CN189422

Overview
NameCN189422
Unique NameCN189422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y5413_PSEA8 (UPF0061 protein PLES_54131 OS=Pseudomonas aeruginosa (strain LESB58) GN=PLES_54131 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.557e-23
Identity = 65/165 (39.39%), Postives = 95/165 (57.58%), Query Frame = -3
Query:  259 FMDEYQA----IMTKKLGL---PKYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 732
            F+  YQA    +M ++LGL    + ++ ++ +LL  M    VDY+ FFR L         PE   L  L+   +D     +EA+  W  +Y + +   G   E R+  M++VNP YVLRNYL Q AI+AAE GD+ EVR L +++ RP++EQPGME++ R PP W
Sbjct:  323 FLPLYQAHYLDLMRRRLGLGVAAENDQALVQELLQRMQGSAVDYSLFFRRLGE-----ETPE-RALASLRDDFVD-----REAFDRWAEAYRRRVEEEGGDQESRRRRMHAVNPLYVLRNYLAQQAIEAAEQGDYTEVRLLHQVLSRPFEEQPGMERFTRRPPDW 476          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y5023_PSEAE (UPF0061 protein PA5023 OS=Pseudomonas aeruginosa GN=PA5023 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.460e-22
Identity = 65/165 (39.39%), Postives = 94/165 (56.97%), Query Frame = -3
Query:  259 FMDEYQA----IMTKKLGL---PKYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 732
            F+  YQA    +M ++LGL    + +  ++ +LL  M    VDY+ FFR L         PE   L  L+   +D     +EA+  W  +Y + +   G   E R+  M++VNP YVLRNYL Q AI+AAE GD+ EVR L +++ RP++EQPGME++ R PP W
Sbjct:  323 FLPLYQAHYLDLMRRRLGLGVAAENDHALVQELLQRMQGSAVDYSLFFRRLGE-----ETPE-RALASLRDDFVD-----REAFDRWAEAYRRRVEEEGGDQESRRRRMHAVNPLYVLRNYLAQQAIEAAEQGDYTEVRLLHQVLSRPFEEQPGMERFTRRPPDW 476          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y494_PSEU2 (UPF0061 protein Psyr_0494 OS=Pseudomonas syringae pv. syringae (strain B728a) GN=Psyr_0494 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.252e-22
Identity = 66/166 (39.76%), Postives = 99/166 (59.64%), Query Frame = -3
Query:  259 FMDEYQA----IMTKKLGLP---KYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQEL-LSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 732
            F+  YQA    +M ++LGL    + ++Q++S+LL  M    VDYT FFR L +       P  E L  L+   +DI     + +  W  +Y   + L +  +++ER+  M++VNP Y+LRNYL Q+AI AAE GD+ EVRRL +++  P+ EQPGM+ YA+ PP W
Sbjct:  323 FLPLYQAHYLDLMRRRLGLTVAHEQDEQLVSQLLKLMQNSGVDYTLFFRRLGDQ------PAAEALRTLRDDFVDI-----KGFDGWAQAYQARIALENNGTEQERQTRMHAVNPLYILRNYLAQNAIAAAEKGDYAEVRRLHQVLCTPFTEQPGMQGYAQRPPDW 477          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y5760_PSEA7 (UPF0061 protein PSPA7_5760 OS=Pseudomonas aeruginosa (strain PA7) GN=PSPA7_5760 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.247e-22
Identity = 65/165 (39.39%), Postives = 96/165 (58.18%), Query Frame = -3
Query:  259 FMDEYQA----IMTKKLGLP---KYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 732
            F+  YQA    +M ++LGL    + ++ ++ +LL  M    VDY+ FFR L         PE + L  L+   +D     +EA+  W  +Y + + + G     R+  M++VNP YVLRNYL Q AI+AAE GD+ EVR L +L+ RP++EQPGME++ R PP W
Sbjct:  323 FLPLYQAHYLDLMRRRLGLGVAVENDQALVQELLQRMQGSAVDYSLFFRRLGE-----DAPE-QALARLRDDFVD-----REAFDRWGEAYRRRVEAEGGEQAARRQRMHAVNPLYVLRNYLAQQAIEAAEQGDYTEVRLLHRLLARPFEEQPGMERFTRRPPDW 476          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y039_VIBVU (UPF0061 protein VV1_0039 OS=Vibrio vulnificus GN=VV1_0039 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.546e-22
