CN189422

Overview
NameCN189422
Unique NameCN189422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y737_YERPP (UPF0061 protein YPDSF_0737 OS=Yersinia pestis (strain Pestoides F) GN=YPDSF_0737 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.482e-16
Identity = 54/160 (33.75%), Postives = 81/160 (50.62%), Query Frame = -3
Query:  259 MDEYQAIMTKKLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 729
            M  Y   M  KLG  + + Q   +++ LL+ M  +  DYT  FR LS V+   +        PL+   +D     + A+  W   Y   L    I D++R+  M + NPKY+LRNYL Q AI  AE  D   ++RL + +++P+ +QP  +  A LPP W
Sbjct:  329 MVAYGEQMRAKLGFLERDSQDNDLLTGLLSLMIKEGRDYTRTFRLLSEVEVHSAQS------PLRDDFID-----RAAFDDWYRRYRSRLQQESIDDDQRQQSMKAANPKYILRNYLAQQAITQAEKDDIQPLQRLHQALQQPFTDQPEFDDLAALPPDW 477          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y2581_POLSJ (UPF0061 protein Bpro_2581 OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=Bpro_2581 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.482e-16
Identity = 55/164 (33.54%), Postives = 85/164 (51.83%), Query Frame = -3
Query:  256 TKFMDEYQAIMTKKLGLPKY---NKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWA 738
            T F    +A M  KLGL +    ++++I      +A +KVDYT F+R L                 ++ +  D     +E++ +W L Y + +  +G+    R  LM   NPK+VLRN+L + AI AA+L DF  V  LL L++ P+DE PG + ++  PP WA
Sbjct:  337 TVFPQALEARMRDKLGLVETQAGDRELIESTFKLLASNKVDYTIFWRRLCGFTPQSGHES------VRDLFFD-----RESFNAWALQYSERV--AGVDQGVRANLMLKSNPKFVLRNHLGEEAIRAAKLKDFSGVNTLLGLLQAPFDEHPGHDSFSDFPPDWA 487          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y2396_YERPB (UPF0061 protein YPTS_2396 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=YPTS_2396 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.482e-16
Identity = 54/160 (33.75%), Postives = 81/160 (50.62%), Query Frame = -3
Query:  259 MDEYQAIMTKKLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 729
            M  Y   M  KLG  + + Q   +++ LL+ M  +  DYT  FR LS V+   +        PL+   +D     + A+  W   Y   L    I D++R+  M + NPKY+LRNYL Q AI  AE  D   ++RL + +++P+ +QP  +  A LPP W
Sbjct:  329 MVAYGEQMRAKLGFLERDSQDNDLLTGLLSLMIKEGRDYTRTFRLLSEVEVHSAQS------PLRDDFID-----RAAFDDWYRRYRSRLQQESIDDDQRQQSMKAANPKYILRNYLAQQAITQAEKDDIQPLQRLHQALQQPFTDQPEFDDLAALPPDW 477          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y2321_YERPS (UPF0061 protein YPTB2321 OS=Yersinia pseudotuberculosis GN=YPTB2321 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.482e-16
Identity = 54/160 (33.75%), Postives = 81/160 (50.62%), Query Frame = -3
Query:  259 MDEYQAIMTKKLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 729
            M  Y   M  KLG  + + Q   +++ LL+ M  +  DYT  FR LS V+   +        PL+   +D     + A+  W   Y   L    I D++R+  M + NPKY+LRNYL Q AI  AE  D   ++RL + +++P+ +QP  +  A LPP W
Sbjct:  329 MVAYGEQMRAKLGFLERDSQDNDLLTGLLSLMIKEGRDYTRTFRLLSEVEVHSAQS------PLRDDFID-----RAAFDDWYRRYRSRLQQESIDDDQRQQSMKAANPKYILRNYLAQQAITQAEKDDIQPLQRLHQALQQPFTDQPEFDDLAALPPDW 477          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y1840_YERPY (UPF0061 protein YPK_1840 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=YPK_1840 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.482e-16
