CN189408

Overview
NameCN189408
Unique NameCN189408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS6B_MACFA (26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.573e-31
Identity = 70/151 (46.36%), Postives = 94/151 (62.25%), Query Frame = -2
Query:  274 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 726
            IDAI TKRFD++   DREVQR +LELLNQ+DGF  +  +KVI ATNRAD LDPAL+R GRLDRKIE P P    +  I    + KM +  +V+ E+     D  +GA + ++C E+GMLA+R +   V  +DF +    V  K +    +Y
Sbjct:  267 IDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFY 417          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS6B_HUMAN (26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.573e-31
Identity = 70/151 (46.36%), Postives = 94/151 (62.25%), Query Frame = -2
Query:  274 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 726
            IDAI TKRFD++   DREVQR +LELLNQ+DGF  +  +KVI ATNRAD LDPAL+R GRLDRKIE P P    +  I    + KM +  +V+ E+     D  +GA + ++C E+GMLA+R +   V  +DF +    V  K +    +Y
Sbjct:  267 IDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFY 417          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS6B_BOVIN (26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.573e-31
Identity = 70/151 (46.36%), Postives = 94/151 (62.25%), Query Frame = -2
Query:  274 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 726
            IDAI TKRFD++   DREVQR +LELLNQ+DGF  +  +KVI ATNRAD LDPAL+R GRLDRKIE P P    +  I    + KM +  +V+ E+     D  +GA + ++C E+GMLA+R +   V  +DF +    V  K +    +Y
Sbjct:  267 IDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFY 417          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PSMR_THEGJ (Proteasome-activating nucleotidase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.683e-31
Identity = 71/145 (48.97%), Postives = 95/145 (65.52%), Query Frame = -2
Query:  292 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 726
            IDAIG KR D    G+REV RT+++LL ++DGF     +KVIAATNR DILDPAL+R GR DR IE+P P    R  IL++H+RKM +  +V+   +A  T+  +GA LKA+  EAGM A+R   T V  EDF + + +V   +K
Sbjct:  240 IDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFRGRLEILKVHTRKMNLR-NVDLSIIADITEGASGADLKAIATEAGMFAIRDRRTYVTQEDFLKAVDKVLGAEK 383          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PSMR_PYRKO (Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis GN=pan PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.683e-31
Identity = 70/145 (48.28%), Postives = 95/145 (65.52%), Query Frame = -2
Query:  292 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 726
            IDAIG KR D    G+REV RT+++LL ++DGF     +KVIAATNR DILDPAL+R GR DR IE+P P  + R  IL++H+RKM +   V+   +A  T+  +GA LKA+  EAGM A+R   T V  +DF + + +V   +K
Sbjct:  240 IDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDYQGRLEILKVHTRKMNL-KGVDLRVIAEITEGASGADLKAIATEAGMFAIRDRRTYVTQDDFLKAVDKVIGSEK 383          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS7_YEAST (26S protease regulatory subunit 7 homolog OS=Saccharomyces cerevisiae GN=RPT1 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.683e-31
Identity = 72/153 (47.06%), Postives = 98/153 (64.05%), Query Frame = -2
Query:  274 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA--KKKASLNYY 726
            IDA+G  RFD    GD EVQRTMLEL+ QLDGF     IKV+ ATNR + LDPAL+R GR+DRK+E   P  E RA I +IHS+ M+V   + +E ++R   +  GA+L++VC EAGM A+R        +DF + + +V +  KK +S + Y
Sbjct:  311 IDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSSTSRY 463          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS6B_MOUSE (26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.976e-31
Identity = 70/151 (46.36%), Postives = 92/151 (60.93%), Query Frame = -2
Query:  274 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 726
            IDAI TKRFD++   DREVQR +LELLNQ+DGF  +  +KVI ATNRAD LDPAL+R GRLDRKIE P P    +  I    + KM +  +V+ E+     D  +GA + ++C   GMLA+R  A  V  +DF +    V  K +    +Y