Identity = 65/160 (40.62%), Postives = 90/160 (56.25%), Query Frame = -3
Query:  259 YQAIMTKKLGL---PKYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYI-QELLSSGI--SDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 720
            +  +M +KLGL    + + ++ + +   +A +  DYT FFR LS +       EDE  V    + L I ++    W+S  L  +  E  +SG   S ++R   M +VNPKY+LRNYL Q AID A+ GDF EV  L KL++ PYDEQ  ME YA LPP W
Sbjct:  330 FSQLMRQKLGLLSQQEGDSELFNAMFALLAENHTDYTRFFRTLSQLDR-----EDEQTV----IDLFIDRDAAHGWLSRYLERVAMEQTASGEAKSAQQRCEQMRAVNPKYILRNYLAQQAIDKAQQGDFSEVHTLAKLLKNPYDEQAEMEAYAHLPPEW 480          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y558_PSEMY (UPF0061 protein Pmen_0558 OS=Pseudomonas mendocina (strain ymp) GN=Pmen_0558 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.244e-22
Identity = 64/166 (38.55%), Postives = 93/166 (56.02%), Query Frame = -3
Query:  259 FMDEYQA----IMTKKLGLPKY---NKQIISKLLNNMAVDKV-DYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 732
            F+  YQA    +M K+LGL      ++ ++ +LL  M   K  DY+ FFR L         P D L V ++   +D+       + +W   Y+      G   +ER+A M++VNP Y+LRNYL Q  I+AAE GD+G VR L  ++ RP+DEQPGM++YA+ PP W
Sbjct:  323 FLPLYQAHYLDLMRKRLGLTSAEDDDEALVQRLLQLMQQGKATDYSLFFRQLGE-----QAPADALQV-VRNDFVDLA-----GFDAWGRDYLARCEREGQQQDERRARMHAVNPLYILRNYLAQQVIEAAEAGDYGPVRELHAVLSRPFDEQPGMQRYAQRPPEW 477          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y1735_HERAR (UPF0061 protein HEAR1735 OS=Herminiimonas arsenicoxydans GN=HEAR1735 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.461e-22
Identity = 60/162 (37.04%), Postives = 88/162 (54.32%), Query Frame = -3
Query:  256 FMDEYQAIMTKKLGLPKYNK---QIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWA 732
            + +++  +M  KLGL        ++   L   +     D+T FFR L  ++   +   + L    + + LD     + A+  W L Y   L      D+ RK  M++VNPKYVLRNYL Q AI+ A+  DF EV +LL+++E+P+DEQP  EKYA LPP WA
Sbjct:  339 YAEKFAELMRAKLGLQTQQPDDGKLFDALFAVLQGSHADFTLFFRRLGELRIGQAASREAL----RDLFLD-----RAAFDDWALQYELRLQLENSDDDARKLAMHAVNPKYVLRNYLAQIAIEKAQNKDFSEVAKLLQVLEKPFDEQPENEKYAALPPDWA 491          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y486_PSEF5 (UPF0061 protein PFL_0486 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=PFL_0486 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.236e-21
Identity = 63/166 (37.95%), Postives = 96/166 (57.83%), Query Frame = -3
Query:  259 FMDEYQA----IMTKKLGLPKY---NKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEE-RKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 732
            F+  YQA    +M ++LG  +    +++++ +LL  M    VDY+ FFR L         PE + L  L+   +D     +  + +W   Y + +    I  ++ R+A M++VNP Y+LRNYL Q AIDAAE GD+ EVRRL +++ RP++EQPGM+ YA  PP W
Sbjct:  323 FLPLYQAHYLDLMRRRLGFTQAEDDDQKLVERLLQLMQNSGVDYSLFFRRLGE-----HAPE-QALARLRDDFVD-----RNGFDAWAELYRERVARDPIQGQDLRRARMHAVNPLYILRNYLAQKAIDAAEAGDYSEVRRLHQVLSRPFEEQPGMDSYAERPPEW 477          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y369_PSEE4 (UPF0061 protein PSEEN0369 OS=Pseudomonas entomophila (strain L48) GN=PSEEN0369 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.108e-21
Identity = 63/165 (38.18%), Postives = 89/165 (53.94%), Query Frame = -3
Query:  259 FMDEYQA----IMTKKLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 732
