CN189430

Overview
NameCN189430
Unique NameCN189430
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189430 vs. ExPASy Swiss-Prot
Match: ERF53_ARATH (Ethylene-responsive transcription factor ERF053 OS=Arabidopsis thaliana GN=ERF053 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.102e-11
Identity = 38/75 (50.67%), Postives = 45/75 (60.00%), Query Frame = -2
Query:  410 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXRMRGSRALLNFP-LRINSGEPEPVRIK 631
            K YRGVRQR WGK+ AEIR P +N  R+WLGTF+T             ++RG  A LNFP L +N  EP PV  K
Sbjct:  185 KLYRGVRQRHWGKWVAEIRKP-RNRTRLWLGTFDTAEEAAMAYDREAFKLRGETARLNFPELFLNKQEPTPVHQK 258          
BLAST of CN189430 vs. ExPASy Swiss-Prot
Match: ERF83_ARATH (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.997e-11
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = -2
Query:  428 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXRMRGSRALLNFPLRINSGEP 625
            YRGVR+RPWG+FAAEIRDP K  +RVWLGTF++              +RG +A  NFP+  +   P
Sbjct:   27 YRGVRKRPWGRFAAEIRDPLKK-SRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNFPIDCSPSSP 91          
BLAST of CN189430 vs. ExPASy Swiss-Prot
Match: CRF3_ARATH (Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana GN=CRF3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.997e-11
Identity = 38/75 (50.67%), Postives = 44/75 (58.67%), Query Frame = -2
Query:  419 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXRMRGSRALLNFPL----RINSGEPEPV 631
            K +RGVRQRPWGK+AAEIRDP +   R+WLGTFET             R+RG  AL NF +         EPEPV
Sbjct:  123 KKFRGVRQRPWGKWAAEIRDPEQR-RRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNFSIPPQEEEEEEEPEPV 196          
BLAST of CN189430 vs. ExPASy Swiss-Prot
Match: ERF91_ARATH (Ethylene-responsive transcription factor ERF091 OS=Arabidopsis thaliana GN=ERF091 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11
Identity = 34/62 (54.84%), Postives = 41/62 (66.13%), Query Frame = -2
Query:  449 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXRMRGS-RALLNFPL 631
            + YRGVR+RPWGKFAAEIRD  +NG RVWLGTF+T             R+RG+ +A  NF L
Sbjct:  108 RKYRGVRKRPWGKFAAEIRDSTRNGVRVWLGTFQTAEEAAMAYDKAAVRIRGTQKAHTNFQL 169          
BLAST of CN189430 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11
Identity = 32/59 (54.24%), Postives = 38/59 (64.41%), Query Frame = -2
Query:  452 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXRMRGSRALLNFP 628
            HYRGVR+RPWG++AAEIRDP K   RVWLGTF+T              +RG +A  NFP
Sbjct:   11 HYRGVRKRPWGRYAAEIRDPWKK-TRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFP 68          
The following BLAST results are available for this feature:
BLAST of CN189430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
ERF53_ARATH4.102e-1150.67Ethylene-responsive transcription factor ERF053 OS... [more]
ERF83_ARATH6.997e-1148.48Ethylene-responsive transcription factor 7 OS=Arab... [more]
CRF3_ARATH6.997e-1150.67Ethylene-responsive transcription factor CRF3 OS=A... [more]
ERF91_ARATH9.139e-1154.84Ethylene-responsive transcription factor ERF091 OS... [more]
ERF81_ARATH9.139e-1154.24Ethylene-responsive transcription factor 12 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N13_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189430 ID=CN189430; Name=CN189430; organism=Citrus sinensis; type=EST; length=635bp
TTTTTTTTTTTTTTTTAACACACTAACTCTTTTATATTCACAATTCCCAC
TCTCTTTTTTTTTTTTTCTTTTTTTTTTTTGCAAACACCCTTCAAAGTAC
AAACAAACTTACAAATTACAAAATCACGTGCGGGGATGATCACCCCCCCG
GCCCAAGAAAAGAAGAAAAGAACTAGTAGATCTCTCGGATAAGATCGACT
TCGGAGTTTCTTCCACGTCAGCGTCAGTTTACCAATAGCTGGTCACCACG
TGTACAGGAGGCCACTCGCGCCACTTTTCCAACTCCACTTCCCATTTCCA
TCCCGGCTCGTACTGGCACCGACGCCAAGGCAGCCACCTTTCTCCTCCTC
TTGGGGGACACACTGCCACTATCCGTGGACGAAGACGGCTCCGGCGTGGA
CCGCTTCGACTTAATTCTGACCGGCTCGGGCTCACCCGAGTTGATCCTTA
GGGGAAAATTCAAAAGAGCCCTTGATCCCCTCATCCTGTAAGCGGCTCGG
TCATAAGCCAGAGCCGCATCCTCAGCCGTCTCGAAAGTCCCGAGCCAAAC
CCGAGCCCCATTCTTAGCCGGGTCACGTATTTCGGCCGCAAACTTCCCCC
AAGGTCTCTGCCTAACCCCCCTGTAATGCTTCCCC
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