Identity = 54/160 (33.75%), Postives = 81/160 (50.62%), Query Frame = -3
Query:  259 MDEYQAIMTKKLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 729
            M  Y   M  KLG  + + Q   +++ LL+ M  +  DYT  FR LS V+   +        PL+   +D     + A+  W   Y   L    I D++R+  M + NPKY+LRNYL Q AI  AE  D   ++RL + +++P+ +QP  +  A LPP W
Sbjct:  329 MVAYGEQMRAKLGFLERDSQDNDLLTGLLSLMIKEGRDYTRTFRLLSEVEVHSAQS------PLRDDFID-----RAAFDDWYRRYRSRLQQESIDDDQRQQSMKAANPKYILRNYLAQQAITQAEKDDIQPLQRLHQALQQPFTDQPEFDDLAALPPDW 477          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y1734_YERP3 (UPF0061 protein YpsIP31758_1734 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=YpsIP31758_1734 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.482e-16
Identity = 54/160 (33.75%), Postives = 81/160 (50.62%), Query Frame = -3
Query:  259 MDEYQAIMTKKLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 729
            M  Y   M  KLG  + + Q   +++ LL+ M  +  DYT  FR LS V+   +        PL+   +D     + A+  W   Y   L    I D++R+  M + NPKY+LRNYL Q AI  AE  D   ++RL + +++P+ +QP  +  A LPP W
Sbjct:  325 MVAYGEQMRAKLGFLERDSQDNDLLTGLLSLMIKEGRDYTRTFRLLSEVEVHSAQS------PLRDDFID-----RAAFDDWYRRYRSRLQQESIDDDQRQQSMKAANPKYILRNYLAQQAITQAEKDDIQPLQRLHQALQQPFTDQPEFDDLAALPPDW 473          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y1090_BORPE (UPF0061 protein BP1090 OS=Bordetella pertussis GN=BP1090 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.482e-16
Identity = 57/169 (33.73%), Postives = 81/169 (47.93%), Query Frame = -3
Query:  256 MDEYQAIMTK--------KLGLPKY---NKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWA 729
            +D Y+A+ T+        KLGLP++   ++ ++  LL  M     D+T  FR L         P ++  +             + A  +W         S G + + R A M+ VNP YVLRN+L + AI AA  GD GE+  LLKL+  PY  QPG + YA L P WA
Sbjct:  322 LDGYEAVFTQAFHGRMAGKLGLPQFLPEDETLLDDLLQLMHQQGADFTLAFRRLGEAVRGQRQPFEDSFID------------RAAAGAWYDRLAARHASDGRAAQARAAAMDEVNPLYVLRNHLAEQAIRAAARGDAGEIDILLKLLRNPYKHQPGYDAYAGLAPDWA 478          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: YDIU_SHIFL (UPF0061 protein ydiU OS=Shigella flexneri GN=ydiU PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.939e-16
Identity = 57/171 (33.33%), Postives = 85/171 (49.71%), Query Frame = -3
Query:  250 MDEYQAI--------MTKKLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYR 729
            +D YQ +        M +KLG     K+   ++++L + MA ++ DYT  FR LS  +      +     PL+   +D     + A+  W   Y   L    +SD ER+ LM SVNP  VLRN+L Q AI+AAE GD  E+ RL + +  P+ ++   + Y   PP W  R
Sbjct:  314 LDSYQQVLLTHYGQRMRQKLGFMTEQKEDNALLNELFSLMARERSDYTRTFRMLSLTE------QHSAASPLREEFID-----RAAFDDWFARYRGRLQQDEVSDSERQQLMQSVNPALVLRNWLAQRAIEAAEKGDMMELHRLHEALRNPFSDRD--DDYVSRPPDWGKR 471          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: YDIU_ECOSM (UPF0061 protein ydiU OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=ydiU PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.939e-16
Identity = 57/171 (33.33%), Postives = 86/171 (50.29%), Query Frame = -3
Query:  250 MDEYQAI--------MTKKLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYR 729
