CN189408

Overview
NameCN189408
Unique NameCN189408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH_MYCGE (Cell division protease ftsH homolog OS=Mycoplasma genitalium GN=ftsH PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.334e-22
Identity = 57/142 (40.14%), Postives = 92/142 (64.79%), Query Frame = -2
Query:  301 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 726
            ID++G+KR   E+S    V++T+ +LL ++DGF+S   + V+AATNR D+LD AL+R GR DR I++  P  + R  IL++H+    +   ++  ++A+ T  F+GAQL+ V  EA +LA+R + T +N  D +E I +V A
Sbjct:  332 IDSVGSKRGRVELSSYSVVEQTLNQLLAEMDGFTSRTGVVVMAATNRLDVLDDALLRPGRFDRHIQINLPDIKEREGILKVHAENKNLSSKISLLDVAKRTPGFSGAQLENVINEATLLAVRDNRTTININDIDEAIDRVIA 473          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH_BACSU (Cell division protease ftsH homolog OS=Bacillus subtilis GN=ftsH PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.334e-22
Identity = 56/142 (39.44%), Postives = 90/142 (63.38%), Query Frame = -2
Query:  301 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 726
            IDA+G +R      G  E ++T+ +LL ++DGFS+++ I +IAATNRADILDPAL+R GR DR+I +  P    R  +L++H+R   +   VN + +A  T  F+GA L+ +  EA ++A R++  +++  D +E   +V A
Sbjct:  262 IDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFSANEGIIIIAATNRADILDPALLRPGRFDRQITVDRPDVIGREAVLKVHARNKPLDETVNLKSIAMRTPGFSGADLENLLNEAALVAARQNKKKIDARDIDEATDRVIA 403          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH_LACLA (Cell division protease ftsH homolog OS=Lactococcus lactis subsp. lactis GN=ftsH PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.883e-22
Identity = 55/143 (38.46%), Postives = 90/143 (62.94%), Query Frame = -2
Query:  301 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD-DRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 726
            IDA+G +R      G+ E ++T+ +LL ++DGF  D + + VIAATNR+D+LDPAL+R GR DRK+ +  P  + R  +L++H++   +  DV+   +A  T  + GA L+ V  EA ++A R++  E+N  D +EG+ +  A
Sbjct:  294 IDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFQDDGNSVIVIAATNRSDVLDPALLRPGRFDRKVLVGAPDVKGREAVLKVHAKNKPLASDVDLHNVATQTPGYVGADLENVLNEAALVAARQNKKEINAADIDEGMDRAMA 436          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: AFG32_BOVIN (AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.071e-22
Identity = 56/144 (38.89%), Postives = 85/144 (59.03%), Query Frame = -2
Query:  307 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARS----TDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 726
            IDA+G KR      G  E + T+ +LL ++DGF++   + ++A TNR DILDPALMR GR DR+I +  P  + RA I ++H R + +   +  E+LAR     T  F+GA +  VC EA ++A R  +  +N + F + I +V
Sbjct:  410 IDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALMRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKEKLARKLASLTPGFSGADVANVCNEAALIAARHLSDSINQKHFEQAIERV 553          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH_STRR6 (Cell division protease ftsH homolog OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=ftsH PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.623e-22
Identity = 54/135 (40.00%), Postives = 88/135 (65.19%), Query Frame = -2
Query:  322 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNE 726
            IDA+G +R      G+ E ++T+ +LL ++DGF  ++ I VIAATNR+D+LDPAL+R GR DRK+ +  P  + R  IL++H++   +  DV+ + +A+ T  F GA L+ V  EA ++A RR+ + ++  D +E
Sbjct:  288 IDAVGRQRGVGLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVLVGRPDVKGREAILKVHAKNKPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRNKSIIDASDIDE 422          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH_STRPN (Cell division protease ftsH homolog OS=Streptococcus pneumoniae GN=ftsH PE=3 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 6.623e-22
Identity = 54/135 (40.00%), Postives = 88/135 (65.19%), Query Frame = -2
