CN189422

Overview
NameCN189422
Unique NameCN189422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y2395_RHOFD (UPF0061 protein Rfer_2395 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=Rfer_2395 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.859e-18
Identity = 61/172 (35.47%), Postives = 91/172 (52.91%), Query Frame = -3
Query:  256 TKFMDEYQAIMTKKLGL-------PKYNKQIISKLLNNMAVDKVDYTNFFRALSN--VKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQEL--LSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWA 738
            T F   ++ +M  KLGL          ++ ++  +L  +A ++VDYT F+R LS+  V  D     D          L + +   +AW+   L Y + L  +  G++ +    LM   NPK+VLRNYL + AI AA+L DF +V  LL L+E P++E PG +KYA  PP WA
Sbjct:  333 TVFPAAFERLMFAKLGLLDASDSTATVDRALLQDILQLLAREQVDYTIFWRRLSHCGVATDAQTVRD----------LFVDRSAADAWL---LRYSERLEHIPQGLAAD----LMLKTNPKFVLRNYLGEQAIQAAKLKDFSQVETLLMLLESPFEEHPGFDKYADFPPDWA 487          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y1931_VIBCH (UPF0061 protein VC_1931 OS=Vibrio cholerae GN=VC_1931 PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.859e-18
Identity = 61/163 (37.42%), Postives = 87/163 (53.37%), Query Frame = -3
Query:  259 YQAIMTKKLGLPKYNK---QIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQ----ELLSSG--ISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 720
            +  +M  KLGL    +   ++ +     +A +  DYT F R LS +    +    E ++ L   +LD     +EA  +W+  Y++    EL   G  IS  ER   M  VNPKY+LRNYL Q AI+ AE GDF E++RL  ++  PY E P  E+YA+LPP W
Sbjct:  329 FSRLMRAKLGLATQQEGDGELFADFFALLANNHTDYTRFLRELSCLDRQGN----EAVIDL---VLD-----REAAKTWLTRYLERAARELGQEGRPISTRERCQAMRQVNPKYILRNYLAQQAIEFAERGDFEEMQRLATVLASPYAEHPEFERYAKLPPEW 479          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y2336_BURP0 (UPF0061 protein BURPS1106A_2336 OS=Burkholderia pseudomallei (strain 1106a) GN=BURPS1106A_2336 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.414e-17
Identity = 58/168 (34.52%), Postives = 85/168 (50.60%), Query Frame = -3
Query:  256 GKIGTKFMDEYQAIMTKKLGLP---KYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWA 750
            G+   +F    +  M  KLGL    + +  + ++LL  M     D+T  FR L+ V    +  +     P++ + +D     ++A+  W   Y   L      D  R A MN VNPKYVLRN+L ++AI  A+  DF EV RL  ++ RP+DEQ   + YA LPP WA
Sbjct:  354 GRFPEQFGPALERAMRAKLGLALEREGDAALANQLLEIMDASHADFTLTFRHLARVSKHDARGD----APVRDLFID-----RDAFDRWANLYRARLSEEARDDASRAAAMNRVNPKYVLRNHLAETAIRRAKEKDFSEVERLAAVLRRPFDEQLEHDAYAALPPDWA 512          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y2284_XANCP (UPF0061 protein XCC2284 OS=Xanthomonas campestris pv. campestris GN=XCC2284 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.414e-17
Identity = 63/169 (37.28%), Postives = 84/169 (49.70%), Query Frame = -3
Query:  256 KFMDEYQAIMTK----KLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWI--SWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWA 735
            +F D Y A   +    KLGL +   +   +I  L   M   ++D T  FR L  V   P  P+  +L   +    D  K   +A    +W+  Y    L  G SD  R + M + NP+YVLRNYL Q AID AE GD   V  LL++M+RPYD+QP  E +A   P WA
Sbjct:  342 QFRDTYLACDRRDTAAKLGLAECQDEDLHLIDDLRALMREAEMDMTLTFRGL--VDLSPQQPDASVL---REAFYDETKRAAQAPALGAWLQRYAARCLQDGASDAVRASRMRAANPRYVLRNYLAQQAIDQAEQGDLSGVHALLEVMQRPYDDQPRRESFAAKRPDWA 505          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y1894_XANCB (UPF0061 protein xcc-b100_1894 OS=Xanthomonas campestris pv. campestris (strain B100) GN=xcc-b100_1894 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.414e-17
