CN189408
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS6B_MACFA (26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4 PE=2 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.573e-31 Identity = 70/151 (46.36%), Postives = 94/151 (62.25%), Query Frame = -2 Query: 274 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 726 IDAI TKRFD++ DREVQR +LELLNQ+DGF + +KVI ATNRAD LDPAL+R GRLDRKIE P P + I + KM + +V+ E+ D +GA + ++C E+GMLA+R + V +DF + V K + +Y Sbjct: 267 IDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFY 417
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS6B_HUMAN (26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1 SV=2) HSP 1 Score: 136.346 bits (342), Expect = 1.573e-31 Identity = 70/151 (46.36%), Postives = 94/151 (62.25%), Query Frame = -2 Query: 274 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 726 IDAI TKRFD++ DREVQR +LELLNQ+DGF + +KVI ATNRAD LDPAL+R GRLDRKIE P P + I + KM + +V+ E+ D +GA + ++C E+GMLA+R + V +DF + V K + +Y Sbjct: 267 IDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFY 417
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS6B_BOVIN (26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.573e-31 Identity = 70/151 (46.36%), Postives = 94/151 (62.25%), Query Frame = -2 Query: 274 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 726 IDAI TKRFD++ DREVQR +LELLNQ+DGF + +KVI ATNRAD LDPAL+R GRLDRKIE P P + I + KM + +V+ E+ D +GA + ++C E+GMLA+R + V +DF + V K + +Y Sbjct: 267 IDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFY 417
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PSMR_THEGJ (Proteasome-activating nucleotidase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.683e-31 Identity = 71/145 (48.97%), Postives = 95/145 (65.52%), Query Frame = -2 Query: 292 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 726 IDAIG KR D G+REV RT+++LL ++DGF +KVIAATNR DILDPAL+R GR DR IE+P P R IL++H+RKM + +V+ +A T+ +GA LKA+ EAGM A+R T V EDF + + +V +K Sbjct: 240 IDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFRGRLEILKVHTRKMNLR-NVDLSIIADITEGASGADLKAIATEAGMFAIRDRRTYVTQEDFLKAVDKVLGAEK 383
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PSMR_PYRKO (Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis GN=pan PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.683e-31 Identity = 70/145 (48.28%), Postives = 95/145 (65.52%), Query Frame = -2 Query: 292 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 726 IDAIG KR D G+REV RT+++LL ++DGF +KVIAATNR DILDPAL+R GR DR IE+P P + R IL++H+RKM + V+ +A T+ +GA LKA+ EAGM A+R T V +DF + + +V +K Sbjct: 240 IDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDYQGRLEILKVHTRKMNL-KGVDLRVIAEITEGASGADLKAIATEAGMFAIRDRRTYVTQDDFLKAVDKVIGSEK 383
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS7_YEAST (26S protease regulatory subunit 7 homolog OS=Saccharomyces cerevisiae GN=RPT1 PE=1 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.683e-31 Identity = 72/153 (47.06%), Postives = 98/153 (64.05%), Query Frame = -2 Query: 274 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA--KKKASLNYY 726 IDA+G RFD GD EVQRTMLEL+ QLDGF IKV+ ATNR + LDPAL+R GR+DRK+E P E RA I +IHS+ M+V + +E ++R + GA+L++VC EAGM A+R +DF + + +V + KK +S + Y Sbjct: 311 IDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSSTSRY 463
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS6B_MOUSE (26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 5.976e-31 Identity = 70/151 (46.36%), Postives = 92/151 (60.93%), Query Frame = -2 Query: 274 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 726 IDAI TKRFD++ DREVQR +LELLNQ+DGF + +KVI ATNRAD LDPAL+R GRLDRKIE P P + I + KM + +V+ E+ D +GA + ++C GMLA+R A V +DF + V K + +Y Sbjct: 267 IDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQARGMLAVRETAYIVLAKDFEKAYKTVIKKDEQEHEFY 417
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS6B_ARATH (26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 5.976e-31 Identity = 66/151 (43.71%), Postives = 93/151 (61.59%), Query Frame = -2 Query: 274 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 726 +DAI T RFD++ DREVQR ++ELLNQ+DGF +KVI ATNRAD LDPAL+R GRLDRKIE P P + + Q+ + KM + +V+ E+ D + A++ A+C EAGM A+R++ + +DF +G K +Y Sbjct: 257 VDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTSKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRANVKKPDTDFEFY 407
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS6B_SOLTU (26S protease regulatory subunit 6B homolog OS=Solanum tuberosum PE=2 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 7.805e-31 Identity = 66/151 (43.71%), Postives = 93/151 (61.59%), Query Frame = -2 Query: 274 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 726 +DAI T RFD++ DREVQR ++ELLNQ+DGF +KVI ATNRAD LDPAL+R GRLDRKIE P P + + Q+ + KM + +V+ E+ D + A++ A+C EAGM A+R++ + +DF +G K +Y Sbjct: 262 VDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLGDEVDLEDYVSRPDKISAAEITAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 412
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PSMR_THEON (Proteasome-activating nucleotidase OS=Thermococcus onnurineus (strain NA1) GN=pan PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.966e-30 Identity = 68/140 (48.57%), Postives = 95/140 (67.86%), Query Frame = -2 Query: 307 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 726 IDAIG KR D G+REV RT+++LL ++DGF +K+IAATNR DILDPAL+R GR DR IE+P P+ ++R IL+IH+++M + V+ +A T+ +GA LKA+ +EAGM A+R V EDF + I +V Sbjct: 241 IDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPSGNVKIIAATNRPDILDPALLRPGRFDRLIEVPLPNFKSRLEILKIHTKRMNL-KGVDLRIIAEMTEGASGADLKAITMEAGMFAIRDRREYVTQEDFLKAIEKV 379 The following BLAST results are available for this feature:
BLAST of CN189408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 293
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Sequences
The
following sequences are available for this feature:
EST sequence >CN189408 ID=CN189408; Name=CN189408; organism=Citrus sinensis; type=EST; length=727bpback to top |