CN189408

Overview
NameCN189408
Unique NameCN189408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH_MEDSA (Cell division protease ftsH homolog, chloroplastic OS=Medicago sativa GN=FTSH PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.426e-24
Identity = 56/142 (39.44%), Postives = 91/142 (64.08%), Query Frame = -2
Query:  301 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 726
            IDA+G +R      G+ E ++T+ +LL ++DGFS +  + V+AATNR D+LD AL+R GR DR++ +  P    R +ILQ+HSR   +  DV+F+++AR T  F G  L+ +  EA +LA RRD  E++ ++  + + ++ A
Sbjct:  354 IDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFDKIARRTPGFTGVDLQNLMNEAAILAARRDLKEISKDEIADALERIIA 495          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH_BACPF (Cell division protease ftsH homolog OS=Bacillus pseudofirmus GN=ftsH PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.426e-24
Identity = 59/142 (41.55%), Postives = 92/142 (64.79%), Query Frame = -2
Query:  301 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 726
            IDA+G +R      G  E ++T+ +LL ++DGFS+++ I +IAATNRADILDPAL+R GR DR+I++  P    R  +L++H+R   ++ DVN + +A  T  F+GA L+ +  EA ++A R D T+++     E I +V A
Sbjct:  267 IDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFSANEGIIIIAATNRADILDPALLRPGRFDRQIQVNRPDVNGREEVLKVHARNKPLNDDVNLKTIATRTPGFSGADLENLLNEAALVAARHDHTKISMIHIEEAIDRVIA 408          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH5_ARATH (Cell division protease ftsH homolog 5, chloroplastic OS=Arabidopsis thaliana GN=FTSH5 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.426e-24
Identity = 55/142 (38.73%), Postives = 93/142 (65.49%), Query Frame = -2
Query:  301 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 726
            IDA+G +R      G+ E ++T+ +LL ++DGFS +  + V+AATNR D+LD AL+R GR DR++ +  P    R +IL++HSR   +  DV++E++AR T  F GA L+ +  EA +LA RR+  E++ ++ ++ + ++ A
Sbjct:  351 IDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVQILKVHSRGKAIGKDVDYEKVARRTPGFTGADLQNLMNEAAILAARRELKEISKDEISDALERIIA 492          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: Y1297_ARCFU (Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus GN=AF_1297 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.862e-24
Identity = 65/131 (49.62%), Postives = 87/131 (66.41%), Query Frame = -2
Query:  334 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHE 726
            ID+I  KR   EV+G+ E +R + +LL  +DG  +   + VIAATNR D +DPAL R GR DR+IE+  P +E R  IL+IH+RKM +  DV+ EELA  T+ F GA L+A+C EA M ALRR   E++ E
Sbjct:  284 IDSIAPKR--EEVTGEVE-RRVVAQLLALMDGLEARGDVIVIAATNRPDAIDPALRRPGRFDREIEIGVPDKEGRKEILEIHTRKMPLAEDVDLEELAELTNGFVGADLEALCKEAAMHALRRVLPEIDIE 411          

HSP 2 Score: 107.842 bits (268), Expect = 5.990e-23
Identity = 60/146 (41.10%), Postives = 88/146 (60.27%), Query Frame = -2
Query:  289 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKA 726
            ID++  +R    +      +R + +LL +LDG      + VIAATNR D++DPAL+R GRL+R I +P P ++AR  I +IH R   +  DVN EELA  T+ ++GA ++AVC EAGMLA+R        E    G+ + +AK+ A
Sbjct:  557 IDSLAPRR--GGIGDSHVTERVVSQLLTELDGLEELKDVVVIAATNRPDMIDPALLRPGRLERHIYIPPPDKKARVEIFKIHLRGKPLADDVNIEELAEKTEGYSGADIEAVCREAGMLAIR--------ELIKPGMTREEAKEAA 692          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH_CYACA (Cell division protease ftsH homolog OS=Cyanidium caldarium GN=ftsH PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.176e-24
Identity = 59/147 (40.14%), Postives = 91/147 (61.90%), Query Frame = -2