Identity = 63/169 (37.28%), Postives = 84/169 (49.70%), Query Frame = -3
Query:  256 KFMDEYQAIMTK----KLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWI--SWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWA 735
            +F D Y A   +    KLGL +   +   +I  L   M   ++D T  FR L  V   P  P+  +L   +    D  K   +A    +W+  Y    L  G SD  R + M + NP+YVLRNYL Q AID AE GD   V  LL++M+RPYD+QP  E +A   P WA
Sbjct:  342 QFRDTYLACDRRDTAAKLGLAECQDEDLHLIDDLRALMREAEMDMTLTFRGL--VDLSPQQPDASVL---REAFYDETKRAAQAPALGAWLQRYAARCLQDGASDAVRASRMRAANPRYVLRNYLAQQAIDQAEQGDLSGVHALLEVMQRPYDDQPRRESFAAKRPDWA 505          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y1831_XANC8 (UPF0061 protein XC_1831 OS=Xanthomonas campestris pv. campestris (strain 8004) GN=XC_1831 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.414e-17
Identity = 63/169 (37.28%), Postives = 84/169 (49.70%), Query Frame = -3
Query:  256 KFMDEYQAIMTK----KLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWI--SWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWA 735
            +F D Y A   +    KLGL +   +   +I  L   M   ++D T  FR L  V   P  P+  +L   +    D  K   +A    +W+  Y    L  G SD  R + M + NP+YVLRNYL Q AID AE GD   V  LL++M+RPYD+QP  E +A   P WA
Sbjct:  342 QFRDTYLACDRRDTAAKLGLAECQDEDLHLIDDLRALMREAEMDMTLTFRGL--VDLSPQQPDASVL---REAFYDETKRAAQAPALGAWLQRYAARCLQDGASDAVRASRMRAANPRYVLRNYLAQQAIDQAEQGDLSGVHALLEVMQRPYDDQPRRESFAAKRPDWA 505          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y1045_ALHEH (UPF0061 protein Mlg_1045 OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=Mlg_1045 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.414e-17
Identity = 60/155 (38.71%), Postives = 86/155 (55.48%), Query Frame = -3
Query:  268 YQAIMTKKLGLPKYNK---QIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAA-ELGDFGEVRRLLKLMERPYDEQPGMEKYARLP 720
            + A +  KLGL +  +    +  +LL+ MA  + D+T  FRALS+ + D   P++    P +         R EA   W   +IQ L   G  +  R+A M +VNPK++LRN+L Q A+DAA E GDFG + RLL+++ RPYD QP  E  A  P
Sbjct:  337 HHARLRAKLGLAESRRGDIDLAHELLDLMARQQADFTQVFRALSDERMDD--PDEG---PARRCFA-----RPEALDGWRARWIQRLRQEGRPEPARQAAMRAVNPKFILRNHLAQWAVDAATERGDFGPMDRLLQVLTRPYDPQPEAEALAAPP 481          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y2277_BORA1 (UPF0061 protein BAV2277 OS=Bordetella avium (strain 197N) GN=BAV2277 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.411e-17
Identity = 63/166 (37.95%), Postives = 84/166 (50.60%), Query Frame = -3
Query:  256 TKFMDEYQAIMTKKLGLPKY---NKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLD--IGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWA 738
            T F   + A M  KLGL  +   ++ ++  LL  M   + D+T  FRAL+      + P            LD  I +E  +AW S + +        G +   R   M+ VNP YVLRN+L + AI AA+ GD  E+ RLL L+ RPYD QPG E YA LPP WA
Sbjct:  330 TLFTQAFHARMGAKLGLSVWQSDDEALLDDLLRLMHDSRADFTLTFRALAQAVRGQTQP-----------FLDYFIDREAAQAWWSRLAA---RHACDGRAAAVRAEGMDRVNPLYVLRNHLAEQAIRAAQQGDASEIDRLLGLLRRPYDLQPGAEAYAALPPDWA 481          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y2155_BURXL (UPF0061 protein Bxeno_A2155 OS=Burkholderia xenovorans (strain LB400) GN=Bxeno_A2155 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.149e-17
