EY676450

Overview
NameEY676450
Unique NameEY676450
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY676450 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.376e-17
Identity = 56/144 (38.89%), Postives = 84/144 (58.33%), Query Frame = 1
Query:  193 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTL-EKYERCSYGTLQANHQSAKETQASFEEYIKLKEETGGPTALAKTIFWGKLGRLG*KEWEHLEKQRGSSLGQVRALK 621
            M RGK+++KRIEN+ NRQVT++KRRNGL KKA+ELSVLCDA+V++I+ SS  KL+E+ S  +  K L ++Y++     L ++H    +     E   KL E         +      L  LG ++  +L +   +SL  +R  K
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISPTTATKQLFDQYQKAVGVDLWSSHYEKMQ-----EHLKKLNEVNRNLRREIRQRMGESLNDLGYEQIVNLIEDMDNSLKLIRERK 139          
BLAST of EY676450 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.715e-17
Identity = 48/106 (45.28%), Postives = 68/106 (64.15%), Query Frame = 1
Query:  193 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTL-EKYERCS--------YGTLQANHQSAKETQASFEEYIK 483
            M RGK+++KRIEN+ NRQVT++KRRNGL KKA+EL+VLCDA V++I+FSS  KL+E+ S  +  K + + Y+  S        Y  +Q   +   ET  +    IK
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLYQTISDVDVWATQYERMQETKRKLLETNRNLRTQIK 106          
BLAST of EY676450 vs. ExPASy Swiss-Prot
Match: MAD32_ORYSJ (MADS-box transcription factor 32 OS=Oryza sativa subsp. japonica GN=MADS32 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.273e-16
Identity = 44/91 (48.35%), Postives = 64/91 (70.33%), Query Frame = 1
Query:  193 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS--PSMHKTLEKYERCSYGTLQANHQSAKETQ 459
            MGRG+ E+KRIEN   RQ TF KRR+GL KKA EL+VLCDA++ L++FS+ GKLY F S   PS+ + +E+YE  ++  + A+ +  +  +
Sbjct:    1 MGRGRSEIKRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYHFLSPTVPSVREFVERYEATTHTKVWADIRQERRAE 91          
BLAST of EY676450 vs. ExPASy Swiss-Prot
Match: CMB2_DIACA (MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.663e-16
Identity = 41/73 (56.16%), Postives = 60/73 (82.19%), Query Frame = 1
Query:  193 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS-SPSMHKTLEKYER 408
            MGRGK+E+++IENK NRQVTF+KRRNG++KKA EL+VLCDA+V+L++ SS  KL+ + S   S+ K  ++Y++
Sbjct:    1 MGRGKLEIRKIENKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSPGVSLKKMYDEYQK 73          
BLAST of EY676450 vs. ExPASy Swiss-Prot
Match: MEF2C_PIG (Myocyte-specific enhancer factor 2C OS=Sus scrofa GN=MEF2C PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.836e-16
Identity = 48/103 (46.60%), Postives = 64/103 (62.14%), Query Frame = 1
Query:  193 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASFEEYIKLKEETG 501
            MGR K+++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF+S  KL+++ S+  M K L KY        + N      T +   E +  KE  G
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYAST-DMDKVLLKY-------TEYNEPHESRTNSDIVEALNKKENKG 95          
BLAST of EY676450 vs. ExPASy Swiss-Prot
Match: MEF2A_RAT (Myocyte-specific enhancer factor 2A OS=Rattus norvegicus GN=Mef2a PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.836e-16
Identity = 48/103 (46.60%), Postives = 64/103 (62.14%), Query Frame = 1
Query:  193 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASFEEYIKLKEETG 501
            MGR K+++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF+S  KL+++ S+  M K L KY        + N      T +   E +  KE  G
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST-DMDKVLLKY-------TEYNEPHESRTNSDIVEALNKKEHRG 95          
BLAST of EY676450 vs. ExPASy Swiss-Prot
Match: MEF2A_HUMAN (Myocyte-specific enhancer factor 2A OS=Homo sapiens GN=MEF2A PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.836e-16
Identity = 48/103 (46.60%), Postives = 64/103 (62.14%), Query Frame = 1
Query:  193 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASFEEYIKLKEETG 501
            MGR K+++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF+S  KL+++ S+  M K L KY        + N      T +   E +  KE  G
