CN189422

Overview
NameCN189422
Unique NameCN189422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189422_ssr125 microsatellite CN189422_ssr125:125..142. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig283 contig Csv1_Contig283:5..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y1089_VIBVY (UPF0061 protein VV1089 OS=Vibrio vulnificus (strain YJ016) GN=VV1089 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.108e-21
Identity = 61/160 (38.12%), Postives = 89/160 (55.62%), Query Frame = -3
Query:  259 YQAIMTKKLGL---PKYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQ-ELLSSGI--SDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 720
            +  +M +KLGL    + + ++ + +   +A +  DYT FFR LS + ++ +    +L          I ++    W+S  L  +  E  +SG   S ++R   M +VNPKY+LRNYL Q AID A+ GDF EV  L KL++ PYDEQ  ME YA LPP W
Sbjct:  330 FSQLMRQKLGLLSQQEGDSELFNAMFTLLAENHTDYTRFFRTLSQLDSEGAQTVIDLF---------IDRDAARGWLSRYLERVALEQTASGEAKSAQQRCEQMRAVNPKYILRNYLAQQAIDKAQQGDFSEVHTLAKLLKNPYDEQAEMEAYAHLPPEW 480          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y4511_AZOVD (UPF0061 protein Avin_45110 OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=Avin_45110 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.753e-21
Identity = 60/162 (37.04%), Postives = 90/162 (55.56%), Query Frame = -3
Query:  259 FMDEYQAIMTKKLGLPKY---NKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEE-RKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 732
            F   +  +M ++LG       +++ I +LL  M    VDY+ FFR L +  A  ++        L+   +D+       + +W   ++  L     +DE  R+A M++VNPKY+LRNYL Q AI+AAE GD+  VR L  ++ RP+DEQPGME+YA  PP W
Sbjct:  327 FRGAWLELMRRRLGFTTAEADDRERIQRLLQLMQGSAVDYSRFFRELGDRPAAAALRR------LREDFVDLA-----GFDAWAGDHLARLARENEADEAARRARMHAVNPKYILRNYLAQQAIEAAERGDYSPVRELHAVLSRPFDEQPGMERYAERPPEW 477          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y444_PSEFS (UPF0061 protein PFLU_0444 OS=Pseudomonas fluorescens (strain SBW25) GN=PFLU_0444 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.753e-21
Identity = 60/162 (37.04%), Postives = 95/162 (58.64%), Query Frame = -3
Query:  259 FMDEYQAIMTKKLGLPKY---NKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGI-SDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 732
            +   Y  +M ++LGL      +++++ +LL  M    VDYT FFR L +  A  ++        L+   +D+       + +W   Y   +   G  S+E+R+A M++VNP Y+LRNYL Q+AI AAE GD+ EVRRL +++ +P++EQ GME+YA+ PP W
Sbjct:  327 YQANYLDLMRRRLGLTTAEDDDQKLVERLLKLMQSSGVDYTLFFRRLGDEPAALAVTR------LRDDFVDLA-----GFDAWAEQYKARVERDGDNSEEQRRARMHAVNPLYILRNYLAQNAIAAAESGDYSEVRRLHEVLSKPFEEQAGMEQYAQRPPDW 477          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y1788_METFK (UPF0061 protein Mfla_1788 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=Mfla_1788 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.695e-21
Identity = 56/162 (34.57%), Postives = 88/162 (54.32%), Query Frame = -3
Query:  256 FMDEYQAIMTKKLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWA 732
            + +E+ A++  K G   +  +   +++++   M   ++D T FFR L+ V A      D  ++   A    + +  K  +  W+  Y Q  L+ G    ER+  MN VNP+YVLRNYL Q AID A+ GD   +  L+ ++ +PYDEQPG E++A L P WA
