CN189422

Overview
NameCN189422
Unique NameCN189422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189422_ssr125 microsatellite CN189422_ssr125:125..142. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig283 contig Csv1_Contig283:5..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y1877_BURM1 (UPF0061 protein Bmul_1366/BMULJ_01877 OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=Bmul_1366 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.365e-19
Identity = 59/163 (36.20%), Postives = 85/163 (52.15%), Query Frame = -3
Query:  256 KFMDEYQAIMTKKLGLPKY---NKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWA 735
            +F    +  M  KLGL      +  + ++LL  M   + D+T  FR L+ +    +  +     P++ + +D     +EA+ +W   Y   L      D  R A MN VNPKYVLRN+L + AI  A+  DF EV RL +++ RP+DEQP  E YA LPP WA
Sbjct:  360 RFGPALERAMRAKLGLALERDGDAALANQLLETMHASRADFTLTFRRLAQLSKHDASRD----APVRDLFID-----REAFDAWANLYRARLSEETRDDAARAAAMNRVNPKYVLRNHLAELAIRRAKEKDFSEVERLAQVLRRPFDEQPEHESYAALPPDWA 513          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y1924_BURPP (UPF0061 protein Bphyt_1924 OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=Bphyt_1924 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.496e-19
Identity = 59/168 (35.12%), Postives = 87/168 (51.79%), Query Frame = -3
Query:  256 GKIGTKFMDEYQAIMTKKLGLP---KYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWA 750
            G    +F    +  M  KLGL    + +  ++++L   M  ++ D+T  FR L+ V    +  +     P++ + LD     + A+ +WV  Y   L      D  R   MN VNPK+VLRN+L ++AI  A+  DF EV RL  ++ RP+DEQP  E YA LPP WA
Sbjct:  351 GGFKNRFAPALERRMRAKLGLEIEREGDDGLVNRLFEVMHANRADFTLTFRNLARVSKHDASGD----APVRDLFLD-----RAAFDAWVNDYRARLSEETRDDAARAIAMNRVNPKFVLRNHLAETAIRRAKEKDFSEVERLAAILRRPFDEQPEHEAYAGLPPDWA 509          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y2457_BURP1 (UPF0061 protein BURPS1710b_2457 OS=Burkholderia pseudomallei (strain 1710b) GN=BURPS1710b_2457 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.790e-19
Identity = 59/168 (35.12%), Postives = 86/168 (51.19%), Query Frame = -3
Query:  256 GKIGTKFMDEYQAIMTKKLGLP---KYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWA 750
            G+   +F    +  M  KLGL    + +  + ++LL  M     D+T  FR L+ V    +  +     P++ + +D     ++A+  W   Y   L      D  R A MN VNPKYVLRN+L ++AI  A+  DF EV RL  ++ RP+DEQP  + YA LPP WA
Sbjct:  354 GRFPEQFGPALERAMRAKLGLALEREGDAALANQLLEIMDASHADFTLTFRHLARVSKHDARGD----APVRDLFID-----RDAFDRWANLYRARLSEEARDDASRAAAMNRVNPKYVLRNHLAETAIRRAKEKDFSEVERLAAVLRRPFDEQPEHDAYAALPPDWA 512          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y185_AERS4 (UPF0061 protein ASA_0185 OS=Aeromonas salmonicida (strain A449) GN=ASA_0185 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.790e-19
Identity = 61/162 (37.65%), Postives = 80/162 (49.38%), Query Frame = -3
Query:  259 KFMDEYQAIMTKKLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 735
            + M  Y  +M  KLGL ++ ++   +  +L   +A   VDY  F R L  V      P       L A+L D      + W  W+  Y   L   G  D  RKA M+++NPKYVLRN L Q AIDAAE GD  +  RLL  +++PYDEQP     A   P W