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST-DMDKVLLKY-------TEYNEPHESRTNSDIVEALNKKEHRG 95          
BLAST of EY676450 vs. ExPASy Swiss-Prot
Match: MEF2A_BOVIN (Myocyte-specific enhancer factor 2A OS=Bos taurus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.836e-16
Identity = 48/103 (46.60%), Postives = 64/103 (62.14%), Query Frame = 1
Query:  193 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASFEEYIKLKEETG 501
            MGR K+++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF+S  KL+++ S+  M K L KY        + N      T +   E +  KE  G
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST-DMDKVLLKY-------TEYNEPHESRTNSDIVEALNKKEHRG 95          
BLAST of EY676450 vs. ExPASy Swiss-Prot
Match: MEF2A_PIG (Myocyte-specific enhancer factor 2A OS=Sus scrofa GN=MEF2A PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.838e-16
Identity = 48/103 (46.60%), Postives = 64/103 (62.14%), Query Frame = 1
Query:  193 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASFEEYIKLKEETG 501
            MGR K+++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF+S  KL+++ S+  M K L KY        + N      T +   E +  KE  G
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST-DMDKVLLKY-------TEYNEPHESGTNSDIVEALNKKEHRG 95          
BLAST of EY676450 vs. ExPASy Swiss-Prot
Match: MEF2_DROME (Myocyte-specific enhancer factor 2 OS=Drosophila melanogaster GN=Mef2 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 1.078e-15
Identity = 42/70 (60.00%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  193 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKY 402
            MGR K+++ RI ++ NRQVTF KR+ G++KKAYELSVLCD E+ALIIFSS  KLY++ S+  M + L KY
Sbjct:    1 MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYAST-DMDRVLLKY 69          
The following BLAST results are available for this feature:
BLAST of EY676450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
DEFA_ANTMA4.376e-1738.89Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
AP3_ARATH5.715e-1745.28Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]
MAD32_ORYSJ1.273e-1648.35MADS-box transcription factor 32 OS=Oryza sativa s... [more]
CMB2_DIACA1.663e-1656.16MADS-box protein CMB2 OS=Dianthus caryophyllus GN=... [more]
MEF2C_PIG2.836e-1646.60Myocyte-specific enhancer factor 2C OS=Sus scrofa ... [more]
MEF2A_RAT2.836e-1646.60Myocyte-specific enhancer factor 2A OS=Rattus norv... [more]
MEF2A_HUMAN2.836e-1646.60Myocyte-specific enhancer factor 2A OS=Homo sapien... [more]
MEF2A_BOVIN2.836e-1646.60Myocyte-specific enhancer factor 2A OS=Bos taurus ... [more]
MEF2A_PIG4.838e-1646.60Myocyte-specific enhancer factor 2A OS=Sus scrofa ... [more]
MEF2_DROME1.078e-1560.00Myocyte-specific enhancer factor 2 OS=Drosophila m... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-022-G10-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676450 ID=EY676450; Name=EY676450; organism=Citrus sinensis; type=EST; length=944bp
CCACGCGTCCGGGAGTGTTCTATACTAACTCTTAAACCTAGCTATCAAAG
CAACCTGATCCCAGCTTCTTGCCCTAAACAACAAGATCTGCAGAAACAAA
ATCTACTAATTTATAATTTATTTTTTAGCCTAAAGAAACCCAAAAAAAAC
AAAAAATCATCCAGCTATCCAGCACTTGTAAGTATATTAATAATGGGAAG
GGGAAAAGTAGAGCTGAAGAGGATAGAGAACAAAATAAATCGACAGGTGA
CTTTTGCAAAGAGAAGGAATGGATTGTTAAAGAAAGCTTATGAGCTCTCA
GTTTTGTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTAGCCGCGGGAA
GCTCTATGAATTCTGCAGCAGCCCTAGTATGCACAAGACACTTGAGAAGT
ATGAAAGGTGTAGTTATGGAACACTGCAAGCGAATCATCAATCAGCCAAA
GAGACGCAGGCCAGCTTCGAGGAATACATAAAACTCAAAGAAGAAACTGG
AGGCCCTACAGCACTTGCAAAGACAATTTTTTGGGGAAAATTGGGACGCT
TAGGCTAAAAGGAGTGGGAGCACCTTGAAAAACAGCGGGGAAGTTCCTTG
GGGCAAGTAAGGGCCCTCAAGAACCCGGAATCACTGGGAAAAGCTTTCTG
AAACTTCAAAGGAAGGGAGAAATGGTTGGGGGGGACCCAAAACATTTTTA
AGGTGGAGGTTGGGGGGAGAATTAAAGGGAGCTGGGGAAATTAACTCCCG
GGGGGGGAGGGTGAGGAAAAAAAAAAGATAACAAAAAAGGACACCCACAC
CGGGGGGCTCTTTGGGAGAGGGGGTTGTATTGGGGCCTTTTTATACGGAA
GAGAGGGGGGAAAAAGTGGAAAGTTTCGGGGGCAAAGAAACCCGGGGGAG
GGGAAAACGAGGAACAAGAGGGAGGGGGGGGCGGGTGGGGGCAC
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