EY676450

Overview
NameEY676450
Unique NameEY676450
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY676450 vs. ExPASy Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.717e-21
Identity = 60/144 (41.67%), Postives = 87/144 (60.42%), Query Frame = 1
Query:  193 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASFEEYIKLKEETGGPTALAKTIFWGKLGRLG*KEWEHLEKQRGSSLGQVRALKN 624
            MGRGK+ ++RI+N  +RQVTF+KRRNGLLKKA ELS+LCDAEV L++FSS G+LYEF SS +M   +++Y       L  N  +  E +    E   L+++        K +   +L  LG ++ + LE +   SL  +R  K+
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEF-SSTNMKTVIDRYTNAKEELLGGN--ATSEIKIWQREAASLRQQLHNLQESHKQLMGEELSGLGVRDLQGLENRLEISLRNIRMRKD 141          
BLAST of EY676450 vs. ExPASy Swiss-Prot
Match: AGL12_ARATH (Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 2.242e-21
Identity = 62/150 (41.33%), Postives = 85/150 (56.67%), Query Frame = 1
Query:  193 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYG-------TLQANHQSAKETQASFEEYIKLKEETGGPTALAKTIFWGKLGRLG*KEWEHLEKQRGSSLGQVRALK 621
            M RGK++LKRIEN ++RQVTF KRR GLLKKA ELSVLCDAE+ ++IFS +GKL+E  +  +M   ++KY +C+ G       T  A  Q         +E   LK+E          +F G  G +  +E   LEK     + Q+R+ K
Sbjct:    1 MARGKIQLKRIENPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQGKLFELATKGTMEGMIDKYMKCTGGGRGSSSATFTAQEQLQPPNLDPKDEINVLKQEIEMLQKGISYMFGGGDGAMNLEELLLLEKHLEYWISQIRSAK 150          
BLAST of EY676450 vs. ExPASy Swiss-Prot
Match: MAD29_ORYSJ (MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.824e-21
Identity = 63/160 (39.38%), Postives = 93/160 (58.13%), Query Frame = 1
Query:  193 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS-SPSMHKTLEKYERCSYGTLQANHQSAKETQASFEEYIKLKEETGGPTALAKTIFWGKLGRLG*KEWEHLEKQRGSSLGQVRALKNPESLGKAF*NFKGRE 669
            MGRGK+E+KRIEN  NRQVTF+KRR GLLKKA EL+VLCDA V ++IFSS GK++E+CS + S+ + +E Y+  +      + +     Q  F E  +++ E        +      L  L   +   LE+Q   S+ +VRA K+ + L +   N + +E
Sbjct:    1 MGRGKIEIKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPTCSLRELIEHYQTVT----NTHFEEINHDQQIFVEMTRMRNEMEKLDGGIRRFTGDDLSNLTLADINDLEQQLEFSVTKVRARKH-QLLNQQLDNLRRKE 155          
BLAST of EY676450 vs. ExPASy Swiss-Prot
Match: AGL15_ARATH (Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.824e-21
Identity = 68/145 (46.90%), Postives = 89/145 (61.38%), Query Frame = 1
Query:  193 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASFE--EYIKLKEETGGPTALAKTIFWGKLGRLG*KEWEHLEKQRGSSLGQVRALK 621
            MGRGK+E+KRIEN  +RQVTF+KRR+GLLKKA ELSVLCDAEVA+I+FS  GKL+E+ SS  M +TL +Y          NHQS+  ++A  +  E   LK++          +    L  L  KE + LE+Q   +L  VR  K
Sbjct:    1 MGRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEY-SSTGMKQTLSRY---------GNHQSSSASKAEEDCAEVDILKDQLSKLQEKHLQLQGKGLNPLTFKELQSLEQQLYHALITVRERK 135          
BLAST of EY676450 vs. ExPASy Swiss-Prot
Match: MAD20_ORYSJ (MADS-box transcription factor 20 OS=Oryza sativa subsp. japonica GN=MADS20 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 4.995e-21
Identity = 60/147 (40.82%), Postives = 92/147 (62.59%), Query Frame = 1
