CN189430

Overview
NameCN189430
Unique NameCN189430
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189430 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.846e-12
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = -2
Query:  452 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXRMRGSRALLNFP 625
            YRG+RQRPWGK+AAEIRDP + GAR+WLGTF+T             R+RGS+A +NFP
Sbjct:  125 YRGIRQRPWGKWAAEIRDP-REGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFP 181          
BLAST of CN189430 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.329e-12
Identity = 34/58 (58.62%), Postives = 41/58 (70.69%), Query Frame = -2
Query:  452 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXRMRGSRALLNFP 625
            YRG+RQRPWGK+AAEIRDP+K G RVWLGTF+T             ++RG +A LNFP
Sbjct:   50 YRGIRQRPWGKWAAEIRDPSK-GVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFP 106          
BLAST of CN189430 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.266e-12
Identity = 40/76 (52.63%), Postives = 47/76 (61.84%), Query Frame = -2
Query:  419 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXRMRGSRALLNFP-----LRINSGEPEPV 631
            + YRGVRQRPWGK+AAEIRDP K  ARVWLGTF+              R RG++A LNFP     +R  S E +PV
Sbjct:  183 RRYRGVRQRPWGKWAAEIRDPFK-AARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFPENVKLVRPASTEAQPV 257          
BLAST of CN189430 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.410e-11
Identity = 33/60 (55.00%), Postives = 39/60 (65.00%), Query Frame = -2
Query:  449 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXRMRGSRALLNFPL 628
            H+RGVR+RPWG++AAEIRDP K   RVWLGTF+T               RGS+A  NFPL
Sbjct:   32 HFRGVRKRPWGRYAAEIRDPGKK-TRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFPL 90          
BLAST of CN189430 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.410e-11
Identity = 33/60 (55.00%), Postives = 39/60 (65.00%), Query Frame = -2
Query:  449 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXRMRGSRALLNFPL 628
            HYRGVR+RPWG++AAEIRDP K  +RVWLGTF+T               RG +A  NFPL
Sbjct:   26 HYRGVRKRPWGRYAAEIRDPGKK-SRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPL 84          
BLAST of CN189430 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.141e-11
Identity = 33/58 (56.90%), Postives = 39/58 (67.24%), Query Frame = -2
Query:  452 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXRMRGSRALLNFP 625
            YRG+R+RPWGK+AAEIRDP K G RVWLGTF T             ++RG +A LNFP
Sbjct:   79 YRGIRKRPWGKWAAEIRDPRK-GVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFP 135          
BLAST of CN189430 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.141e-11
Identity = 37/75 (49.33%), Postives = 46/75 (61.33%), Query Frame = -2
Query:  401 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXRMRGSRALLNFPLRINSGEPEPVRIKSKR 625
            YRG+RQRPWGK+AAEIRDP K G+R WLGTF+T             R+RG++A +NFP      E  P  +  KR
Sbjct:  128 YRGIRQRPWGKWAAEIRDPRK-GSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFP-----EEKNPSVVSQKR 196          
BLAST of CN189430 vs. ExPASy Swiss-Prot
Match: ERF82_ARATH (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.141e-11
Identity = 35/75 (46.67%), Postives = 45/75 (60.00%), Query Frame = -2
Query:  401 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXRMRGSRALLNFPLRINSGEPEPVRIKSKR 625
            +RGVR+RPWG+FAAEIRDP K  ARVWLGTF++              +RG +A  NFP+  +S  P  +R    R
Sbjct:   28 FRGVRKRPWGRFAAEIRDPWKK-ARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNFPIDSSSPPPPNLRFNQIR 101          
BLAST of CN189430 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.141e-11
Identity = 33/67 (49.25%), Postives = 40/67 (59.70%), Query Frame = -2
Query:  428 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXRMRGSRALLNFPLRINSGEP 628
            HYRGVR+RPWG++AAEIRDP K  +RVWLGTF+T               RG +A  NFP    +  P
Sbjct:   26 HYRGVRKRPWGRYAAEIRDPGKK-SRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPSPTENQSP 91          
BLAST of CN189430 vs. ExPASy Swiss-Prot
Match: CRF4_ARATH (Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.141e-11
Identity = 37/72 (51.39%), Postives = 45/72 (62.50%), Query Frame = -2
Query:  416 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXRMRGSRALLNFPLRINSGEPEPVR 631
            K YRGVRQRPWGK+AAEIRDP +   R+WLGTF T             ++RG  AL NF ++    EPEPV+
Sbjct:  115 KKYRGVRQRPWGKWAAEIRDPEQR-RRIWLGTFATAEEAAIVYDNAAIKLRGPDALTNFTVQ---PEPEPVQ 182          
The following BLAST results are available for this feature:
BLAST of CN189430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
RA212_ARATH4.846e-1258.62Ethylene-responsive transcription factor RAP2-12 O... [more]
ERF71_ARATH6.329e-1258.62Ethylene-responsive transcription factor ERF071 OS... [more]
ABR1_ARATH8.266e-1252.63Ethylene-responsive transcription factor ABR1 OS=A... [more]
ERF80_ARATH1.410e-1155.00Ethylene-responsive transcription factor 9 OS=Arab... [more]
ERF4_NICSY1.410e-1155.00Ethylene-responsive transcription factor 4 OS=Nico... [more]
RAP23_ARATH3.141e-1156.90Ethylene-responsive transcription factor RAP2-3 OS... [more]
RAP22_ARATH3.141e-1149.33Ethylene-responsive transcription factor RAP2-2 OS... [more]
ERF82_ARATH3.141e-1146.67Ethylene-responsive transcription factor 3 OS=Arab... [more]
ERF4_TOBAC3.141e-1149.25Ethylene-responsive transcription factor 4 OS=Nico... [more]
CRF4_ARATH3.141e-1151.39Ethylene-responsive transcription factor CRF4 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N13_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189430 ID=CN189430; Name=CN189430; organism=Citrus sinensis; type=EST; length=635bp
TTTTTTTTTTTTTTTTAACACACTAACTCTTTTATATTCACAATTCCCAC
TCTCTTTTTTTTTTTTTCTTTTTTTTTTTTGCAAACACCCTTCAAAGTAC
AAACAAACTTACAAATTACAAAATCACGTGCGGGGATGATCACCCCCCCG
GCCCAAGAAAAGAAGAAAAGAACTAGTAGATCTCTCGGATAAGATCGACT
TCGGAGTTTCTTCCACGTCAGCGTCAGTTTACCAATAGCTGGTCACCACG
TGTACAGGAGGCCACTCGCGCCACTTTTCCAACTCCACTTCCCATTTCCA
TCCCGGCTCGTACTGGCACCGACGCCAAGGCAGCCACCTTTCTCCTCCTC
TTGGGGGACACACTGCCACTATCCGTGGACGAAGACGGCTCCGGCGTGGA
CCGCTTCGACTTAATTCTGACCGGCTCGGGCTCACCCGAGTTGATCCTTA
GGGGAAAATTCAAAAGAGCCCTTGATCCCCTCATCCTGTAAGCGGCTCGG
TCATAAGCCAGAGCCGCATCCTCAGCCGTCTCGAAAGTCCCGAGCCAAAC
CCGAGCCCCATTCTTAGCCGGGTCACGTATTTCGGCCGCAAACTTCCCCC
AAGGTCTCTGCCTAACCCCCCTGTAATGCTTCCCC
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