHPDISFRFSHNGKPLLQTNGNGDLRQV--IAAIYGVSIARKSIPVKA------ESLDFNISGYAVLPEVNRSNRNYIS------TIINGRFIKNFALVKAIQEGYHTLLPIGRFPIIVLQIEMDPIIVDVNVHP 301          
BLAST of CN189431 vs. ExPASy Swiss-Prot
Match: MUTL_LACS1 (DNA mismatch repair protein mutL OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=mutL PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.703e-21
Identity = 73/227 (32.16%), Postives = 115/227 (50.66%), Query Frame = 2
Query:   11 EDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMENEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYV-AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVVPPEHVDVNVPPT 688
            +DL  + ++GFRGEAL S+  V  V + T   G   G ++  + G +  E    A+ +GT I V +LFYN  AR K L++   + + I D+++R+A+ HT+V+ S   +G  R  + S    +   +I  +YGV  A  +++ E       ++  FK+ GY S      A +  + L VN R V+   L +AV   Y +       P   +SI + P  VDVNV PT
Sbjct:   85 KDLFKVHTLGFRGEALPSIASVSDVVMETAVSGRA-GTKIHIKGGEVL-EKTLSASREGTTITVSDLFYNTPARLKYLKSVQTELSYISDIVNRLALSHTDVALSLTNNG--RQLLQSAGNGNLQQTIGAIYGVQNARQMIKFE------DANLDFKISGYTSLPKLTRASRNYISLLVNGRYVKNFQLTKAVIEGYGSKLMTGRYPITVLSIELDPTLVDVNVHPT 301          
BLAST of CN189431 vs. ExPASy Swiss-Prot
Match: MUTL_THEP3 (DNA mismatch repair protein mutL OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=mutL PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 69/225 (30.67%), Postives = 112/225 (49.78%), Query Frame = 2
Query:   14 DLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMENEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVVPPEHVDVNVPPT 688
            DL SI ++GFRGEALAS+  V HVT+ T  +G L G +V    G +  E   C   KG  I V ++F+N  ARRK L+  S +   I D+++++ + H  VSF   K    +    +    +  D I  ++G  V S+L+    S   +S     K+    ++ NY + +     +VN R V+   L  AV+  +    P    P +++ + + P  +DVN+ P+
Sbjct:   86 DLYSIGTLGFRGEALASIAAVSHVTLQTKEEGALFGTKVVVEGGKVV-EKTTCGCAKGCSIEVRDVFFNTPARRKFLKRPSTESMYITDVVTKLCLSHPEVSFKYVKD--RKLQFITSGNGNIEDVILRLFGNEVYSSLM----SASFESEDLKLKILAGKNSLNY-SNRNMQFFYVNGRYVKNKTLSAAVDEAFKTYIPVNRYPAVFLYMEIDPRQIDVNIHPS 302          
BLAST of CN189431 vs. ExPASy Swiss-Prot
Match: MUTL_PELLD (DNA mismatch repair protein mutL OS=Pelodictyon luteolum (strain DSM 273) GN=mutL PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 68/229 (29.69%), Postives = 112/229 (48.91%), Query Frame = 2
Query:    2 RKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMENEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSN-SNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVVPPEHVDVNVPP 685
            R  +DL ++ ++GFRGEALAS++ V H  + T         R  Y  G+   E +      GT + V NLFYN+ ARRK L++++ +Y  I +L+   ++ +  + +          ++ +  TS  L+ + T YG   A +L+  E  E ND  S    + GY+   +    KK     F+N R ++   L +A++  YA    +   PF  + + + P  VDVNV P
Sbjct:   82 RDVDDLDTLGTLGFRGEALASISSVSHFELRTRMTDAPVALRFRYEGGIAVEESEVQGEA-GTSVSVRNLFYNVPARRKFLKSNATEYGHIFELVRSFSLAYPEIQWQLLNDD---QELFNFRTSDMLERLDTFYGKGFADSLI--EVGEENDYLS----IRGYIGRPALQKRKKLDQYFFINRRPIQNRMLTQALQQAYAELLVERQAPFALLFLGIDPSRVDVNVHP 300          
BLAST of CN189431 vs. ExPASy Swiss-Prot
Match: MUTL_STRA3 (DNA mismatch repair protein mutL OS=Streptococcus agalactiae serotype III GN=mutL PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.485e-20
Identity = 62/230 (26.96%), Postives = 120/230 (52.17%), Query Frame = 2
Query:    2 RKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMENEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYV-AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVVPPEHVDVNVPPT 688
            +   DL  I+++GFRGEAL S+  +  +T+ T T+    G  +  + G +E + +  ++ +GT+I+VENLF+N  AR K +++   +   I+D+++R+++ H  V+F+    G  +    +  T     +I  +YG++ A  ++++  ++ +      F++ GYVS      A +  + L +N R ++   L R++   Y +       P   + I + P   DVNV PT