Query:  193 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS-PSMHKTLEKYER---CSYGTLQANHQSAKETQASFEEYIKLKEETGGPTALAKTIFWGKLGRLG*KEWEHLEKQRGSSLGQVRALK 621
            MGRGKV+++RIEN+++RQVTF+KRR GLLKKA+E++VLCD +VA I+FS++G L+ + SS  +M + LEKY+R    S G          E   S+ ++IKL+          + +   +L  L  ++ + LE Q  +SL  +R+ K
Sbjct:    1 MGRGKVQVRRIENEVSRQVTFSKRRPGLLKKAHEIAVLCDVDVAAIVFSAKGNLFHYASSHTTMERILEKYDRHELLSEGNNVIEEFPELEGSMSY-DHIKLRGRIEALKKSQRNLMGQELDSLTLQDIQQLENQIDTSLNNIRSRK 146          
BLAST of EY676450 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.453e-20
Identity = 58/144 (40.28%), Postives = 88/144 (61.11%), Query Frame = 1
Query:  193 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASFEEYIKLKEETGGPTALAKTIFWGKLGRLG*KEWEHLEKQRGSSLGQVRALKN 624
            MGRGK+E+KRI+N  +RQVTF+KRR+GL KKA ELS+LCDAEV L++FSS  +LY+F SS SM   +E+Y        Q  + S+ E +   +E   L+++        + +   +L  L  ++ ++LE +   SL  +R  K+
Sbjct:    1 MGRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASS-SMKSIIERYNETKEDPHQTMNASS-EAKLWQQEAASLRQQLHNLQEYHRQLLGQQLSGLDVEDLQNLESKLEMSLKNIRLRKD 142          
BLAST of EY676450 vs. ExPASy Swiss-Prot
Match: MAD33_ORYSJ (MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica GN=MADS33 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 3.238e-20
Identity = 59/143 (41.26%), Postives = 86/143 (60.14%), Query Frame = 1
Query:  193 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASFEEYIKLKEETGGPTALAKTIFWGKLGRLG*KEWEHLEKQRGSSLGQVRALK 621
            M RGKV+++RIEN ++RQVTF KRR GLLKKA ELSVLCDA+V +IIFSS+GKL+E  ++ +MH  +E+Y+    G  Q    + +  Q + +    L+EE        ++ + G  G +   +   LEK     + Q+R  K
Sbjct:    1 MVRGKVQMRRIENPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHELATNGNMHNLVERYQSNVAGG-QMEPGALQRQQVAEQGIFLLREEIDLLQRGLRSTYGGGAGEMTLDKLHALEKGLELWIYQIRTTK 142          
BLAST of EY676450 vs. ExPASy Swiss-Prot
Match: FLC_ARATH (MADS-box protein FLOWERING LOCUS C OS=Arabidopsis thaliana GN=FLC PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.238e-20
Identity = 70/163 (42.94%), Postives = 98/163 (60.12%), Query Frame = 1
Query:  193 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQA-NHQSAKETQASFEEYIKLKEETGGPTALAKTIFWGKLGRLG*KEWEHLEKQRGSSLGQVRALKNPESLGKAF*NFKGREKWL 678
            MGR K+E+KRIENK +RQVTF+KRRNGL++KA +LSVLCDA VAL++ S+ GKLY F S  ++ K L++Y +     L+A +HQS      S  E ++L +     + + K +    L +L     EHLE    ++L   RA K  E + K   N K +EK L
Sbjct:    1 MGRKKLEIKRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSSGDNLVKILDRYGKQHADDLKALDHQSKALNYGSHYELLELVDSKLVGSNV-KNVSIDALVQLE----EHLE----TALSVTRA-KKTELMLKLVENLKEKEKML 153          
BLAST of EY676450 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 4.228e-20
Identity = 61/144 (42.36%), Postives = 85/144 (59.03%), Query Frame = 1
Query:  193 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASFEEYIKLKEETGGPTALAKTIFWGKLGRLG*KEWEHLEKQRGSSLGQVRALKN 624
            MGRGK+ ++RI+N  +RQVTF+KRRNG+ KKA EL++LCDAEV L+IFSS G+LYE+ SS SM   +++Y + S    QA      E +    E   L+++        + +    L  L  KE + LE Q   SL  VR  K+
