CN189422

Overview
NameCN189422
Unique NameCN189422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y2131_KLEP7 (UPF0061 protein KPN78578_21310 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=KPN78578_21310 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.259e-14
Identity = 58/171 (33.92%), Postives = 83/171 (48.54%), Query Frame = -3
Query:  250 MDEYQ-AIMTK-------KLGL---PKYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYR 729
            +DEYQ A++T        KLGL    K +  ++  L   M  +K DYT  FR LS+ +      +     PL+   +D     + A+ SW   Y   L    + D +R+  M  VNP  VLRN+L Q AI+ AE GD GE+ RL   +  P+ ++   + Y R PP W  R
Sbjct:  316 LDEYQHALLTAYGQRMRDKLGLFSQQKGDNDLLDGLFALMIREKSDYTRTFRLLSHSE------QLSAASPLRDEFID-----RAAFDSWFAGYRARLRDEQVDDAQRQQRMQGVNPALVLRNWLAQRAIEQAEAGDMGELERLHAALADPFTDRE--DDYVRRPPDWGKR 473          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y3822_GEMAT (UPF0061 protein GAU_3822 OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=GAU_3822 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.257e-14
Identity = 52/167 (31.14%), Postives = 82/167 (49.10%), Query Frame = -3
Query:  256 GTKFMDEYQAIMTKKLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLD--IGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWA 741
            G  F+  ++A+   K G  +       +I++    M    +D+T FFRAL +  A  ++ +   +  L  V  D  +     +A  +W+  +   +         R+  M++VNP +VLRNY+ Q AIDAA  GD  +VR LL+++ RPYDEQP         P WA
Sbjct:  345 GDVFLVAHEAMQAAKFGFVRQGPDEDALITEAFALMERVDIDFTRFFRALGDAPA--ALGDASAVTVLGDVFYDATLRDTHADALTAWLRRWHVAVGRQRPDAATRRTAMHAVNPWFVLRNYVAQQAIDAATAGDPSQVRLLLEVLRRPYDEQPEHAALVARRPEWA 509          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: YDIU_SALPC (UPF0061 protein ydiU OS=Salmonella paratyphi C (strain RKS4594) GN=ydiU PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.112e-13
Identity = 51/163 (31.29%), Postives = 82/163 (50.31%), Query Frame = -3
Query:  250 MDEYQAIMTKKLGL---PKYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYR 729
            +  Y   M +KLG     K +  ++++L + MA +  DY+  FR LS+ +      +     PL+   +D     + A+ +W   Y   L +  + D  R+  M  VNP  VLRN+L Q AIDAAE GD  E+  L +++ +P+ ++   + YA  PP W  R
Sbjct:  324 LTHYGQRMRQKLGFFTEQKDDNVLLNELFSLMAREGSDYSRTFRMLSHTE------QQSASSPLRDTFID-----RAAFDAWFDRYRARLRTEAVDDALRQQQMQRVNPAVVLRNWLAQRAIDAAEQGDMAELHWLHEVLRQPFTDRD--DDYASRPPEWGKR 473          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: YDIU_SALCH (UPF0061 protein ydiU OS=Salmonella choleraesuis GN=ydiU PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.112e-13
Identity = 51/163 (31.29%), Postives = 82/163 (50.31%), Query Frame = -3
Query:  250 MDEYQAIMTKKLGL---PKYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYR 729
            +  Y   M +KLG     K +  ++++L + MA +  DY+  FR LS+ +      +     PL+   +D     + A+ +W   Y   L +  + D  R+  M  VNP  VLRN+L Q AIDAAE GD  E+  L +++ +P+ ++   + YA  PP W  R
Sbjct:  324 LTHYGQRMRQKLGFFTEQKDDNVLLNELFSLMAREGSDYSRTFRMLSHTE------QQSASSPLRDTFID-----RAAFDAWFDRYRARLRTEAVDDALRQQQMQRVNPAVVLRNWLAQRAIDAAEQGDMAELHWLHEVLRQPFTDRD--DDYASRPPEWGKR 473          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: SELO_MOUSE (Selenoprotein O OS=Mus musculus GN=Selo PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 2.112e-13