Sbjct:  314 QLMLHYSELMRAKLGLTQWEEEDPALFRQLFQLLASQGVDYHLFLRRLGEVTGTGEWPAS-----LLALLPD-----PDLWQGWLELYRVRLTREGGEDAVRKAQMDAINPKYVLRNALAQQAIDAAEGGDMTQFERLLAALQQPYDEQPEYADLATPVPQW 465          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y1422_BURPS (UPF0061 protein BPSL1422 OS=Burkholderia pseudomallei GN=BPSL1422 PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 9.790e-19
Identity = 59/168 (35.12%), Postives = 86/168 (51.19%), Query Frame = -3
Query:  256 GKIGTKFMDEYQAIMTKKLGLP---KYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWA 750
            G+   +F    +  M  KLGL    + +  + ++LL  M     D+T  FR L+ V    +  +     P++ + +D     ++A+  W   Y   L      D  R A MN VNPKYVLRN+L ++AI  A+  DF EV RL  ++ RP+DEQP  + YA LPP WA
Sbjct:  354 GRFPEQFGPALERAMRAKLGLALEREGDAALANQLLEIMDASHADFTLTFRHLARVSKHDARGD----APVRDLFID-----RDAFDRWANLYRARLSEEARDDASRAAAMNRVNPKYVLRNHLAETAIRRAKEKDFSEVERLAAVLRRPFDEQPEHDAYAALPPDWA 512          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y2935_VARPS (UPF0061 protein Vapar_2935 OS=Variovorax paradoxus (strain S110) GN=Vapar_2935 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.279e-18
Identity = 61/164 (37.20%), Postives = 90/164 (54.88%), Query Frame = -3
Query:  256 TKFMDEYQAIMTKKLGLPKY---NKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWA 738
            T F  E+++ M  KLGL +    ++ +I  +L  MA +KVDYT F+R LS   A  +        P++ + LD     +  + +W+LS+ +    + +   +   LM   NPKYVLRN+L Q AI+AA   DF  V  LL L+E P++E PG + YA  PP WA
Sbjct:  335 TVFPREFESRMRAKLGLAEPAEGDRALIEGVLKLMAAEKVDYTIFWRRLSQHMAGGNAE------PVRDLFLD-----RAGFDAWLLSFSER--HAQLPRAQAADLMLRSNPKYVLRNHLGQQAIEAASQKDFSAVATLLALLETPFEEHPGADAYAGFPPDWA 485          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y2140_BURTA (UPF0061 protein BTH_I2140 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=BTH_I2140 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.279e-18
Identity = 58/168 (34.52%), Postives = 86/168 (51.19%), Query Frame = -3
Query:  256 GKIGTKFMDEYQAIMTKKLGLP---KYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWA 750
            G+   +F    +  M  KLGL    + +  + ++LL  M   + D+T  FR L+ V    +  +     P++ + +D     ++A+  W   Y   L      D  R A MN  NPKYVLRN+L ++AI  A+  DF EV RL  ++ RP+DEQP  + YA LPP WA
Sbjct:  354 GRFAEQFGPALERAMRAKLGLELEREGDAALANQLLEIMDASRADFTLTFRHLARVSKHDARGD----APVRDLFVD-----RDAFDRWANLYRARLSEEARDDAARAAAMNRANPKYVLRNHLAETAIRRAKEKDFSEVERLAAVLRRPFDEQPEHDAYAALPPDWA 512          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y5674_BURM9 (UPF0061 protein BMA10229_A3374 OS=Burkholderia mallei (strain NCTC 10229) GN=BMA10229_A3374 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.848e-18
Identity = 58/168 (34.52%), Postives = 86/168 (51.19%), Query Frame = -3
Query:  256 GKIGTKFMDEYQAIMTKKLGLP---KYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWA 750
            G+   +F    +  +  KLGL    + +  + ++LL  M     D+T  FR L+ V    +  +     P++ + +D     ++A+  W   Y   L      D  R A MN VNPKYVLRN+L ++AI  A+  DF EV RL  ++ RP+DEQP  + YA LPP WA
Sbjct:  354 GRFPEQFGPALERAIRAKLGLALEREGDAALANQLLEIMDASHADFTLTFRHLARVSKHDARGD----APVRDLFID-----RDAFDRWANLYRARLSEEARDDASRAAAMNRVNPKYVLRNHLAETAIRRAKEKDFSEVERLAAVLRRPFDEQPEHDAYAALPPDWA 512          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y1440_BURMA (UPF0061 protein BMA1440 OS=Burkholderia mallei GN=BMA1440 PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.848e-18
Identity = 58/168 (34.52%), Postives = 86/168 (51.19%), Query Frame = -3