Sbjct:  347 YNNEWGAVLAAKFGFSAWRDEYEPLLNEVFGLMTQAEIDMTEFFRKLALVDA---AQPDLGILQSAAYSPALWETFKPRFSDWLGQYAQATLADGRDPAERREAMNRVNPRYVLRNYLAQQAIDLADTGDTSMIEALMDVLRKPYDEQPGKERFAALRPDWA 505          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y5028_PSESM (UPF0061 protein PSPTO_5028 OS=Pseudomonas syringae pv. tomato GN=PSPTO_5028 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.009e-21
Identity = 66/166 (39.76%), Postives = 94/166 (56.63%), Query Frame = -3
Query:  259 FMDEYQA----IMTKKLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEE-RKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 732
            F+  YQA    +M ++LGL     Q   ++S+LL  M    VDYT FFR L +       P  + L  L+   +DI     + +  W  +Y   + +     E+ RK  M++VNP Y+LRNYL Q+AI+AAE GD+ EVRRL +++  P+ EQPGME YA+ PP W
Sbjct:  323 FLPLYQAHYLDLMRRRLGLTVAQDQDDKLVSQLLQLMQNSGVDYTLFFRRLGDQ------PAAQALRALRDDFVDI-----KVFDDWAQAYQARIAAEENGTEQARKERMHAVNPLYILRNYLAQNAIEAAEKGDYEEVRRLHQVLCTPFTEQPGMEGYAQRPPDW 477          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y585_METCA (UPF0061 protein MCA0585 OS=Methylococcus capsulatus GN=MCA0585 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.366e-20
Identity = 62/149 (41.61%), Postives = 80/149 (53.69%), Query Frame = -3
Query:  265 KLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSS-GISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPP 699
            KLGL +  +    +I + L  +   + D+T  FR L  ++ D   P   +    +    DI      A+ +WV  Y   L S   + DE R   MN VNPKYVLRN+L Q AID A LGD+ EV RL +L+ RPYDEQP ME YA  PP
Sbjct:  353 KLGLREVRETDAGLIDEFLGLLQRGRGDFTRSFRLLGRIRTDSDAPARGV----REAFADIN-----AFDAWVADYRTRLRSEQNVDDEARAGRMNRVNPKYVLRNHLAQIAIDKAMLGDYSEVARLAELLRRPYDEQPDMEAYAAEPP 492          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y1019_THIDA (UPF0061 protein Tbd_1019 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=Tbd_1019 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.366e-20
Identity = 65/160 (40.62%), Postives = 87/160 (54.37%), Query Frame = -3
Query:  250 YQAIMTKKLGLPKYNKQI--ISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAID-AAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYR 720
            Y A M  K GL   +  +  I+  L  +A ++VDYT F R L    +      D    PL+ + LD     + A+ +W + Y   L   G  D ER A M + NPKY+LRNYL ++AI  AA+L D+ EV RL +L+ RP+DEQP  E YA  PP WA R
Sbjct:  331 YLARMAAKFGLAPGDDTVPLITDALQLLAGNRVDYTIFLRKLCAFDSQA----DAGNAPLRDLFLD-----RAAFDAWAVRYGAALRQHGQPDAERAATMRTRNPKYILRNYLAENAIRRAADLRDYSEVERLHRLLARPFDEQPAFEAYAAEPPDWAKR 481          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y5118_PSEPG (UPF0061 protein PputGB1_5118 OS=Pseudomonas putida (strain GB-1) GN=PputGB1_5118 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.330e-20
Identity = 61/165 (36.97%), Postives = 90/165 (54.55%), Query Frame = -3
Query:  259 FMDEYQA----IMTKKLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 732
            F+  YQA    +M ++LGL    +    ++ +LL  M    VDY+ FFR L         P  + L  ++   +D+      A+ +W   Y+        + E R+  M++VNP YVLRNYL Q AI+AAE GD+ EVRRL +++  P++EQPGM+ YA  PP W
Sbjct:  323 FLPLYQAHYLDLMRRRLGLTTAEEDDMALVERLLQCMQRGGVDYSLFFRKLGEQ------PAADALKVVRDDFIDLA-----AFDAWGADYLARCDREPGNAEGRRERMHAVNPLYVLRNYLAQKAIEAAEAGDYSEVRRLHQVLSHPFEEQPGMQAYAERPPEW 476          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y4941_PSEP1 (UPF0061 protein Pput_4941 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=Pput_4941 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.330e-20