Query:  286 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKAS 726
            IDA+G +R      G+ E ++T+ +LL ++DGFS D  + V+AATNR D+LD AL+R GR DR+I +  P+   R  IL++HS+K  +H DV  E +AR T  F+GA L  +  EA +L +RR   E+  ++  + I ++ A  + S
Sbjct:  272 IDAVGRQRGVGIGGGNDEREQTLNQLLTEMDGFSGDTGVIVVAATNRIDVLDSALLRPGRFDRQIMVSLPNINGRLAILKVHSKKKKIHKDVLLEVIARRTPGFSGADLANLLNEAAILTVRRGKVEITMKEIEDSIDKIIAGLEGS 418          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH_AQUAE (Cell division protease ftsH homolog OS=Aquifex aeolicus GN=ftsH PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.176e-24
Identity = 61/141 (43.26%), Postives = 88/141 (62.41%), Query Frame = -2
Query:  307 IDAIGTKRFDSEVSGDR-EVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 726
            IDA+G  R    V G   E ++T+ +LL ++DGF + D I VIAATNR DILDPAL+R GR DR+I +P P    R  IL++H+R   +  DV+ E +AR+T  F GA L+ +  EA +LA R+   E+  E+  E + ++
Sbjct:  256 IDAVGRARGAIPVGGGHDEREQTLNQLLVEMDGFDTSDGIIVIAATNRPDILDPALLRPGRFDRQIFIPKPDVRGRYEILKVHARNKKLAKDVDLEFVARATPGFTGADLENLLNEAALLAARKGKEEITMEEIEEALDRI 396          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: Y1156_METJA (Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus jannaschii GN=MJ1156 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.576e-23
Identity = 60/122 (49.18%), Postives = 80/122 (65.57%), Query Frame = -2
Query:  361 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 726
            IDAI  KR     S   +  + + +LL +LDG      + VIAATNR DI+DPAL+R GRLDR I +P P E+AR  I +IH+R M +  DVN EELA+ T+ + GA ++A+C EA MLA+R
Sbjct:  554 IDAIAPKRGRDLSSAVTD--KVVNQLLTELDGMEEPKDVVVIAATNRPDIIDPALLRPGRLDRVILVPVPDEKARLDIFKIHTRSMNLAEDVNLEELAKKTEGYTGADIEALCREAAMLAVR 673          

HSP 2 Score: 100.138 bits (248), Expect = 1.249e-20
Identity = 65/158 (41.14%), Postives = 85/158 (53.80%), Query Frame = -2
Query:  304 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR-----------------DATEVNHEDFNEGIIQVQ 726
            IDAI  KR   E +G+ E +R + +LL  +DG     ++ VI ATNR + LDPAL R GR DR+I +  P  E R  ILQIH+R M +  DV+ + LA  T  F GA L A+C EA M ALRR                 D  +V  +DF E +  V+
Sbjct:  281 IDAIAPKR--DEATGEVE-RRLVAQLLTLMDGLKGRGQVVVIGATNRPNALDPALRRPGRFDREIVIGVPDREGRKEILQIHTRNMPLAEDVDLDYLADVTHGFVGADLAALCKEAAMRALRRVLPSIDLEAEEIPKEVLDNLKVTMDDFKEALKDVE 435          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH_MYCPN (Cell division protease ftsH homolog OS=Mycoplasma pneumoniae GN=ftsH PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.059e-23
Identity = 58/142 (40.85%), Postives = 93/142 (65.49%), Query Frame = -2
Query:  301 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 726
            ID++G+KR   E+S    V++T+ +LL ++DGF+S   + V+AATNR D+LD AL+R GR DR I++  P  + R  ILQ+H++   +   ++  ++A+ T  F+GAQL+ V  EA +LA+R + T +N  D +E I +V A
Sbjct:  329 IDSVGSKRGRVELSSYSVVEQTLNQLLAEMDGFTSRTGVVVMAATNRLDVLDDALLRPGRFDRHIQINLPDIKEREGILQVHAKNKNLSSKISLLDVAKRTPGFSGAQLENVINEATLLAVRDNRTTINMNDIDEAIDRVIA 470          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: VAT_THEAC (VCP-like ATPase OS=Thermoplasma acidophilum GN=vat PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.586e-23
Identity = 59/139 (42.45%), Postives = 90/139 (64.75%), Query Frame = -2
Query:  316 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR--DATEVNHEDFNEGI 726
            ID+I  +R  +  SG  E  R + +LL  LDG    + + VI ATNR DI+DPAL+R+GR D+ I +P P +EAR  IL++H++ M + PDV+  ++A+ T+ + GA L+ +C EAGM A R   DAT V+ ++F + +