Identity = 45/112 (40.18%), Postives = 61/112 (54.46%), Query Frame = -3
Query:  256 DIGKERKEAWISWVLSYIQEL--LSSGISDE-----ERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPY---DEQPGME----------KYARLPPAWA 531
            D+ ++ ++ W +W+  Y   L     G+ D      ER  +M + NPKYVLRNY+ Q AI+AAE GDF EVR +LKL+E PY   +E  G E           Y+  PP WA
Sbjct:  547 DLQRKNRDHWEAWLQEYRDRLDKEKEGVGDTAAWQAERVRVMRANNPKYVLRNYIAQKAIEAAENGDFSEVRLVLKLLESPYHSEEEATGPEAVARSTEEQSSYSNRPPLWA 658          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y2105_ENTS8 (UPF0061 protein ESA_02105 OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=ESA_02105 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.759e-13
Identity = 53/158 (33.54%), Postives = 76/158 (48.10%), Query Frame = -3
Query:  259 EYQAIMTKKLGLP---KYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 723
            E+   M  KLG     + +   + +LL  MA +  DYT  FR LS  +   S        PL+   +D     +  + +W   Y   L   G  D+ R+ LM SVNP  VLRN+L Q AI+AAE  D  E+ RLL+ +  P+ ++   + Y   PP W
Sbjct:  328 EWGRQMRAKLGFTVEKEGDNDYLRELLTLMAREGSDYTRTFRMLSETEQHSSAS------PLRDEFID-----RATFDAWFARYRARLEEEGEEDDARQRLMKSVNPALVLRNWLAQRAIEAAERDDASELSRLLEALRNPFADRD--DDYTHRPPDW 472          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: SELO_DANRE (Selenoprotein O OS=Danio rerio GN=selo PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.603e-13
Identity = 51/144 (35.42%), Postives = 71/144 (49.31%), Query Frame = -3
Query:  244 LNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELL---SSGIS----DEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYRPG 654
            L  M  D+   +     LS +K      E++L V           +  E W  W+  Y Q L     SG+       ER  +MN+ NP  VLRNY+ Q+AI AAE GDF EV+R+LK++E+P+  Q G+E+     P W  R G
Sbjct:  520 LFQMISDRGTVSRQLERLSRLKELMDTTEEQLRV-----------KHTEHWSDWIQKYRQRLARECESGVDVKDVQTERVRVMNNNNPHVVLRNYIAQNAIAAAENGDFSEVQRVLKVLEKPFSVQEGLEQ-----PGWMGRGG 647          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y1992_XYLFT (UPF0061 protein PD_1992 OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=PD_1992 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.706e-13
Identity = 49/140 (35.00%), Postives = 72/140 (51.43%), Query Frame = -3
Query:  256 QIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWI-SWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWA 672
            ++   L   M   ++D T  F  L++   +P++P D L +  +A    + ++ +   +  W+  Y   L    +   ER   M   NP+YVLRNYL Q AI+ AE GD  E+  LL++M RPYD Q G E YA   P WA
Sbjct:  370 ELFDALRTCMHQAEMDMTLTFLGLADW--EPNMP-DSLSLWAEAFYDPVKRDAQAPMLRDWLQRYAARLSVDPLPVAERHERMRLANPRYVLRNYLTQQAIECAEQGDLTELHALLEVMRRPYDFQLGREAYAMRRPEWA 506          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y2619_XYLFA (UPF0061 protein XF_2619 OS=Xylella fastidiosa GN=XF_2619 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.027e-13
Identity = 49/140 (35.00%), Postives = 72/140 (51.43%), Query Frame = -3
Query:  256 QIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWI-SWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWA 672
