CN189422

Overview
NameCN189422
Unique NameCN189422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189422_ssr125 microsatellite CN189422_ssr125:125..142. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig283 contig Csv1_Contig283:5..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: YDIU_ECOLI (UPF0061 protein ydiU OS=Escherichia coli (strain K12) GN=ydiU PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.939e-16
Identity = 57/171 (33.33%), Postives = 85/171 (49.71%), Query Frame = -3 
Query:  250 MDEYQAI--------MTKKLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYR 729
            +D YQ +        M +KLG     K+   ++++L + MA ++ DYT  FR LS  +      +     PL+   +D     + A+  W   Y   L    +SD ER+ LM SVNP  VLRN+L Q AI+AAE GD  E+ RL + +  P+ ++   + Y   PP W  R
Sbjct:  314 LDSYQQVLLTHYGERMRQKLGFMTEQKEDNALLNELFSLMARERSDYTRTFRMLSLTE------QHSAASPLRDEFID-----RAAFDDWFARYRGRLQQDEVSDSERQQLMQSVNPALVLRNWLAQRAIEAAEKGDMTELHRLHEALRNPFSDRD--DDYVSRPPDWGKR 471
[Close]
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: YDIU_ECOHS (UPF0061 protein ydiU OS=Escherichia coli O9:H4 (strain HS) GN=ydiU PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.939e-16
Identity = 57/171 (33.33%), Postives = 85/171 (49.71%), Query Frame = -3 
Query:  250 MDEYQAI--------MTKKLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYR 729
            +D YQ +        M +KLG     K+   ++++L + MA ++ DYT  FR LS  +      +     PL+   +D     + A+  W   Y   L    +SD ER+ LM SVNP  VLRN+L Q AI+AAE GD  E+ RL + +  P+ ++   + Y   PP W  R
Sbjct:  314 LDSYQQVLLTHYGERMRQKLGFMTEQKEDNALLNELFSLMARERSDYTRTFRMLSLTE------QHSAASPLRDEFID-----RAAFDDWFARYRGRLQQDEVSDSERQQLMQSVNPALVLRNWLAQRAIEAAEKGDMTELHRLHEALRNPFSDRD--DDYVSRPPDWGKR 471
[Close]
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: YDIU_ECODH (UPF0061 protein ydiU OS=Escherichia coli (strain K12 / DH10B) GN=ydiU PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.939e-16
Identity = 57/171 (33.33%), Postives = 85/171 (49.71%), Query Frame = -3 
Query:  250 MDEYQAI--------MTKKLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYR 729
            +D YQ +        M +KLG     K+   ++++L + MA ++ DYT  FR LS  +      +     PL+   +D     + A+  W   Y   L    +SD ER+ LM SVNP  VLRN+L Q AI+AAE GD  E+ RL + +  P+ ++   + Y   PP W  R
Sbjct:  314 LDSYQQVLLTHYGERMRQKLGFMTEQKEDNALLNELFSLMARERSDYTRTFRMLSLTE------QHSAASPLRDEFID-----RAAFDDWFARYRGRLQQDEVSDSERQQLMQSVNPALVLRNWLAQRAIEAAEKGDMTELHRLHEALRNPFSDRD--DDYVSRPPDWGKR 471
[Close]
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: YDIU_ECOBW (UPF0061 protein ydiU OS=Escherichia coli (strain K12 / BW2952) GN=ydiU PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.939e-16
Identity = 57/171 (33.33%), Postives = 85/171 (49.71%), Query Frame = -3 
Query:  250 MDEYQAI--------MTKKLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYR 729
            +D YQ +        M +KLG     K+   ++++L + MA ++ DYT  FR LS  +      +     PL+   +D     + A+  W   Y   L    +SD ER+ LM SVNP  VLRN+L Q AI+AAE GD  E+ RL + +  P+ ++   + Y   PP W  R
Sbjct:  314 LDSYQQVLLTHYGERMRQKLGFMTEQKEDNALLNELFSLMARERSDYTRTFRMLSLTE------QHSAASPLRDEFID-----RAAFDDWFARYRGRLQQDEVSDSERQQLMQSVNPALVLRNWLAQRAIEAAEKGDMTELHRLHEALRNPFSDRD--DDYVSRPPDWGKR 471
[Close]