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEY-SSTSMKSVIDRYGK-SKDEQQAVANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLEISLRSVRTKKD 142          
BLAST of EY676450 vs. ExPASy Swiss-Prot
Match: TT16_ARATH (Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.230e-19
Identity = 58/145 (40.00%), Postives = 84/145 (57.93%), Query Frame = 1
Query:  193 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPS-MHKTLEKYERCSYGTLQANHQSAKETQASFEEYIKLKEETGGPTALAKTIFWGKLGRLG*KEWEHLEKQRGSSLGQVRALKN 624
            MGRGK+E+K+IEN+  RQVTF+KRR GL+KK  ELS+LCDA + LI+FS+ GKL EFCS  + M + +++Y   +   L  +H   ++     E    L+ ET       +      L  +   E + LE+Q   S+ +VR  KN
Sbjct:    1 MGRGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSEQNRMPQLIDRYLHTNGLRLPDHHDDQEQLHHEME---LLRRETCNLELRLRPFHGHDLASIPPNELDGLERQLEHSVLKVRERKN 142          
The following BLAST results are available for this feature:
BLAST of EY676450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
MAD57_ORYSJ1.717e-2141.67MADS-box transcription factor 57 OS=Oryza sativa s... [more]
AGL12_ARATH2.242e-2141.33Agamous-like MADS-box protein AGL12 OS=Arabidopsis... [more]
MAD29_ORYSJ3.824e-2139.38MADS-box transcription factor 29 OS=Oryza sativa s... [more]
AGL15_ARATH3.824e-2146.90Agamous-like MADS-box protein AGL15 OS=Arabidopsis... [more]
MAD20_ORYSJ4.995e-2140.82MADS-box transcription factor 20 OS=Oryza sativa s... [more]
MAD23_ORYSJ1.453e-2040.28MADS-box transcription factor 23 OS=Oryza sativa s... [more]
MAD33_ORYSJ3.238e-2041.26MADS-box transcription factor 33 OS=Oryza sativa s... [more]
FLC_ARATH3.238e-2042.94MADS-box protein FLOWERING LOCUS C OS=Arabidopsis ... [more]
MAD27_ORYSJ4.228e-2042.36MADS-box transcription factor 27 OS=Oryza sativa s... [more]
TT16_ARATH1.230e-1940.00Protein TRANSPARENT TESTA 16 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-022-G10-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676450 ID=EY676450; Name=EY676450; organism=Citrus sinensis; type=EST; length=944bp
CCACGCGTCCGGGAGTGTTCTATACTAACTCTTAAACCTAGCTATCAAAG
CAACCTGATCCCAGCTTCTTGCCCTAAACAACAAGATCTGCAGAAACAAA
ATCTACTAATTTATAATTTATTTTTTAGCCTAAAGAAACCCAAAAAAAAC
AAAAAATCATCCAGCTATCCAGCACTTGTAAGTATATTAATAATGGGAAG
GGGAAAAGTAGAGCTGAAGAGGATAGAGAACAAAATAAATCGACAGGTGA
CTTTTGCAAAGAGAAGGAATGGATTGTTAAAGAAAGCTTATGAGCTCTCA
GTTTTGTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTAGCCGCGGGAA
GCTCTATGAATTCTGCAGCAGCCCTAGTATGCACAAGACACTTGAGAAGT
ATGAAAGGTGTAGTTATGGAACACTGCAAGCGAATCATCAATCAGCCAAA
GAGACGCAGGCCAGCTTCGAGGAATACATAAAACTCAAAGAAGAAACTGG
AGGCCCTACAGCACTTGCAAAGACAATTTTTTGGGGAAAATTGGGACGCT
TAGGCTAAAAGGAGTGGGAGCACCTTGAAAAACAGCGGGGAAGTTCCTTG
GGGCAAGTAAGGGCCCTCAAGAACCCGGAATCACTGGGAAAAGCTTTCTG
AAACTTCAAAGGAAGGGAGAAATGGTTGGGGGGGACCCAAAACATTTTTA
AGGTGGAGGTTGGGGGGAGAATTAAAGGGAGCTGGGGAAATTAACTCCCG
GGGGGGGAGGGTGAGGAAAAAAAAAAGATAACAAAAAAGGACACCCACAC
CGGGGGGCTCTTTGGGAGAGGGGGTTGTATTGGGGCCTTTTTATACGGAA
GAGAGGGGGGAAAAAGTGGAAAGTTTCGGGGGCAAAGAAACCCGGGGGAG
GGGAAAACGAGGAACAAGAGGGAGGGGGGGGCGGGTGGGGGCAC
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