            F+  YQA    +M ++LGL         ++ +LL  M    VDYT FFR L         P  E L  ++   +D+       + +W + Y+        + E R+  M +VNP YVLRNYL Q AI+AAE GD+ EVRRL +++ RP++EQPGM+ YA  PP W
Sbjct:  323 FLPLYQAHYLDLMRRRLGLTTAEDDDMALVERLLQRMQSGGVDYTLFFRKLGER------PVAEALKVVRDDFVDLA-----GFDAWGVEYLARCEREPGNAEGRRERMQAVNPLYVLRNYLAQKAIEAAEAGDYSEVRRLHQVLSRPFEEQPGMQAYAERPPEW 476          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y2793_FLAJ1 (UPF0061 protein Fjoh_2793 OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=Fjoh_2793 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.108e-21
Identity = 63/172 (36.63%), Postives = 92/172 (53.49%), Query Frame = -3
Query:  256 KIGTKFMDE----YQAIMTKKLGL---PKYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLD-IGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWA 747
            KI   FMD+    Y+ +   KLGL    + +  +I  L   + + + D T FFR LS+VK   S+ +    +      ++ +  E  +AW  W   Y+  L +  +SDE R   MN +NPKYVLRNY+ Q AIDAA+  D+  V  L  L+++PYDEQP  +K+    P WA
Sbjct:  338 KILESFMDDFILDYKEMFLNKLGLFTSTETDNDLIDNLEAVLQLTETDMTIFFRNLSSVKKTDSVEKAIEKIQFAFYKIEEVSGEILDAWKKWFSVYLDRLNAEVLSDEVRLQKMNLINPKYVLRNYMAQLAIDAADKEDYSLVNELYTLLQKPYDEQPEYQKWFAKRPDWA 509          
The following BLAST results are available for this feature:
BLAST of CN189422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
Y5413_PSEA88.557e-2339.39UPF0061 protein PLES_54131 OS=Pseudomonas aerugino... [more]
Y5023_PSEAE1.460e-2239.39UPF0061 protein PA5023 OS=Pseudomonas aeruginosa G... [more]
Y494_PSEU23.252e-2239.76UPF0061 protein Psyr_0494 OS=Pseudomonas syringae ... [more]
Y5760_PSEA74.247e-2239.39UPF0061 protein PSPA7_5760 OS=Pseudomonas aerugino... [more]
Y039_VIBVU5.546e-2240.63UPF0061 protein VV1_0039 OS=Vibrio vulnificus GN=V... [more]
Y558_PSEMY7.244e-2238.55UPF0061 protein Pmen_0558 OS=Pseudomonas mendocina... [more]
Y1735_HERAR9.461e-2237.04UPF0061 protein HEAR1735 OS=Herminiimonas arsenico... [more]
Y486_PSEF51.236e-2137.95UPF0061 protein PFL_0486 OS=Pseudomonas fluorescen... [more]
Y369_PSEE42.108e-2138.18UPF0061 protein PSEEN0369 OS=Pseudomonas entomophi... [more]
Y2793_FLAJ12.108e-2136.63UPF0061 protein Fjoh_2793 OS=Flavobacterium johnso... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N08_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189422 ID=CN189422; Name=CN189422; organism=Citrus sinensis; type=EST; length=764bp
TTTTTTTTTTTTTTTAAATAAAAAATTGTAATAAATAAAATGATTTCGAA
ATGCATAAACTGTTAAAATTCTGCAAAGAAATAATGCCATACAAATTATT
TCTACTTTTTTCTGCAGCCACAAAAATAATAATAATAATAATGATTCGAC
TATTATATACATGAAGTTACAATCCTCTTTCTGGTATAGGTATAACATAA
TGCAGAGAATGGCAGATTACGATGAACAGGAAAGCATGCAAACACCTGGT
CGATAAGCCCATGCCGGGGGCAGGCGAGCATACTTTTCCATTCCTGGTTG
CTCGTCATATGGGCGTTCCATAAGTTTAAGCAACCTCCGCACCTCACCAA
AATCTCCGAGCTCAGCTGCATCGATAGCACTCTGGCACAAGTAGTTTCTA
AGAACATATTTTGGGTTCACAGAATTCATCAATGCCTTCCTTTCCTCATC
TGAGATGCCACTAGACAACAGCTCTTGTATGTACGATAACACCCAGCTGA
TCCATGCCTCCTTCCGCTCCTTTCCGATATCTAACAAAACAGCCTTCAGT
GGAACTAACAACTCATCCTCTGGAATGCTGGGATCAGCTTTGACATTGGA
AAGTGCACGAAAGAAATTTGTGTAATCAACTTTGTCAACAGCCATATTGT
TTAGAAGTTTACTAATAATCTGTTTATTGTATTTTGGAAGACCAAGTTTC
TTTGTCATAATGGCTTGATATTCATCCATAAACTTTGTTCCTATCTTTCC
ATGACATAATTTGC
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