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: YDIU_ECO5E (UPF0061 protein ydiU OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=ydiU PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.939e-16
Identity = 57/171 (33.33%), Postives = 85/171 (49.71%), Query Frame = -3 
Query:  250 MDEYQAI--------MTKKLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYR 729
            +D YQ +        M +KLG     K+   ++++L + MA ++ DYT  FR LS  +      +     PL+   +D     + A+  W   Y   L    +SD ER+ LM SVNP  VLRN+L Q AI+AAE GD  E+ RL + +  P+ ++   + Y   PP W  R
Sbjct:  314 LDSYQQVLLTHYGQRMRQKLGFMTEQKEDNALLNELFSLMARERSDYTRTFRMLSLTE------QHSAASPLRDEFID-----RAAFDDWFARYRGRLQQDEVSDSERQQLMQSVNPALVLRNWLAQRAIEAAEKGDMTELHRLHEALRNPFSDRD--DDYVSRPPDWGKR 471
[Close]
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: YDIU_ECO57 (UPF0061 protein ydiU OS=Escherichia coli O157:H7 GN=ydiU PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.939e-16
Identity = 57/171 (33.33%), Postives = 85/171 (49.71%), Query Frame = -3 
Query:  250 MDEYQAI--------MTKKLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYR 729
            +D YQ +        M +KLG     K+   ++++L + MA ++ DYT  FR LS  +      +     PL+   +D     + A+  W   Y   L    +SD ER+ LM SVNP  VLRN+L Q AI+AAE GD  E+ RL + +  P+ ++   + Y   PP W  R
Sbjct:  314 LDSYQQVLLTHYGQRMRQKLGFMTEQKEDNALLNELFSLMARERSDYTRTFRMLSLTE------QHSAASPLRDEFID-----RAAFDDWFARYRGRLQQDEVSDSERQQLMQSVNPALVLRNWLAQRAIEAAEKGDMTELHRLHEALRNPFSDRD--DDYVSRPPDWGKR 471
[Close]
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: YDIU_ECO55 (UPF0061 protein ydiU OS=Escherichia coli (strain 55989 / EAEC) GN=ydiU PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.939e-16
Identity = 57/171 (33.33%), Postives = 86/171 (50.29%), Query Frame = -3 
Query:  250 MDEYQAI--------MTKKLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYR 729
            +D YQ +        M +KLG     K+   ++++L + MA ++ DYT  FR LS  +      +     PL+   +D     + A+  W   Y + L    +SD ER+ LM SVNP  VLRN+L Q AI+AAE GD  E+ RL + +  P+ ++   + Y   PP W  R
Sbjct:  314 LDSYQQVLLTHYGQRMRQKLGFMTEQKEDNALLNELFSLMARERSDYTRTFRMLSLTE------QHSAASPLRDEFID-----RAAFDDWFARYRRRLQQDEVSDIERQQLMQSVNPALVLRNWLAQRAIEAAEKGDMTELHRLHEALRNPFSDR--ADDYVSRPPDWGKR 471
[Close]
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: YDIU_ECO24 (UPF0061 protein ydiU OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=ydiU PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.939e-16
Identity = 57/171 (33.33%), Postives = 85/171 (49.71%), Query Frame = -3 
Query:  250 MDEYQAI--------MTKKLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYR 729
            +D YQ +        M +KLG     K+   ++++L + MA ++ DYT  FR LS  +      +     PL+   +D     + A+  W   Y   L    +SD ER+ LM SVNP  VLRN+L Q AI+AAE GD  E+ RL + +  P+ ++   + Y   PP W  R
Sbjct:  314 LDSYQQVLLTHYGQRMRQKLGFMTEQKEDNALLNELFSLMARERSDYTRTFRMLSLTE------QHSAASPLRDEFID-----RAAFDDWFARYRGRLQQDEVSDSERQQLMQSVNPALVLRNWLAQRAIEAAEKGDMTELHRLHEALRNPFSDRD--DDYVSRPPDWGKR 471
[Close]
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y3040_BORPD (UPF0061 protein Bpet3040 OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=Bpet3040 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.939e-16
Identity = 61/171 (35.67%), Postives = 92/171 (53.80%), Query Frame = -3 
