CN189408

Overview
NameCN189408
Unique NameCN189408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS6B_ENCCU (26S protease regulatory subunit 6B homolog OS=Encephalitozoon cuniculi GN=ECU08_1970 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.874e-30
Identity = 66/151 (43.71%), Postives = 91/151 (60.26%), Query Frame = -2
Query:  274 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 726
            +D+I TKRFD+  S DREVQR ++ELLNQ+DGF     +KVI ATNRAD +DPAL+R GRLDRKIE P P    +  +    + KM+++  V+ E L    +  + A + ++C EAGMLA+R     V   DF E   +V  +      +Y
Sbjct:  236 VDSIATKRFDASTSADREVQRVLIELLNQMDGFDPAANVKVIMATNRADTIDPALLRPGRLDRKIEFPLPDRRQKRLVFNAITSKMSLNDSVDIESLVCRPEKISCADINSICQEAGMLAVRASRYMVTQRDFEEAYSKVVERSGTQPAFY 386          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS6B_CAEEL (Probable 26S protease regulatory subunit 6B OS=Caenorhabditis elegans GN=rpt-3 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.059e-30
Identity = 67/151 (44.37%), Postives = 88/151 (58.28%), Query Frame = -2
Query:  274 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 726
            IDAI TKRFD++   DREVQR +LELLNQ+DGF     +KVI ATNR D LDPAL+R GRLDRKIE P P    +  +      +M +  DV+ E+     D  +GA + ++C EAGM A+R +   V  +D  +    V  K      +Y
Sbjct:  263 IDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTVCSRMNLSDDVDLEDWVARPDKISGADINSICQEAGMQAVRENRYVVLTKDLEKAYKNVVKKDTNDFEFY 413          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS6B_SCHPO (26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces pombe GN=rpt3 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.184e-28
Identity = 67/153 (43.79%), Postives = 92/153 (60.13%), Query Frame = -2
Query:  271 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELP-HPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 726
            IDAI TKRFD++   DREVQR ++ELL Q+DGF     +KVI ATNRAD LDPAL+R GRLDRKIE P +     R  + Q  + KM + P+V+ +      D  +GAQ+ A+  +AG+LA+R+    +   D  E     +A K   +  +A
Sbjct:  236 IDAIATKRFDAQTGADREVQRILIELLTQMDGFDQGANVKVIMATNRADTLDPALLRPGRLDRKIEFPSYRDRRQRRLVFQTITAKMLLSPEVDLDTFIMRPDASSGAQIAAIMQDAGLLAVRKSRGVILQSDIEEA--YARAVKPTDMEQFA 386          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS6B_ASPNG (26S protease regulatory subunit 6B homolog OS=Aspergillus niger GN=tbpA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.350e-27
Identity = 63/125 (50.40%), Postives = 84/125 (67.20%), Query Frame = -2
Query:  355 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARAR-ILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD 726
            IDAI TKRFD++   DREVQR +LELLNQ+DGF     +KVI ATNRAD LDPAL+R GRLDRKIE P   +    R I    + KM++ P+V+ + L    +  +GA + A+  EAG+ A+R++
Sbjct:  268 IDAIATKRFDAQTGADREVQRILLELLNQMDGFEQSSNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFSTIASKMSLSPEVDLDSLIVRNEPLSGAVIAAIMQEAGLRAVRKN 392          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS6B_YEAST (26S protease regulatory subunit 6B homolog OS=Saccharomyces cerevisiae GN=RPT3 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.166e-26
Identity = 61/136 (44.85%), Postives = 86/136 (63.24%), Query Frame = -2
Query:  322 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARAR-ILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNE 726
            +D+I TKRFD++   DREVQR ++ELL Q+DGF     +KVI ATNRAD LDPAL+R GRLDRKIE P+  +    R I    + KM++ P+ + + L    D  +GA + A+  EAG+ A+R++   +   D  E
Sbjct:  274 VDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPYLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEE 409          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH_CAPAN (Cell division protease ftsH homolog, chloroplastic (Fragment) OS=Capsicum annuum GN=FTSH PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.200e-25
Identity = 57/142 (40.14%), Postives = 93/142 (65.49%), Query Frame = -2
Query:  301 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 726
            IDA+G +R      G+ E ++T+ +LL ++DGFS +  + V+AATNR D+LD AL+R G+ DR++ +  P    R RILQ+HSR   +  DV+F+++AR T  F GA L+ +  EA +LA RRD  E++ ++ ++ + ++ A
Sbjct:  331 IDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGKFDRQVTVDRPDVAGRVRILQVHSRGKALAKDVDFDKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIA 472          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH1_ORYSJ (Cell division protease ftsH homolog 1, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.900e-25
