CN189428

Overview
NameCN189428
Unique NameCN189428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189428_ssr155 microsatellite CN189428_ssr155:155..166. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:20..630. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189428 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.918e-27
Identity = 57/92 (61.96%), Postives = 68/92 (73.91%), Query Frame = -2
Query:  222 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 497
            A+TCGQV++++ PC+ + R  G  P   CCSGVRSLN AARTT DR+AACNCLK A   IRG+    AA +PS+CGV IPY IS STDCSRV
Sbjct:   30 AVTCGQVSSAIGPCLSYARGQGSGPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          
BLAST of CN189428 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.918e-27
Identity = 59/97 (60.82%), Postives = 71/97 (73.20%), Query Frame = -2
Query:  219 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 509
            P   A+TCGQVTA LAPC+P+L+  GR P   CC GV++L G+A+TT DR+ AC CLK A   I+GI  N AAG+PS C V IPYKISPSTDCS V+
Sbjct:   20 PHAEALTCGQVTAGLAPCLPYLQ--GRGPLGGCCGGVKNLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CN189428 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.810e-27
Identity = 59/97 (60.82%), Postives = 70/97 (72.16%), Query Frame = -2
Query:  219 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 509
            P   A+TCGQVTA LAPC+P+L+  GR P   CC GV+ L G+A+TT DR+ AC CLK A   I+GI  N AAG+PS C V IPYKISPSTDCS V+
Sbjct:   20 PHAEALTCGQVTAGLAPCLPYLQ--GRGPLGGCCGGVKGLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CN189428 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.500e-27
Identity = 57/92 (61.96%), Postives = 67/92 (72.83%), Query Frame = -2
Query:  222 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 497
            AI+CGQV +++APCI + R  G  P   CCSGVRSLN AARTT DR+AACNCLK A   + G+    AA +PS+CGV IPY IS STDCSRV
Sbjct:   28 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119          
BLAST of CN189428 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.500e-27
Identity = 58/94 (61.70%), Postives = 71/94 (75.53%), Query Frame = -2
Query:  219 AITCGQVTASLAPCIPFLR-TGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 497
            A+T GQVT SLAPCI +LR +G    PP CC+G++SLN AA+TTP RQAAC C+K A   I GI   +A+GLP +CGV IPYKISPSTDC+ V+
Sbjct:   27 AVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          
BLAST of CN189428 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.500e-27
Identity = 58/94 (61.70%), Postives = 71/94 (75.53%), Query Frame = -2
Query:  219 AITCGQVTASLAPCIPFLR-TGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 497
            A+T GQVT SLAPCI +LR +G    PP CC+G++SLN AA+TTP RQAAC C+K A   I GI   +A+GLP +CGV IPYKISPSTDC+ V+
Sbjct:   23 AVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
BLAST of CN189428 vs. ExPASy Swiss-Prot
Match: NLTP1_LENCU (Non-specific lipid-transfer protein 1 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.470e-26
Identity = 54/93 (58.06%), Postives = 70/93 (75.27%), Query Frame = -2
Query:  219 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 497
            AI+CG V+ +L PC+ +L+ GG  P P CC GV+ LNGAARTT DR+AACNCLK + G+I G+KP   A LP +CGVR+PY IS ST+C+ +R
Sbjct:   26 AISCGTVSGALVPCLTYLK-GGPGPSPQCCGGVKRLNGAARTTIDRRAACNCLKSSAGSISGLKPGNVATLPGKCGVRLPYTISTSTNCNTIR 117          
BLAST of CN189428 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.213e-26
Identity = 56/93 (60.22%), Postives = 68/93 (73.12%), Query Frame = -2
Query:  219 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 497
            AI+CG VT+ L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A G+I  +  N AA LP +CGV IPYKIS ST+C+ V+
Sbjct:   18 AISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 109          
BLAST of CN189428 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.186e-26
Identity = 56/93 (60.22%), Postives = 68/93 (73.12%), Query Frame = -2
Query:  219 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 497
            AI+CG VT+ L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A G+I  +  N AA LP +CGV IPYKIS ST+C+ V+
Sbjct:   26 AISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          
BLAST of CN189428 vs. ExPASy Swiss-Prot
Match: NLTP4_ORYSJ (Non-specific lipid-transfer protein 4 OS=Oryza sativa subsp. japonica GN=Os12g0114500 PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 7.186e-26
Identity = 53/96 (55.21%), Postives = 66/96 (68.75%), Query Frame = -2
Query:  222 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 509
            P  +A+TCGQV + LAPCI +       P   CC GVR+LN AA TT DRQ  C CLK+    + G++P++ AG+PS+CGV IPY ISPSTDCSRV
Sbjct:   23 PAASAVTCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118          
The following BLAST results are available for this feature:
BLAST of CN189428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
NLTP2_SORBI2.918e-2761.96Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]
NLTP1_SOLLC2.918e-2760.82Non-specific lipid-transfer protein 1 OS=Solanum l... [more]
NLTP1_SOLPN3.810e-2760.82Non-specific lipid-transfer protein 1 OS=Solanum p... [more]
NLTP_MAIZE6.500e-2761.96Non-specific lipid-transfer protein OS=Zea mays PE... [more]
NLTP2_GOSHI6.500e-2761.70Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_GOSHI6.500e-2761.70Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_LENCU2.470e-2658.06Non-specific lipid-transfer protein 1 OS=Lens culi... [more]
NLTP4_LENCU4.213e-2660.22Non-specific lipid-transfer protein 4 (Fragment) O... [more]
NLTP6_LENCU7.186e-2660.22Non-specific lipid-transfer protein 6 OS=Lens culi... [more]
NLTP4_ORYSJ7.186e-2655.21Non-specific lipid-transfer protein 4 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N12_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189428 ID=CN189428; Name=CN189428; organism=Citrus sinensis; type=EST; length=612bp
TTTTATACCAAAAATAACTATAATTAATCACTCAAAACACAGATCGCGTT
TACATATTTAATATGACATAAAAAGCAAATATACAAACATGACATGAGAG
TGAAACTCATACAAGTGGAGACTCGTTCGGACAAAGAAATTAACATAGAT
ATTCTTTATTTATTTATTCTTCTCAGTCAATCATACTTGGAAAGTCACAG
AGCTCAAACTCAACTTCACCTGACCCTAGAGCAGTCGGTGCTGGGGCTGA
TCTTGTAAGGAATTCTGACTCCACATTGACTAGGAAGGCCAGCGGCAACA
TTAGGTTTGATGCCGCGGATTGTTCCGTAAGCTCGTTTCAAGCAGTTGCA
TGCAGCTTGGCGGTCAGGGGTGGTTCTGGCGGCGCCGTTGAGAGACCTGA
CGCCGCTACAGCATGGCGGTGGAGGAAAACGCCCTCCAGTTCTCAAGAAA
GGGATGCATGGAGCCAAGGAGGCTGTCACCTGCCCGCATGTTATGGCATT
AGTCACCGGGGCAGTCACCAGAATGCACAAAAGCAAAGCACAAACAAGCT
TAAGAGCAGCCATGAGGATTCTTCAGGGAGGCTTTTGCTTGGTTATAGCT
AGTTATCAGCCT
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