Identity = 59/168 (35.12%), Postives = 84/168 (50.00%), Query Frame = -3
Query:  256 GKIGTKFMDEYQAIMTKKLGLPKY---NKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWA 750
            G    +F    +  M  KLGL      +  + ++L   M  ++ D+T  FR L+ V    +  +        A + D+  +R  A+ +WV  Y   L      D  R   MN VNPK+VLRN+L ++AI  A+  DF EV RL  ++ RP+DEQP  E YA LPP WA
Sbjct:  351 GGFKDRFAPALERRMRAKLGLETERAGDDALANRLFEVMHANRADFTLTFRNLARVSKHDASGD--------AAVRDLFLDRA-AFDAWVNDYRARLSEETREDAARAIAMNRVNPKFVLRNHLAETAIRRAKEKDFSEVERLAAVLRRPFDEQPEHEAYAGLPPDWA 509          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y2589_XANC5 (UPF0061 protein XCV2589 OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=XCV2589 PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 4.113e-17
Identity = 63/169 (37.28%), Postives = 83/169 (49.11%), Query Frame = -3
Query:  256 KFMDEYQAIMTK----KLGLPKYNK---QIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEA--WISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWA 735
            +F D Y A   +    KLGL +      Q+I  L   M   ++D T  FR L ++      PE      L+    D  K   +A     W+  Y   L    +S EER+A M   NP+YVLRNYL Q AID AE GD   V+ LL++M RPYD+Q G + +A   P WA
Sbjct:  342 RFRDTYLACDRRDTAAKLGLAECRDEDLQLIDALRALMRESEMDMTLTFRGLIDLS-----PEHPDPAQLRDAFYDEDKRLVDAPQLQQWLQRYAARLQQDPLSPEERRARMRLANPRYVLRNYLAQQAIDRAEQGDPSGVQELLEVMRRPYDDQHGRDAFAARRPDWA 505          
The following BLAST results are available for this feature:
BLAST of CN189422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
Y2395_RHOFD4.859e-1835.47UPF0061 protein Rfer_2395 OS=Rhodoferax ferrireduc... [more]
Y1931_VIBCH4.859e-1837.42UPF0061 protein VC_1931 OS=Vibrio cholerae GN=VC_1... [more]
Y2336_BURP01.414e-1734.52UPF0061 protein BURPS1106A_2336 OS=Burkholderia ps... [more]
Y2284_XANCP1.414e-1737.28UPF0061 protein XCC2284 OS=Xanthomonas campestris ... [more]
Y1894_XANCB1.414e-1737.28UPF0061 protein xcc-b100_1894 OS=Xanthomonas campe... [more]
Y1831_XANC81.414e-1737.28UPF0061 protein XC_1831 OS=Xanthomonas campestris ... [more]
Y1045_ALHEH1.414e-1738.71UPF0061 protein Mlg_1045 OS=Alkalilimnicola ehrlic... [more]
Y2277_BORA12.411e-1737.95UPF0061 protein BAV2277 OS=Bordetella avium (strai... [more]
Y2155_BURXL3.149e-1735.12UPF0061 protein Bxeno_A2155 OS=Burkholderia xenovo... [more]
Y2589_XANC54.113e-1737.28UPF0061 protein XCV2589 OS=Xanthomonas campestris ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N08_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189422 ID=CN189422; Name=CN189422; organism=Citrus sinensis; type=EST; length=764bp
TTTTTTTTTTTTTTTAAATAAAAAATTGTAATAAATAAAATGATTTCGAA
ATGCATAAACTGTTAAAATTCTGCAAAGAAATAATGCCATACAAATTATT
TCTACTTTTTTCTGCAGCCACAAAAATAATAATAATAATAATGATTCGAC
TATTATATACATGAAGTTACAATCCTCTTTCTGGTATAGGTATAACATAA
TGCAGAGAATGGCAGATTACGATGAACAGGAAAGCATGCAAACACCTGGT
CGATAAGCCCATGCCGGGGGCAGGCGAGCATACTTTTCCATTCCTGGTTG
CTCGTCATATGGGCGTTCCATAAGTTTAAGCAACCTCCGCACCTCACCAA
AATCTCCGAGCTCAGCTGCATCGATAGCACTCTGGCACAAGTAGTTTCTA
AGAACATATTTTGGGTTCACAGAATTCATCAATGCCTTCCTTTCCTCATC
TGAGATGCCACTAGACAACAGCTCTTGTATGTACGATAACACCCAGCTGA
TCCATGCCTCCTTCCGCTCCTTTCCGATATCTAACAAAACAGCCTTCAGT
GGAACTAACAACTCATCCTCTGGAATGCTGGGATCAGCTTTGACATTGGA
AAGTGCACGAAAGAAATTTGTGTAATCAACTTTGTCAACAGCCATATTGT
TTAGAAGTTTACTAATAATCTGTTTATTGTATTTTGGAAGACCAAGTTTC
TTTGTCATAATGGCTTGATATTCATCCATAAACTTTGTTCCTATCTTTCC
ATGACATAATTTGC
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