            ++   L   M   ++D T  F  L++   +P++P D L +  +A    + ++ +   +  W+  Y   L    +   ER   M   NP+YVLRNYL Q AI+ AE GD  E+  LL++M RPYD Q G E YA   P WA
Sbjct:  370 ELFDALRTCMHQAEMDMTLTFLGLADW--EPNMP-DSLSLWAEAFYDPVKRDAQAPMLRDWLQRYAARLSVDPLPVAERHERMRLANPRYVLRNYLTQQAIECAEQGDLIELHALLEVMRRPYDFQLGREAYAMRRPEWA 506          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y407_SHEFN (UPF0061 protein Sfri_0407 OS=Shewanella frigidimarina (strain NCIMB 400) GN=Sfri_0407 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.048e-12
Identity = 54/178 (30.34%), Postives = 85/178 (47.75%), Query Frame = -3
Query:  259 KFMDEYQAIMTKKLGLPKYNK------------------QIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAEL-GDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 735
            + + +Y  +M  KLG  + N+                  Q++ +L   +  +++DYTN  R    +  DPS     L    +  ++D+     + W     S + E+        ER    NS NPKY+LRNYL Q AI A E  GD  ++ +L +L++RP+DEQ  ME +A+ PP W
Sbjct:  318 ELVQQYLLLMRAKLGFSQPNQSPNAINAEEQADLGNKDLQLVGQLTGLLETNQLDYTNSLRRFGQL--DPSSAHSSL----RDDMVDLAGF--DTWYQAYQSRVGEVADVNAWQCER----NSANPKYILRNYLAQEAIIAIEENGDNSKLLQLQQLLQRPFDEQSEMEDFAKRPPQW 483          
The following BLAST results are available for this feature:
BLAST of CN189422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
Y2131_KLEP73.259e-1433.92UPF0061 protein KPN78578_21310 OS=Klebsiella pneum... [more]
Y3822_GEMAT4.257e-1431.14UPF0061 protein GAU_3822 OS=Gemmatimonas aurantiac... [more]
YDIU_SALPC2.112e-1331.29UPF0061 protein ydiU OS=Salmonella paratyphi C (st... [more]
YDIU_SALCH2.112e-1331.29UPF0061 protein ydiU OS=Salmonella choleraesuis GN... [more]
SELO_MOUSE2.112e-1340.18Selenoprotein O OS=Mus musculus GN=Selo PE=1 SV=3[more]
Y2105_ENTS82.759e-1333.54UPF0061 protein ESA_02105 OS=Enterobacter sakazaki... [more]
SELO_DANRE3.603e-1335.42Selenoprotein O OS=Danio rerio GN=selo PE=2 SV=2[more]
Y1992_XYLFT4.706e-1335.00UPF0061 protein PD_1992 OS=Xylella fastidiosa (str... [more]
Y2619_XYLFA8.027e-1335.00UPF0061 protein XF_2619 OS=Xylella fastidiosa GN=X... [more]
Y407_SHEFN1.048e-1230.34UPF0061 protein Sfri_0407 OS=Shewanella frigidimar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N08_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189422 ID=CN189422; Name=CN189422; organism=Citrus sinensis; type=EST; length=764bp
TTTTTTTTTTTTTTTAAATAAAAAATTGTAATAAATAAAATGATTTCGAA
ATGCATAAACTGTTAAAATTCTGCAAAGAAATAATGCCATACAAATTATT
TCTACTTTTTTCTGCAGCCACAAAAATAATAATAATAATAATGATTCGAC
TATTATATACATGAAGTTACAATCCTCTTTCTGGTATAGGTATAACATAA
TGCAGAGAATGGCAGATTACGATGAACAGGAAAGCATGCAAACACCTGGT
CGATAAGCCCATGCCGGGGGCAGGCGAGCATACTTTTCCATTCCTGGTTG
CTCGTCATATGGGCGTTCCATAAGTTTAAGCAACCTCCGCACCTCACCAA
AATCTCCGAGCTCAGCTGCATCGATAGCACTCTGGCACAAGTAGTTTCTA
AGAACATATTTTGGGTTCACAGAATTCATCAATGCCTTCCTTTCCTCATC
TGAGATGCCACTAGACAACAGCTCTTGTATGTACGATAACACCCAGCTGA
TCCATGCCTCCTTCCGCTCCTTTCCGATATCTAACAAAACAGCCTTCAGT
GGAACTAACAACTCATCCTCTGGAATGCTGGGATCAGCTTTGACATTGGA
AAGTGCACGAAAGAAATTTGTGTAATCAACTTTGTCAACAGCCATATTGT
TTAGAAGTTTACTAATAATCTGTTTATTGTATTTTGGAAGACCAAGTTTC
TTTGTCATAATGGCTTGATATTCATCCATAAACTTTGTTCCTATCTTTCC
ATGACATAATTTGC
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