Query:  256 GKIGTKFMDEYQAIMTKKLGLP---KYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWA 750
            G+   +F    +  +  KLGL    + +  + ++LL  M     D+T  FR L+ V    +  +     P++ + +D     ++A+  W   Y   L      D  R A MN VNPKYVLRN+L ++AI  A+  DF EV RL  ++ RP+DEQP  + YA LPP WA
Sbjct:  354 GRFPEQFGPALERAIRAKLGLALEREGDAALANQLLEIMDASHADFTLTFRHLARVSKHDARGD----APVRDLFID-----RDAFDRWANLYRARLSEEARDDASRAAAMNRVNPKYVLRNHLAETAIRRAKEKDFSEVERLAAVLRRPFDEQPEHDAYAALPPDWA 512          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y3959_PSEA6 (UPF0061 protein Patl_3959 OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=Patl_3959 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.859e-18
Identity = 55/160 (34.38%), Postives = 91/160 (56.88%), Query Frame = -3
Query:  259 MDEYQAIMTKKLGLPKYNK---QIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 729
            M E+  +M +KLGL +  +   +++++ L+ +  DK DY   FR L  V       E++ LV    +  D  K       +W+  Y   L++ G+  +ER+A M ++NP+YVLRNY  Q AIDAA+ GDF   R+LL +++ P++ +P   ++A+ PP W
Sbjct:  322 MAEFSQLMRQKLGLYENTQNTAELVNRWLDLIYQDKRDYHISFRLLCEVDEHG---ENQPLVD-HFIQRDTAK-------TWLEHYQNALITQGVKRQERQANMRNINPEYVLRNYQAQLAIDAAQNGDFSRFRKLLHVLQHPFESKPEYAEFAKPPPNW 470          
The following BLAST results are available for this feature:
BLAST of CN189422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
Y1877_BURM13.365e-1936.20UPF0061 protein Bmul_1366/BMULJ_01877 OS=Burkholde... [more]
Y1924_BURPP7.496e-1935.12UPF0061 protein Bphyt_1924 OS=Burkholderia phytofi... [more]
Y2457_BURP19.790e-1935.12UPF0061 protein BURPS1710b_2457 OS=Burkholderia ps... [more]
Y185_AERS49.790e-1937.65UPF0061 protein ASA_0185 OS=Aeromonas salmonicida ... [more]
Y1422_BURPS9.790e-1935.12UPF0061 protein BPSL1422 OS=Burkholderia pseudomal... [more]
Y2935_VARPS1.279e-1837.20UPF0061 protein Vapar_2935 OS=Variovorax paradoxus... [more]
Y2140_BURTA1.279e-1834.52UPF0061 protein BTH_I2140 OS=Burkholderia thailand... [more]
Y5674_BURM92.848e-1834.52UPF0061 protein BMA10229_A3374 OS=Burkholderia mal... [more]
Y1440_BURMA2.848e-1834.52UPF0061 protein BMA1440 OS=Burkholderia mallei GN=... [more]
Y3959_PSEA64.859e-1834.38UPF0061 protein Patl_3959 OS=Pseudoalteromonas atl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N08_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189422 ID=CN189422; Name=CN189422; organism=Citrus sinensis; type=EST; length=764bp
TTTTTTTTTTTTTTTAAATAAAAAATTGTAATAAATAAAATGATTTCGAA
ATGCATAAACTGTTAAAATTCTGCAAAGAAATAATGCCATACAAATTATT
TCTACTTTTTTCTGCAGCCACAAAAATAATAATAATAATAATGATTCGAC
TATTATATACATGAAGTTACAATCCTCTTTCTGGTATAGGTATAACATAA
TGCAGAGAATGGCAGATTACGATGAACAGGAAAGCATGCAAACACCTGGT
CGATAAGCCCATGCCGGGGGCAGGCGAGCATACTTTTCCATTCCTGGTTG
CTCGTCATATGGGCGTTCCATAAGTTTAAGCAACCTCCGCACCTCACCAA
AATCTCCGAGCTCAGCTGCATCGATAGCACTCTGGCACAAGTAGTTTCTA
AGAACATATTTTGGGTTCACAGAATTCATCAATGCCTTCCTTTCCTCATC
TGAGATGCCACTAGACAACAGCTCTTGTATGTACGATAACACCCAGCTGA
TCCATGCCTCCTTCCGCTCCTTTCCGATATCTAACAAAACAGCCTTCAGT
GGAACTAACAACTCATCCTCTGGAATGCTGGGATCAGCTTTGACATTGGA
AAGTGCACGAAAGAAATTTGTGTAATCAACTTTGTCAACAGCCATATTGT
TTAGAAGTTTACTAATAATCTGTTTATTGTATTTTGGAAGACCAAGTTTC
TTTGTCATAATGGCTTGATATTCATCCATAAACTTTGTTCCTATCTTTCC
ATGACATAATTTGC
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