Sbjct:  569 IDSIAPRRGTTSDSGVTE--RIVNQLLTSLDGIEVMNGVVVIGATNRPDIMDPALLRAGRFDKLIYIPPPDKEARLSILKVHTKNMPLAPDVDLNDIAQRTEGYVGADLENLCREAGMNAYRENPDATSVSQKNFLDAL 705          

HSP 2 Score: 85.8853 bits (211), Expect = 2.438e-16
Identity = 56/134 (41.79%), Postives = 74/134 (55.22%), Query Frame = -2
Query:  340 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTV-----HPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVN 726
            ID+I  KR   EV G+ E +R + +LL  +DG      + VI ATNR D +DPAL R GR DR+IE+  P    R  IL IH+R M +       +   EE+A  T  F GA L A+  E+ M ALRR   E++
Sbjct:  292 IDSIAPKR--EEVQGEVE-RRVVAQLLTLMDGMKERGHVIVIGATNRIDAIDPALRRPGRFDREIEIGVPDRNGRKEILMIHTRNMPLGMSEEEKNKFLEEMADYTYGFVGADLAALVRESAMNALRRYLPEID 422          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH_CYAME (Cell division protease ftsH homolog OS=Cyanidioschyzon merolae GN=ftsH PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.990e-23
Identity = 56/142 (39.44%), Postives = 90/142 (63.38%), Query Frame = -2
Query:  301 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 726
            IDA+G +R      G+ E ++T+ +LL ++DGF  +  + VIAATNR D+LD AL+R GR DR+I +  P  ++R  IL++H+ +  +HP V+ E +AR T  F GA L  +  EA +LA+RR   ++  ++ ++ I +V A
Sbjct:  255 IDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVIAATNRVDVLDAALLRPGRFDRQIMVSMPDVKSRIAILKVHANQKKLHPQVSLEAVARRTAGFAGADLANLLNEAAILAVRRGLKQITWKEIDDAIDRVIA 396          
The following BLAST results are available for this feature:
BLAST of CN189408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
FTSH_MEDSA1.426e-2439.44Cell division protease ftsH homolog, chloroplastic... [more]
FTSH_BACPF1.426e-2441.55Cell division protease ftsH homolog OS=Bacillus ps... [more]
FTSH5_ARATH1.426e-2438.73Cell division protease ftsH homolog 5, chloroplast... [more]
Y1297_ARCFU1.862e-2449.62Cell division cycle protein 48 homolog AF_1297 OS=... [more]
FTSH_CYACA3.176e-2440.14Cell division protease ftsH homolog OS=Cyanidium c... [more]
FTSH_AQUAE3.176e-2443.26Cell division protease ftsH homolog OS=Aquifex aeo... [more]
Y1156_METJA1.576e-2349.18Cell division cycle protein 48 homolog MJ1156 OS=M... [more]
FTSH_MYCPN2.059e-2340.85Cell division protease ftsH homolog OS=Mycoplasma ... [more]
VAT_THEAC4.586e-2342.45VCP-like ATPase OS=Thermoplasma acidophilum GN=vat... [more]
FTSH_CYAME5.990e-2339.44Cell division protease ftsH homolog OS=Cyanidiosch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001M24_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189408 ID=CN189408; Name=CN189408; organism=Citrus sinensis; type=EST; length=727bp
TTTTTTTTTTTTTTTTTATGGTACCGTCGCATTTCCTTTCCATCAACATA
CATCCTCTAACACGAGTAAAAATATCTCAAGAGTAACAGTTTGACTTTCA
TCACATTAAAAAAAATTATCACGCGGCTGACTTGGGAGTTTCACTTCTTA
TTATAACATATTATGTACAGTACAAAGACAATGTTTAATACCCATTTTTT
AATATTCAACCCAAAATATATTAATTACCAATTGAAGTAGAGGCTAAAAC
TTCGCCTTTGGATGTGTCTATGCATAGTAGTTTAAGCTAGCCTTTTTCTT
AGCCTGCACCTGAATGATACCTTCATTGAAATCCTCATGGTTGACCTCAG
TCGCATCACGGCGAAGAGCAAGCATCCCTGCTTCAACACAAACAGCTTTT
AGTTGTGCCCCATTGAAATCGTCAGTGGATCGAGCAAGTTCTTCGAAGTT
GACATCCGGGTGAACAGTCATCTTCCTCGAATGGATTTGCAAAATGCGAG
CTCTAGCTTCCTCACTCGGATGTGGTAACTCGATCTTGCGATCCAAACGG
CCAGATCGCATAAGAGCAGGGTCCAGGATATCAGCACGATTTGTTGCTGC
TATGACCTTAATCCGATCATCGCTGCTAAATCCATCGAGCTGATTGAGCA
ACTCTAACATAGTTCGCTGCACCTCCCTGTCTCCACTCACTTCACTGTCA
AACCGCTTTGTACCAATTGCGTCAATT
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