Sbjct:   82 KSQSDLFRIRTLGFRGEALPSIASISLMTIKTATEQGKQGTLLVAKGGNIEKQ-EVVSSPRGTKILVENLFFNTPARLKYMKSLQSELAHIIDIVNRLSLAHPEVAFTLINDG--KEMTKTSGTGDLRQAIAGIYGLNTAKKMIEISNADLD------FEISGYVSLPELTRANRNYITLLINGRYIKNFLLNRSILDGYGSKLMVGRFPIAVIDIQIDPYLADVNVHPT 302          
BLAST of CN189431 vs. ExPASy Swiss-Prot
Match: MUTL_STRA1 (DNA mismatch repair protein mutL OS=Streptococcus agalactiae serotype Ia GN=mutL PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.485e-20
Identity = 62/230 (26.96%), Postives = 120/230 (52.17%), Query Frame = 2
Query:    2 RKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMENEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYV-AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVVPPEHVDVNVPPT 688
            +   DL  I+++GFRGEAL S+  +  +T+ T T+    G  +  + G +E + +  ++ +GT+I+VENLF+N  AR K +++   +   I+D+++R+++ H  V+F+    G  +    +  T     +I  +YG++ A  ++++  ++ +      F++ GYVS      A +  + L +N R ++   L R++   Y +       P   + I + P   DVNV PT
Sbjct:   82 KSQSDLFRIRTLGFRGEALPSIASISLMTIKTATEQGKQGTLLVAKGGNIEKQ-EVVSSPRGTKILVENLFFNTPARLKYMKSLQSELAHIIDIVNRLSLAHPEVAFTLINDG--KEMTKTSGTGDLRQAIAGIYGLNTAKKMIEISNADLD------FEISGYVSLPELTRANRNYITLLINGRYIKNFLLNRSILDGYGSKLMVGRFPIAVIDIQIDPYLADVNVHPT 302          
BLAST of CN189431 vs. ExPASy Swiss-Prot
Match: MUTL_LACJO (DNA mismatch repair protein mutL OS=Lactobacillus johnsonii GN=mutL PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.485e-20
Identity = 74/229 (32.31%), Postives = 117/229 (51.09%), Query Frame = 2
Query:   14 DLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMENEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLD---SIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMV-LFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVVPPEHVDVNVPPT 688
            DL +I ++GFRGEALAS+  V HV VTT +  +L G R  +  G  +   +  A+ KGT+I V +LF+N  AR K L++   +  KIVD+++R+A+ H +VSF+   +G        + T+ R D    I  +YG  +A  +  L+    +      F++ G +S+ N        + L +N R ++   L +A+   Y         P   + I + P  VDVNV PT
Sbjct:   86 DLFNISTLGFRGEALASIAAVSHVEVTT-SNDNLGGVRAIF-SGSEKKLQEDAASPKGTKITVSDLFFNTPARLKYLRSERTEILKIVDIVNRLALGHPDVSFTLTNNGKV-----LLKTNGRDDLRQDIANIYGRQLAEKMNILKGKSPD------FEISGLISDPNTTRSNRNFISLLLNGRYIKNYRLTQAIMAGYGNKLRPRRYPIAVVKIELDPLLVDVNVHPT 301          
BLAST of CN189431 vs. ExPASy Swiss-Prot
Match: MUTL_LACGA (DNA mismatch repair protein mutL OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=mutL PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.939e-20
Identity = 75/229 (32.75%), Postives = 118/229 (51.53%), Query Frame = 2
Query:   14 DLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMENEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLD---SIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMV-LFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVVPPEHVDVNVPPT 688
            DL +I ++GFRGEALAS+  V HV V T +  +L G R  +     + +  A A+ KGT+I V +LF+N  AR K L++   +  KIVD+++R+A+ H +VSF+   +G        + T+ R D    I  +YG  +A  +  L+ S  +      FK+ G +S+ N        + L +N R +    L +A+   Y +       P   ++I + P  VDVNV PT
Sbjct:   86 DLFNISTLGFRGEALASIAAVSHVEVIT-SSDNLGGVRAIFVGSEKKLQEDA-ASPKGTKISVSDLFFNTPARLKYLRSERTETLKIVDIVNRLALGHPDVSFTLTNNGKI-----LLKTNGRNDLRQDIANIYGHQLAEKMEVLKGSSPD------FKITGLLSDPNTTRSSRNFISLLLNGRYIRNYRLTQAIIAGYGSKLRPRRYPIAVVNIELDPLLVDVNVHPT 301          
BLAST of CN189431 vs. ExPASy Swiss-Prot
Match: MUTL_HAEIN (DNA mismatch repair protein mutL OS=Haemophilus influenzae GN=mutL PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.939e-20
Identity = 66/228 (28.95%), Postives = 119/228 (52.19%), Query Frame = 2