Sbjct:  267 IDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQARGMLAVRETAYIVLAKDFEKAYKTVIKKDEQEHEFY 417          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS6B_ARATH (26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.976e-31
Identity = 66/151 (43.71%), Postives = 93/151 (61.59%), Query Frame = -2
Query:  274 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 726
            +DAI T RFD++   DREVQR ++ELLNQ+DGF     +KVI ATNRAD LDPAL+R GRLDRKIE P P    +  + Q+ + KM +  +V+ E+     D  + A++ A+C EAGM A+R++   +  +DF +G      K      +Y
Sbjct:  257 VDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTSKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRANVKKPDTDFEFY 407          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS6B_SOLTU (26S protease regulatory subunit 6B homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.805e-31
Identity = 66/151 (43.71%), Postives = 93/151 (61.59%), Query Frame = -2
Query:  274 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 726
            +DAI T RFD++   DREVQR ++ELLNQ+DGF     +KVI ATNRAD LDPAL+R GRLDRKIE P P    +  + Q+ + KM +  +V+ E+     D  + A++ A+C EAGM A+R++   +  +DF +G      K      +Y
Sbjct:  262 VDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLGDEVDLEDYVSRPDKISAAEITAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 412          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PSMR_THEON (Proteasome-activating nucleotidase OS=Thermococcus onnurineus (strain NA1) GN=pan PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.966e-30
Identity = 68/140 (48.57%), Postives = 95/140 (67.86%), Query Frame = -2
Query:  307 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 726
            IDAIG KR D    G+REV RT+++LL ++DGF     +K+IAATNR DILDPAL+R GR DR IE+P P+ ++R  IL+IH+++M +   V+   +A  T+  +GA LKA+ +EAGM A+R     V  EDF + I +V
Sbjct:  241 IDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPSGNVKIIAATNRPDILDPALLRPGRFDRLIEVPLPNFKSRLEILKIHTKRMNL-KGVDLRIIAEMTEGASGADLKAITMEAGMFAIRDRREYVTQEDFLKAIEKV 379          
The following BLAST results are available for this feature:
BLAST of CN189408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
PRS6B_MACFA1.573e-3146.3626S protease regulatory subunit 6B OS=Macaca fasci... [more]
PRS6B_HUMAN1.573e-3146.3626S protease regulatory subunit 6B OS=Homo sapiens... [more]
PRS6B_BOVIN1.573e-3146.3626S protease regulatory subunit 6B OS=Bos taurus G... [more]
PSMR_THEGJ2.683e-3148.97Proteasome-activating nucleotidase OS=Thermococcus... [more]
PSMR_PYRKO2.683e-3148.28Proteasome-activating nucleotidase OS=Pyrococcus k... [more]
PRS7_YEAST2.683e-3147.0626S protease regulatory subunit 7 homolog OS=Sacch... [more]
PRS6B_MOUSE5.976e-3146.3626S protease regulatory subunit 6B OS=Mus musculus... [more]
PRS6B_ARATH5.976e-3143.7126S protease regulatory subunit 6B homolog OS=Arab... [more]
PRS6B_SOLTU7.805e-3143.7126S protease regulatory subunit 6B homolog OS=Sola... [more]
PSMR_THEON2.966e-3048.57Proteasome-activating nucleotidase OS=Thermococcus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001M24_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189408 ID=CN189408; Name=CN189408; organism=Citrus sinensis; type=EST; length=727bp
TTTTTTTTTTTTTTTTTATGGTACCGTCGCATTTCCTTTCCATCAACATA
CATCCTCTAACACGAGTAAAAATATCTCAAGAGTAACAGTTTGACTTTCA
TCACATTAAAAAAAATTATCACGCGGCTGACTTGGGAGTTTCACTTCTTA
TTATAACATATTATGTACAGTACAAAGACAATGTTTAATACCCATTTTTT
AATATTCAACCCAAAATATATTAATTACCAATTGAAGTAGAGGCTAAAAC
TTCGCCTTTGGATGTGTCTATGCATAGTAGTTTAAGCTAGCCTTTTTCTT
AGCCTGCACCTGAATGATACCTTCATTGAAATCCTCATGGTTGACCTCAG
TCGCATCACGGCGAAGAGCAAGCATCCCTGCTTCAACACAAACAGCTTTT
AGTTGTGCCCCATTGAAATCGTCAGTGGATCGAGCAAGTTCTTCGAAGTT
GACATCCGGGTGAACAGTCATCTTCCTCGAATGGATTTGCAAAATGCGAG
CTCTAGCTTCCTCACTCGGATGTGGTAACTCGATCTTGCGATCCAAACGG
CCAGATCGCATAAGAGCAGGGTCCAGGATATCAGCACGATTTGTTGCTGC
TATGACCTTAATCCGATCATCGCTGCTAAATCCATCGAGCTGATTGAGCA
ACTCTAACATAGTTCGCTGCACCTCCCTGTCTCCACTCACTTCACTGTCA
AACCGCTTTGTACCAATTGCGTCAATT
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