CN189426

Overview
NameCN189426
Unique NameCN189426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6312 contig Csv1_Contig6312:627..1299. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189426 vs. ExPASy Swiss-Prot
Match: RLA0_LEIIN (60S acidic ribosomal protein P0 OS=Leishmania infantum GN=LIPO-A PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.795e-19
Identity = 51/120 (42.50%), Postives = 76/120 (63.33%), Query Frame = -1
Query:  315 NIPTKIYKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQ 674
            NI TKI KG VEI+T  +++  GDKV +S A LL KL I PF Y + V SV++ G +++ E L ++ED + +     +S V A+AL    PT +    M V+A+KN++AV++AT Y F +
Sbjct:  149 NIATKIAKGMVEIVTEKKVLSVGDKVDNSTATLLQKLNISPFYYQVNVLSVWDRGVLFTREDLMMTEDMVEKMLMEGLSNVAAMALGAGIPTSSTIGPMLVDAFKNLLAVSVATSYEFEE 268          
BLAST of CN189426 vs. ExPASy Swiss-Prot
Match: RLA0_LEICH (60S acidic ribosomal protein P0 OS=Leishmania chagasi GN=LCP0 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.795e-19
Identity = 51/120 (42.50%), Postives = 76/120 (63.33%), Query Frame = -1
Query:  315 NIPTKIYKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQ 674
            NI TKI KG VEI+T  +++  GDKV +S A LL KL I PF Y + V SV++ G +++ E L ++ED + +     +S V A+AL    PT +    M V+A+KN++AV++AT Y F +
Sbjct:  148 NIATKIAKGMVEIVTEKKVLSVGDKVDNSTATLLQKLNISPFYYQVNVLSVWDRGVLFTREDLMMTEDMVEKMLMEGLSNVAAMALGAGIPTSSTIGPMLVDAFKNLLAVSVATSYEFEE 267          
BLAST of CN189426 vs. ExPASy Swiss-Prot
Match: RLA0_METJA (Acidic ribosomal protein P0 homolog OS=Methanocaldococcus jannaschii GN=rplP0 PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.172e-12
Identity = 42/128 (32.81%), Postives = 68/128 (53.12%), Query Frame = -1
Query:  288 IPTKIYKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLA 671
            IP  I KG + I     +++KG+ V    AA+L +LGI+P   GL + +VYE+G +Y+P+VL + E+ L+    ++      LA   +YP     P +   A+ N  A AL+ E +F   +   + LA
Sbjct:  149 IPAAIEKGKIAIKEDKVVVKKGEVVSPKLAAVLDRLGIKPIKVGLNILAVYEDGIIYTPDVLKVDEEKLLADIQAAYQNAFNLAFNTAYPAKEVLPFLIQKAFIN--ARALSVETAFVTKETAGDILA 274          
BLAST of CN189426 vs. ExPASy Swiss-Prot
Match: RLA0_METVO (Acidic ribosomal protein P0 homolog (Fragment) OS=Methanococcus voltae GN=rplP0 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.056e-11
Identity = 38/111 (34.23%), Postives = 60/111 (54.05%), Query Frame = -1
Query:  339 IPTKIYKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVAL 671
            +P  I KG + I     + ++GD V +  A +L+KL I+P   GL V  VYE+G VY PE+L + ED+ + K  S+ +    L++    PT A    +   A+ N  AV++
Sbjct:  150 LPAAIEKGKIGIKEDTIVAKEGDVVSAKLAVVLSKLDIKPMEVGLNVLGVYEDGIVYDPEILKIDEDEFLAKLQSAYTGAFNLSVNAVIPTSATIETIVQKAFSNAKAVSI 260          
BLAST of CN189426 vs. ExPASy Swiss-Prot
Match: RLA0_PYRHO (Acidic ribosomal protein P0 homolog OS=Pyrococcus horikoshii GN=rplP0 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.507e-11
Identity = 38/115 (33.04%), Postives = 60/115 (52.17%), Query Frame = -1
Query:  327 IPTKIYKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 671
            IP +I KG V I     +++ G+ +    A +L  LGI+P   GL V +VYE+G VY+P+VL + E + ++    +      LA+ I+YPT      +   A+ N   VA+   Y
Sbjct:  145 IPARIEKGKVTIQKDTTVLKAGEVITPELANILNALGIQPLEVGLDVLAVYEDGIVYTPDVLAIDEQEYIDMLQKAYMHAFNLAVNIAYPTPETIEAIIQKAFLNAKTVAIEAGY 259          
BLAST of CN189426 vs. ExPASy Swiss-Prot
Match: RLA0_PYRAB (Acidic ribosomal protein P0 homolog OS=Pyrococcus abyssi GN=rplP0 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.580e-11
Identity = 38/115 (33.04%), Postives = 61/115 (53.04%), Query Frame = -1
Query:  327 IPTKIYKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 671
            IP +I +G V I     +++ G+ +    A +L  LGI+P   GL V +VYE+G VY+P+VL + E + ++    +      LA+ I+YPT      +   A+ N  AVA+   Y
Sbjct:  145 IPARIERGKVTIQKDTTVLKAGEVITPELANILNALGIQPLEVGLDVLAVYEDGIVYTPDVLAIDEQEYIDMVQKAYMHAFNLAVNIAYPTPETIEAIIQKAFLNAKAVAVEAGY 259          
The following BLAST results are available for this feature:
BLAST of CN189426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RLA0_LEIIN7.795e-1942.5060S acidic ribosomal protein P0 OS=Leishmania infa... [more]
RLA0_LEICH7.795e-1942.5060S acidic ribosomal protein P0 OS=Leishmania chag... [more]
RLA0_METJA3.172e-1232.81Acidic ribosomal protein P0 homolog OS=Methanocald... [more]
RLA0_METVO2.056e-1134.23Acidic ribosomal protein P0 homolog (Fragment) OS=... [more]
RLA0_PYRHO3.507e-1133.04Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]
RLA0_PYRAB4.580e-1133.04Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N11_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189426 ID=CN189426; Name=CN189426; organism=Citrus sinensis; type=EST; length=674bp
TTTTTTGTAGGGACGAATATTATTGTCCTAAATAAAGGATTATATAAAAT
AAAAAGGAAACTGAGTCTACAAAAAGCATTAAGAAAATAAAGCAAACATA
ACCATAAACGTCAAAATCCTAAGTTATAGCACAAATGACAGTGCACTTAG
TCGAACAAGCTGAAGCCCATATCTTCATCAGACTCCTCAGCAGGCTCTTC
CTTCTTCTCTTCCTCCTTTGCAGCAGCAGCTGGGGCATCACCACCGCCAG
CAACCGGGGCAGCAGCAACAGCAAACTTGCTTGGGTCCGCCAGGTACTCC
TTCACTTTGTCGGCCTGAGGGAATGAATACTCAGTTGCAAGAGCAACAGC
AACCACATTCTTGTATGCATTGACGAACATGTGTGGAGCAGCTGCCAGGG
TCGGGTATGAGATGGCAAGTGCCAGAGCGGTGACCATTGATACACTTGAG
GCGAACTTCTCCACTAGGTCATCTTCAGACAGGTCAAGGACCTCTGGGCT
GTAGACGGAACCGTTTTCATAGACAGACTGGACAACAAGACCATAAGAGA
AGGGTCTAATCCCAAGCTTTGCAAGCAGGGCTGCCTCAGAAGATCCCACC
TTGTCACCCTTCCTAATAAGCTCCACAGGTGTGATAATTTCAACAGTACC
CTTGTATATCTTGGTGGGGATGTT
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