Identity = 62/165 (37.58%), Postives = 88/165 (53.33%), Query Frame = -3
Query:  259 FMDEYQA----IMTKKLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 732
            F+  YQA    +M ++LGL         ++ +LL  M    VDY+ FFR L         P  E L   +   +D+       + +W   Y+        + E R+  M++VNP YVLRNYL Q AI+AAE GD+ EVRRL +++ RP++EQPGM+ YA  PP W
Sbjct:  323 FLPLYQAHYLDLMRRRLGLTTAEDDDMALVERLLQCMQRGGVDYSLFFRKLGEQ------PVAEALKVARDDFIDLA-----GFDAWGADYLARCRREPGNAEGRRERMHAVNPLYVLRNYLAQKAIEAAEAGDYSEVRRLHQVLTRPFEEQPGMQAYAERPPEW 476          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y1842_ERWCT (UPF0061 protein ECA1842 OS=Erwinia carotovora subsp. atroseptica GN=ECA1842 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.330e-20
Identity = 63/161 (39.13%), Postives = 84/161 (52.17%), Query Frame = -3
Query:  259 MDEYQAIMTKKLGL----PKYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 729
            M  Y  +M  KLGL    P  N  ++  LL  M  +  DYT  FR L++ +   S        PL+   +D     + A+ SW  +Y Q L+     DEER+ LMN+ NPKY+LRNYL Q AI+ AE  D   + RL + + RP+DEQP     A LPP W
Sbjct:  325 MQHYGTLMRAKLGLFTASPDDNDVLVG-LLRLMQKEGSDYTRTFRLLADSEKQASRS------PLRDEFID-----RAAFDSWFATYRQRLMQEDQDDEERRRLMNATNPKYILRNYLAQMAIERAESDDTSALARLHQALCRPFDEQPDSHDLAALPPDW 473          
The following BLAST results are available for this feature:
BLAST of CN189422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
Y1089_VIBVY2.108e-2138.13UPF0061 protein VV1089 OS=Vibrio vulnificus (strai... [more]
Y4511_AZOVD2.753e-2137.04UPF0061 protein Avin_45110 OS=Azotobacter vineland... [more]
Y444_PSEFS2.753e-2137.04UPF0061 protein PFLU_0444 OS=Pseudomonas fluoresce... [more]
Y1788_METFK4.695e-2134.57UPF0061 protein Mfla_1788 OS=Methylobacillus flage... [more]
Y5028_PSESM8.009e-2139.76UPF0061 protein PSPTO_5028 OS=Pseudomonas syringae... [more]
Y585_METCA1.366e-2041.61UPF0061 protein MCA0585 OS=Methylococcus capsulatu... [more]
Y1019_THIDA1.366e-2040.63UPF0061 protein Tbd_1019 OS=Thiobacillus denitrifi... [more]
Y5118_PSEPG2.330e-2036.97UPF0061 protein PputGB1_5118 OS=Pseudomonas putida... [more]
Y4941_PSEP12.330e-2037.58UPF0061 protein Pput_4941 OS=Pseudomonas putida (s... [more]
Y1842_ERWCT2.330e-2039.13UPF0061 protein ECA1842 OS=Erwinia carotovora subs... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N08_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189422 ID=CN189422; Name=CN189422; organism=Citrus sinensis; type=EST; length=764bp
TTTTTTTTTTTTTTTAAATAAAAAATTGTAATAAATAAAATGATTTCGAA
ATGCATAAACTGTTAAAATTCTGCAAAGAAATAATGCCATACAAATTATT
TCTACTTTTTTCTGCAGCCACAAAAATAATAATAATAATAATGATTCGAC
TATTATATACATGAAGTTACAATCCTCTTTCTGGTATAGGTATAACATAA
TGCAGAGAATGGCAGATTACGATGAACAGGAAAGCATGCAAACACCTGGT
CGATAAGCCCATGCCGGGGGCAGGCGAGCATACTTTTCCATTCCTGGTTG
CTCGTCATATGGGCGTTCCATAAGTTTAAGCAACCTCCGCACCTCACCAA
AATCTCCGAGCTCAGCTGCATCGATAGCACTCTGGCACAAGTAGTTTCTA
AGAACATATTTTGGGTTCACAGAATTCATCAATGCCTTCCTTTCCTCATC
TGAGATGCCACTAGACAACAGCTCTTGTATGTACGATAACACCCAGCTGA
TCCATGCCTCCTTCCGCTCCTTTCCGATATCTAACAAAACAGCCTTCAGT
GGAACTAACAACTCATCCTCTGGAATGCTGGGATCAGCTTTGACATTGGA
AAGTGCACGAAAGAAATTTGTGTAATCAACTTTGTCAACAGCCATATTGT
TTAGAAGTTTACTAATAATCTGTTTATTGTATTTTGGAAGACCAAGTTTC
TTTGTCATAATGGCTTGATATTCATCCATAAACTTTGTTCCTATCTTTCC
ATGACATAATTTGC
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