Identity = 56/142 (39.44%), Postives = 93/142 (65.49%), Query Frame = -2
Query:  301 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 726
            IDA+G +R      G+ E ++T+ +LL ++DGF+ +  + V+AATNR D+LD AL+R GR DR++ +  P    R +IL++HSR   +  DV+FE++AR T  F GA L+ +  EA +LA RRD  E++ ++ ++ + ++ A
Sbjct:  333 IDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFAGNSGVIVLAATNRPDVLDAALLRPGRFDRQVTVDRPDVAGRVKILEVHSRGKALAKDVDFEKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIA 474          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH_TOBAC (Cell division protease ftsH homolog, chloroplastic OS=Nicotiana tabacum GN=FTSH PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 6.400e-25
Identity = 56/142 (39.44%), Postives = 93/142 (65.49%), Query Frame = -2
Query:  301 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 726
            IDA+G +R      G+ E ++T+ +LL ++DGFS +  + V+AATNR D+LD AL+R GR DR++ +  P    R +ILQ+HSR   +  DV+FE++AR T  + GA L+ +  EA +LA RR+  E++ ++ ++ + ++ A
Sbjct:  354 IDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRIKILQVHSRGKALTKDVDFEKIARRTPGYTGADLQNLMNEAAILAARRELKEISKDEISDALERIIA 495          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH1_ARATH (Cell division protease ftsH homolog 1, chloroplastic OS=Arabidopsis thaliana GN=FTSH1 PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 6.400e-25
Identity = 56/142 (39.44%), Postives = 93/142 (65.49%), Query Frame = -2
Query:  301 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 726
            IDA+G +R      G+ E ++T+ +LL ++DGFS +  + V+AATNR D+LD AL+R GR DR++ +  P    R +ILQ+HSR   +  DV+F+++AR T  F GA L+ +  EA +LA RR+  E++ ++ ++ + ++ A
Sbjct:  363 IDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALGKDVDFDKVARRTPGFTGADLQNLMNEAAILAARRELKEISKDEISDALERIIA 504          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH4_SYNY3 (Cell division protease ftsH homolog 4 OS=Synechocystis sp. (strain PCC 6803) GN=slr1604 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.358e-25
Identity = 58/142 (40.85%), Postives = 90/142 (63.38%), Query Frame = -2
Query:  301 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 726
            IDA+G +R      G+ E ++T+ +LL ++DGF  +  I ++AATNR D+LD ALMR GR DR++ +  P    R  IL +H+R  T+  DV+ +++AR T  F GA L  +  EA +LA RR+ TE++ ++ N+ I +V A
Sbjct:  262 IDAVGRQRGAGLGGGNDEREQTLNQLLTEMDGFEGNTGIIIVAATNRPDVLDSALMRPGRFDRQVVVDRPDYAGRREILNVHARGKTLSQDVDLDKIARRTPGFTGADLSNLLNEAAILAARRNLTEISMDEVNDAIDRVLA 403          
The following BLAST results are available for this feature:
BLAST of CN189408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
PRS6B_ENCCU3.874e-3043.7126S protease regulatory subunit 6B homolog OS=Ence... [more]
PRS6B_CAEEL5.059e-3044.37Probable 26S protease regulatory subunit 6B OS=Cae... [more]
PRS6B_SCHPO6.184e-2843.7926S protease regulatory subunit 6B homolog OS=Schi... [more]
PRS6B_ASPNG2.350e-2750.4026S protease regulatory subunit 6B homolog OS=Aspe... [more]
PRS6B_YEAST1.166e-2644.8526S protease regulatory subunit 6B homolog OS=Sacc... [more]
FTSH_CAPAN2.200e-2540.14Cell division protease ftsH homolog, chloroplastic... [more]
FTSH1_ORYSJ4.900e-2539.44Cell division protease ftsH homolog 1, chloroplast... [more]
FTSH_TOBAC6.400e-2539.44Cell division protease ftsH homolog, chloroplastic... [more]
FTSH1_ARATH6.400e-2539.44Cell division protease ftsH homolog 1, chloroplast... [more]
FTSH4_SYNY38.358e-2540.85Cell division protease ftsH homolog 4 OS=Synechocy... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001M24_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189408 ID=CN189408; Name=CN189408; organism=Citrus sinensis; type=EST; length=727bp
TTTTTTTTTTTTTTTTTATGGTACCGTCGCATTTCCTTTCCATCAACATA
CATCCTCTAACACGAGTAAAAATATCTCAAGAGTAACAGTTTGACTTTCA
TCACATTAAAAAAAATTATCACGCGGCTGACTTGGGAGTTTCACTTCTTA
TTATAACATATTATGTACAGTACAAAGACAATGTTTAATACCCATTTTTT
AATATTCAACCCAAAATATATTAATTACCAATTGAAGTAGAGGCTAAAAC
TTCGCCTTTGGATGTGTCTATGCATAGTAGTTTAAGCTAGCCTTTTTCTT
AGCCTGCACCTGAATGATACCTTCATTGAAATCCTCATGGTTGACCTCAG
TCGCATCACGGCGAAGAGCAAGCATCCCTGCTTCAACACAAACAGCTTTT
AGTTGTGCCCCATTGAAATCGTCAGTGGATCGAGCAAGTTCTTCGAAGTT
GACATCCGGGTGAACAGTCATCTTCCTCGAATGGATTTGCAAAATGCGAG
CTCTAGCTTCCTCACTCGGATGTGGTAACTCGATCTTGCGATCCAAACGG
CCAGATCGCATAAGAGCAGGGTCCAGGATATCAGCACGATTTGTTGCTGC
TATGACCTTAATCCGATCATCGCTGCTAAATCCATCGAGCTGATTGAGCA
ACTCTAACATAGTTCGCTGCACCTCCCTGTCTCCACTCACTTCACTGTCA
AACCGCTTTGTACCAATTGCGTCAATT
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