CN189430

Overview
NameCN189430
Unique NameCN189430
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189430 vs. ExPASy Swiss-Prot
Match: ERF96_ARATH (Ethylene-responsive transcription factor ERF096 OS=Arabidopsis thaliana GN=ERF096 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.153e-13
Identity = 36/64 (56.25%), Postives = 41/64 (64.06%), Query Frame = -2
Query:  434 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXRMRGSRALLNFPLRINSG 625
            YRGVR+RPWGK+AAEIRD  K+G RVWLGTF+T              MRG  A+LNFP   N G
Sbjct:   15 YRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEEAARAYDQAAYSMRGQAAILNFPHEYNMG 78          
BLAST of CN189430 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.153e-13
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = -2
Query:  443 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXRMRGSRALLNFPLRI 631
            +HYRGVRQRPWGK+AAEIRDP K  ARVWLGTFET             + +G++A LNFP R+
Sbjct:   37 RHYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFPERV 98          
BLAST of CN189430 vs. ExPASy Swiss-Prot
Match: ERF92_ARATH (Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.506e-13
Identity = 36/59 (61.02%), Postives = 40/59 (67.80%), Query Frame = -2
Query:  455 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXRMRGSRALLNF 631
            K YRGVR+RPWGKFAAEIRD  +NG RVWLGTFE+              MRGS A+LNF
Sbjct:   80 KSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGSSAILNF 138          
BLAST of CN189430 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.506e-13
Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = -2
Query:  446 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXRMRGSRALLNFPLR 631
            +HYRGVRQRPWGK+AAEIRDP K  ARVWLGTFET             + +GS+A LNFP R
Sbjct:   90 RHYRGVRQRPWGKWAAEIRDPQK-AARVWLGTFETAEAAALAYDNAALKFKGSKAKLNFPER 150          
BLAST of CN189430 vs. ExPASy Swiss-Prot
Match: ERF94_ARATH (Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana GN=ERF094 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.967e-13
Identity = 39/89 (43.82%), Postives = 49/89 (55.06%), Query Frame = -2
Query:  404 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXRMRGSRALLNFP-------------LRINSGEPEPVRIKSK 631
            K YRGVR+RPWGKFAAEIRD  + G RVWLGTF+T              ++GS A+LNFP             + +N GE   + +K K
Sbjct:   80 KSYRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLNFPADVVEESLRKMENVNLNDGESPVIALKRK 168          
BLAST of CN189430 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.666e-12
Identity = 38/65 (58.46%), Postives = 42/65 (64.62%), Query Frame = -2
Query:  437 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXRMRGSRALLNFPLRINS 631
            K YRGVRQRPWGK+AAEIRDP K   RVWLGTFET             R RGS+A LNFP  + +
Sbjct:   59 KKYRGVRQRPWGKWAAEIRDPHK-ATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFPENVGT 122          
BLAST of CN189430 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.666e-12
Identity = 38/75 (50.67%), Postives = 47/75 (62.67%), Query Frame = -2
Query:  407 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXRMRGSRALLNFPLRINSGEPEPVRIKS 631
            + YRGVRQRPWGK+AAEIRDP +  ARVWLGTF+T             R RG++A LNFP  +    P P  ++S
Sbjct:   75 RRYRGVRQRPWGKWAAEIRDPHR-AARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPEDVRILPPPPPLLRS 148          
BLAST of CN189430 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.666e-12
Identity = 37/58 (63.79%), Postives = 37/58 (63.79%), Query Frame = -2
Query:  452 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXRMRGSRALLNFP 625
            YRGVRQRPWGKFAAEIRDP K   RVWLGTFET               RG RA LNFP
Sbjct:  136 YRGVRQRPWGKFAAEIRDP-KRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFP 192          
BLAST of CN189430 vs. ExPASy Swiss-Prot
Match: ERF93_ARATH (Ethylene-responsive transcription factor 15 OS=Arabidopsis thaliana GN=ERF15 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.175e-12
Identity = 33/63 (52.38%), Postives = 40/63 (63.49%), Query Frame = -2
Query:  443 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXRMRGSRALLNFPLRI 631
            + YRGVR+RPWGKFAAEIRD  +NG RVWLGTF+                +GS A LNFP+ +
Sbjct:   84 RSYRGVRKRPWGKFAAEIRDSTRNGIRVWLGTFDKAEEAALAYDQAAFATKGSLATLNFPVEV 146          
BLAST of CN189430 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.841e-12
Identity = 38/72 (52.78%), Postives = 46/72 (63.89%), Query Frame = -2
Query:  422 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXRMRGSRALLNFP--LRINSGEPEP 631
            ++YRGVRQRPWGK+AAEIRDP K  ARVWLGTF+T               RG +A LNFP  +R+N  +  P
Sbjct:   68 RNYRGVRQRPWGKWAAEIRDPNK-AARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFPEHIRVNPTQLYP 138          
The following BLAST results are available for this feature:
BLAST of CN189430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
ERF96_ARATH1.153e-1356.25Ethylene-responsive transcription factor ERF096 OS... [more]
EF113_ARATH1.153e-1358.73Ethylene-responsive transcription factor ERF113 OS... [more]
ERF92_ARATH1.506e-1361.02Ethylene-responsive transcription factor 1B OS=Ara... [more]
EF115_ARATH1.506e-1361.29Ethylene-responsive transcription factor ERF115 OS... [more]
ERF94_ARATH1.967e-1343.82Ethylene-responsive transcription factor ERF094 OS... [more]
RAP26_ARATH1.666e-1258.46Ethylene-responsive transcription factor RAP2-6 OS... [more]
EF110_ARATH1.666e-1250.67Ethylene-responsive transcription factor ERF110 OS... [more]
EF109_ARATH1.666e-1263.79Ethylene-responsive transcription factor ERF109 OS... [more]
ERF93_ARATH2.175e-1252.38Ethylene-responsive transcription factor 15 OS=Ara... [more]
EF112_ARATH2.841e-1252.78Ethylene-responsive transcription factor ERF112 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N13_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189430 ID=CN189430; Name=CN189430; organism=Citrus sinensis; type=EST; length=635bp
TTTTTTTTTTTTTTTTAACACACTAACTCTTTTATATTCACAATTCCCAC
TCTCTTTTTTTTTTTTTCTTTTTTTTTTTTGCAAACACCCTTCAAAGTAC
AAACAAACTTACAAATTACAAAATCACGTGCGGGGATGATCACCCCCCCG
GCCCAAGAAAAGAAGAAAAGAACTAGTAGATCTCTCGGATAAGATCGACT
TCGGAGTTTCTTCCACGTCAGCGTCAGTTTACCAATAGCTGGTCACCACG
TGTACAGGAGGCCACTCGCGCCACTTTTCCAACTCCACTTCCCATTTCCA
TCCCGGCTCGTACTGGCACCGACGCCAAGGCAGCCACCTTTCTCCTCCTC
TTGGGGGACACACTGCCACTATCCGTGGACGAAGACGGCTCCGGCGTGGA
CCGCTTCGACTTAATTCTGACCGGCTCGGGCTCACCCGAGTTGATCCTTA
GGGGAAAATTCAAAAGAGCCCTTGATCCCCTCATCCTGTAAGCGGCTCGG
TCATAAGCCAGAGCCGCATCCTCAGCCGTCTCGAAAGTCCCGAGCCAAAC
CCGAGCCCCATTCTTAGCCGGGTCACGTATTTCGGCCGCAAACTTCCCCC
AAGGTCTCTGCCTAACCCCCCTGTAATGCTTCCCC
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