            +D YQ +        M +KLG     K+   ++++L + MA ++ DYT  FR LS  +      +     PL+   +D     + A+  W   Y + L    +SD ER+ LM SVNP  VLRN+L Q AI+AAE GD  E+ RL + +  P+ ++   + Y   PP W  R
Sbjct:  314 LDSYQQVLLTHYGQRMRQKLGFMTEQKEDNALLNELFSLMARERSDYTRTFRMLSLTE------QHSAASPLRDEFID-----RAAFDDWFARYRRRLQQDEVSDIERQQLMQSVNPALVLRNWLAQRAIEAAEKGDMTELHRLHEALRNPFSDRD--DDYVSRPPDWGKR 471          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: YDIU_ECOSE (UPF0061 protein ydiU OS=Escherichia coli (strain SE11) GN=ydiU PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.939e-16
Identity = 57/171 (33.33%), Postives = 85/171 (49.71%), Query Frame = -3
Query:  250 MDEYQAI--------MTKKLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYR 729
            +D YQ +        M +KLG     K+   ++++L + MA ++ DYT  FR LS  +      +     PL+   +D     + A+  W   Y   L    +SD ER+ LM SVNP  VLRN+L Q AI+AAE GD  E+ RL + +  P+ ++   + Y   PP W  R
Sbjct:  314 LDSYQQVLLTHYGQRMRQKLGFMTEQKEDNALLNELFSLMARERSDYTRTFRMLSLTE------QHSAASPLRDEFID-----RAAFDDWFARYRGRLQQDEVSDSERQQLMQSVNPALVLRNWLAQRAIEAAEKGDMTELHRLHEALRNPFSDR--ADDYVSRPPDWGKR 471          
The following BLAST results are available for this feature:
BLAST of CN189422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
Y737_YERPP3.482e-1633.75UPF0061 protein YPDSF_0737 OS=Yersinia pestis (str... [more]
Y2581_POLSJ3.482e-1633.54UPF0061 protein Bpro_2581 OS=Polaromonas sp. (stra... [more]
Y2396_YERPB3.482e-1633.75UPF0061 protein YPTS_2396 OS=Yersinia pseudotuberc... [more]
Y2321_YERPS3.482e-1633.75UPF0061 protein YPTB2321 OS=Yersinia pseudotubercu... [more]
Y1840_YERPY3.482e-1633.75UPF0061 protein YPK_1840 OS=Yersinia pseudotubercu... [more]
Y1734_YERP33.482e-1633.75UPF0061 protein YpsIP31758_1734 OS=Yersinia pseudo... [more]
Y1090_BORPE3.482e-1633.73UPF0061 protein BP1090 OS=Bordetella pertussis GN=... [more]
YDIU_SHIFL5.939e-1633.33UPF0061 protein ydiU OS=Shigella flexneri GN=ydiU ... [more]
YDIU_ECOSM5.939e-1633.33UPF0061 protein ydiU OS=Escherichia coli (strain S... [more]
YDIU_ECOSE5.939e-1633.33UPF0061 protein ydiU OS=Escherichia coli (strain S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N08_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189422 ID=CN189422; Name=CN189422; organism=Citrus sinensis; type=EST; length=764bp
TTTTTTTTTTTTTTTAAATAAAAAATTGTAATAAATAAAATGATTTCGAA
ATGCATAAACTGTTAAAATTCTGCAAAGAAATAATGCCATACAAATTATT
TCTACTTTTTTCTGCAGCCACAAAAATAATAATAATAATAATGATTCGAC
TATTATATACATGAAGTTACAATCCTCTTTCTGGTATAGGTATAACATAA
TGCAGAGAATGGCAGATTACGATGAACAGGAAAGCATGCAAACACCTGGT
CGATAAGCCCATGCCGGGGGCAGGCGAGCATACTTTTCCATTCCTGGTTG
CTCGTCATATGGGCGTTCCATAAGTTTAAGCAACCTCCGCACCTCACCAA
AATCTCCGAGCTCAGCTGCATCGATAGCACTCTGGCACAAGTAGTTTCTA
AGAACATATTTTGGGTTCACAGAATTCATCAATGCCTTCCTTTCCTCATC
TGAGATGCCACTAGACAACAGCTCTTGTATGTACGATAACACCCAGCTGA
TCCATGCCTCCTTCCGCTCCTTTCCGATATCTAACAAAACAGCCTTCAGT
GGAACTAACAACTCATCCTCTGGAATGCTGGGATCAGCTTTGACATTGGA
AAGTGCACGAAAGAAATTTGTGTAATCAACTTTGTCAACAGCCATATTGT
TTAGAAGTTTACTAATAATCTGTTTATTGTATTTTGGAAGACCAAGTTTC
TTTGTCATAATGGCTTGATATTCATCCATAAACTTTGTTCCTATCTTTCC
ATGACATAATTTGC
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