Query:   11 EDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMENEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHG-AARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTM-VLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVVPPEHVDVNVPPT 688
            +DL++I S+GFRGEALAS++ V  +T+T+ T+     ++V  +   ME   K  +   GT + V NLF+N  ARRK L+    +++ I +++ R+A+   N +F+   +G   R    + A + +L  +  + G     N +++E  +++D       + G+V+  N+   +  +   ++N R+V    +  A+   YA   P  + P   + I + P  VDVNV PT
Sbjct:   84 DDLEAILSLGFRGEALASISSVSRLTLTSRTEEQTEAWQVYAQGRDMETTIKPASHPVGTTVEVANLFFNTPARRKFLRTDKTEFSHIDEVIRRIALTKFNTAFTLTHNGKIIRQYRPAEAINQQLKRVAAICGDDFVKNALRIE-WKHDD-----LHLSGWVATPNFSRTQNDLSYCYINGRMVRDKVISHAIRQAYAQYLPTDAYPAFVLFIDLNPHDVDVNVHPT 305          
BLAST of CN189431 vs. ExPASy Swiss-Prot
Match: MUTL_DESRM (DNA mismatch repair protein mutL OS=Desulfotomaculum reducens (strain MI-1) GN=mutL PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.532e-20
Identity = 69/231 (29.87%), Postives = 113/231 (48.92%), Query Frame = 2
Query:    2 RKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMEN-EPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYV-AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVVPPEHVDVNVPPT 688
            ++ EDL SI ++GFRGEAL S+  V  VT+TT T+  L G  +    G M+N  P  C    GT I +++LF+N  ARRK L+ ++ + +++ DL++R+A+   +V F  R     R    S  T S  D+   ++G+    +++++           +  + G +S      A +     F+N R +    L   ++  Y    P    P   + I + P  VDVNV PT
Sbjct:   82 KRAEDLNSILTLGFRGEALPSIAAVSKVTLTTRTEDELAGTTMQIEGGYMQNVVPTGCPV--GTIIEIKDLFFNTPARRKFLKTANAETSQVSDLITRLAMARPDVRFELR--SGNRVLFSSPGTGSLKDTAAVIFGLDNVRSMLEI------GYQGKLLSVAGLISKPVLTRASRHYQNFFINGRYIRSGFLSSILQQAYDTLIPAGRFPIAILHIDIDPTQVDVNVHPT 302          
The following BLAST results are available for this feature:
BLAST of CN189431 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
MUTL_LISW68.703e-2132.03DNA mismatch repair protein mutL OS=Listeria welsh... [more]
MUTL_LACS18.703e-2132.16DNA mismatch repair protein mutL OS=Lactobacillus ... [more]
MUTL_THEP31.137e-2030.67DNA mismatch repair protein mutL OS=Thermoanaeroba... [more]
MUTL_PELLD1.137e-2029.69DNA mismatch repair protein mutL OS=Pelodictyon lu... [more]
MUTL_STRA31.485e-2026.96DNA mismatch repair protein mutL OS=Streptococcus ... [more]
MUTL_STRA11.485e-2026.96DNA mismatch repair protein mutL OS=Streptococcus ... [more]
MUTL_LACJO1.485e-2032.31DNA mismatch repair protein mutL OS=Lactobacillus ... [more]
MUTL_LACGA1.939e-2032.75DNA mismatch repair protein mutL OS=Lactobacillus ... [more]
MUTL_HAEIN1.939e-2028.95DNA mismatch repair protein mutL OS=Haemophilus in... [more]
MUTL_DESRM2.532e-2029.87DNA mismatch repair protein mutL OS=Desulfotomacul... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001N13_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189431 ID=CN189431; Name=CN189431; organism=Citrus sinensis; type=EST; length=690bp
GAGGAAGTATGAGGACTTGCAATCAATCAAATCCATGGGTTTCAGAGGAG
AGGCTTTGGCAAGCATGACTTACGTCGGCCATGTTACCGTCACAACCATC
ACTAAAGGCCACTTGCACGGTTACCGGGTTTCATATAGAGATGGTGTCAT
GGAGAATGAACCAAAAGCATGTGCTGCTGTCAAAGGCACGCAGATAATGG
TGGAGAATTTGTTTTACAACATGATTGCTCGAAGGAAGACACTGCAAAAT
TCTTCTGATGATTATACAAAAATTGTTGATTTGCTAAGCCGGATGGCCAT
TCACCACACAAATGTGAGCTTCTCTTGCAGAAAGCACGGAGCTGCTAGAG
CAGATGTTCACTCTATTGCTACATCGTCAAGGCTTGATTCTATCAGAACT
GTATATGGAGTGTCGGTTGCTAGTAATTTAGTGCAGTTAGAAGCTTCAGA
GTACAATGATTCCTCAAGTTTTGTTTTCAAGATGGATGGCTACGTTTCCA
ATTCAAATTATGTGGCAAAGAAAACAACAATGGTGCTTTTTGTCAATGAT
AGGTTGGTTGAGTGTGCTCCTTTAAAGAGAGCTGTAGAAATTGTTTATGC
TGCAACCTTCCCTAAAGCATCAAAACCTTTCATCTATATGTCTATAGTGG
TACCACCTGAGCATGTTGATGTGAATGTGCCACCCACAAA
back to top