Query:  256 MDEYQAIMTK--------KLGLPKY---NKQIISKLLNNMAVDKVDYTNFFRALSN-VKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLS-YIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWA 729
            +D Y+ I T+        KLGL ++   ++ ++  LL  M  ++ D+T  FR L++ V+  P   +D          L I ++   AW   + + + QE   +G   + R A M++VNP YVLRN+L + AI AA+ GD GE+  LL L+  P  EQPG + YA LPP WA
Sbjct:  330 LDSYEVIFTRAFHQRMAAKLGLREWRADDEPLLDDLLRLMHDNRADFTLTFRRLADAVRGRPQGLQD----------LFIDRDAALAWFERLAARHAQE--GAGNDAQARAAGMDAVNPLYVLRNHLAEQAIRAAKAGDAGEIDTLLALLRDPCVEQPGRDAYAALPPDWA 488
[Close]
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y1736_ENT38 (UPF0061 protein Ent638_1736 OS=Enterobacter sp. (strain 638) GN=Ent638_1736 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.939e-16
Identity = 55/163 (33.74%), Postives = 81/163 (49.69%), Query Frame = -3 
Query:  250 MDEYQAIMTKKLGL---PKYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYR 729
            M EY  +M +KLGL    K +  I++ L   M+ +  DYT  FR L   +   +        PL+   +D     ++ + SW  +Y   L      D+ R A MN+VNP  VLRN+L Q AID AE GD+ E+ RL   +  P++++   + Y   PP W  R
Sbjct:  324 MQEYGKLMRRKLGLMTQEKGDNDILNALFALMSREGSDYTRTFRMLGQTEKHSAAS------PLRDEFID-----RQGFDSWFATYRARLQREETPDDARNAHMNAVNPAMVLRNWLAQRAIDQAEQGDYAELHRLHDALRTPFNDRD--DDYVSRPPDWGKR 473
The following BLAST results are available for this feature:
BLAST of CN189422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
YDIU_ECOLI5.939e-1633.33UPF0061 protein ydiU OS=Escherichia coli (strain K... [more]
YDIU_ECOHS5.939e-1633.33UPF0061 protein ydiU OS=Escherichia coli O9:H4 (st... [more]
YDIU_ECODH5.939e-1633.33UPF0061 protein ydiU OS=Escherichia coli (strain K... [more]
YDIU_ECOBW5.939e-1633.33UPF0061 protein ydiU OS=Escherichia coli (strain K... [more]
YDIU_ECO5E5.939e-1633.33UPF0061 protein ydiU OS=Escherichia coli O157:H7 (... [more]
YDIU_ECO575.939e-1633.33UPF0061 protein ydiU OS=Escherichia coli O157:H7 G... [more]
YDIU_ECO555.939e-1633.33UPF0061 protein ydiU OS=Escherichia coli (strain 5... [more]
YDIU_ECO245.939e-1633.33UPF0061 protein ydiU OS=Escherichia coli O139:H28 ... [more]
Y3040_BORPD5.939e-1635.67UPF0061 protein Bpet3040 OS=Bordetella petrii (str... [more]
Y1736_ENT385.939e-1633.74UPF0061 protein Ent638_1736 OS=Enterobacter sp. (s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001N08_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189422 ID=CN189422; Name=CN189422; organism=Citrus sinensis; type=EST; length=764bp
TTTTTTTTTTTTTTTAAATAAAAAATTGTAATAAATAAAATGATTTCGAA
ATGCATAAACTGTTAAAATTCTGCAAAGAAATAATGCCATACAAATTATT
TCTACTTTTTTCTGCAGCCACAAAAATAATAATAATAATAATGATTCGAC
TATTATATACATGAAGTTACAATCCTCTTTCTGGTATAGGTATAACATAA
TGCAGAGAATGGCAGATTACGATGAACAGGAAAGCATGCAAACACCTGGT
CGATAAGCCCATGCCGGGGGCAGGCGAGCATACTTTTCCATTCCTGGTTG
CTCGTCATATGGGCGTTCCATAAGTTTAAGCAACCTCCGCACCTCACCAA
AATCTCCGAGCTCAGCTGCATCGATAGCACTCTGGCACAAGTAGTTTCTA
AGAACATATTTTGGGTTCACAGAATTCATCAATGCCTTCCTTTCCTCATC
TGAGATGCCACTAGACAACAGCTCTTGTATGTACGATAACACCCAGCTGA
TCCATGCCTCCTTCCGCTCCTTTCCGATATCTAACAAAACAGCCTTCAGT
GGAACTAACAACTCATCCTCTGGAATGCTGGGATCAGCTTTGACATTGGA
AAGTGCACGAAAGAAATTTGTGTAATCAACTTTGTCAACAGCCATATTGT
TTAGAAGTTTACTAATAATCTGTTTATTGTATTTTGGAAGACCAAGTTTC
TTTGTCATAATGGCTTGATATTCATCCATAAACTTTGTTCCTATCTTTCC
ATGACATAATTTGC
back to top