Query:  322 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNE 726
            IDA+G +R      G+ E ++T+ +LL ++DGF  ++ I VIAATNR+D+LDPAL+R GR DRK+ +  P  + R  IL++H++   +  DV+ + +A+ T  F GA L+ V  EA ++A RR+ + ++  D +E
Sbjct:  288 IDAVGRQRGVGLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVLVGRPDVKGREAILKVHAKNKPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRNKSIIDASDIDE 422          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH2_ORYSJ (Cell division protease ftsH homolog 2, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH2 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.650e-22
Identity = 60/165 (36.36%), Postives = 90/165 (54.55%), Query Frame = -2
Query:  262 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFN----------EGIIQVQAKKKASLNYYA*TH 726
            IDA+G +R      G+ E ++T+ +LL ++DGF  +  I VIAATNRADILD AL+R GR DR++ +  P    R  IL++H        DV+ E +A  T  F+GA L  +  EA +LA RR  T ++ ++ +          EG +    K K+ + Y+   H
Sbjct:  315 IDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVSVDVPDVRGRTEILKVHGSNKKFDTDVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGRTAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGH 479          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FSTH_PORYE (Cell division protease ftsH homolog OS=Porphyra yezoensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.130e-21
Identity = 55/142 (38.73%), Postives = 85/142 (59.86%), Query Frame = -2
Query:  301 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 726
            IDA+G +R      G+ E ++T+ +LL ++DGF  +  + VIAATNRADILD AL+R GR DR++ +  P  + R  IL++H++   + P V+ E +AR T  F+GA L  +  EA +L  RR    +   + +  I +V A
Sbjct:  274 IDAVGRQRGTGVGGGNDEREQTLNQLLTEMDGFEGNTGVIVIAATNRADILDSALLRPGRFDRQVSVDVPDFKGRLAILEVHAKNKKMEPKVSLETIARRTPGFSGADLANLLNEAAILTARRRKNAMTMSEIDTSIDRVVA 415          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH1_SYNY3 (Cell division protease ftsH homolog 1 OS=Synechocystis sp. (strain PCC 6803) GN=slr0228 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.927e-21
Identity = 53/142 (37.32%), Postives = 86/142 (60.56%), Query Frame = -2
Query:  301 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 726
            IDA+G +R      G+ E ++T+ +LL ++DGF  +  I +IAATNR D+LD ALMR GR DR++ +  P    R  IL++H+R   + P+V+ + +AR T  F+GA L  +  EA +L  RR  + +   + ++ + +V A
Sbjct:  273 IDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDSALMRPGRFDRQVMVDAPDYSGRKEILEVHARNKKLAPEVSIDSIARRTPGFSGADLANLLNEAAILTARRRKSAITLLEIDDAVDRVVA 414          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: AFG32_HUMAN (AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.517e-21
Identity = 54/144 (37.50%), Postives = 85/144 (59.03%), Query Frame = -2
Query:  307 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARS----TDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 726
            IDA+G KR      G  E + T+ +LL ++DGF++   + ++A TNR DILDPAL+R GR DR+I +  P  + RA I ++H R + +   +  ++LAR     T  F+GA +  VC EA ++A R  +  +N + F + I +V
Sbjct:  409 IDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKDKLARKLASLTPGFSGADVANVCNEAALIAARHLSDSINQKHFEQAIERV 552          
The following BLAST results are available for this feature:
BLAST of CN189408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
FTSH_MYCGE1.334e-2240.14Cell division protease ftsH homolog OS=Mycoplasma ... [more]
FTSH_BACSU1.334e-2239.44Cell division protease ftsH homolog OS=Bacillus su... [more]
FTSH_LACLA3.883e-2238.46Cell division protease ftsH homolog OS=Lactococcus... [more]
AFG32_BOVIN5.071e-2238.89AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 S... [more]
FTSH_STRR66.623e-2240.00Cell division protease ftsH homolog OS=Streptococc... [more]
FTSH_STRPN6.623e-2240.00Cell division protease ftsH homolog OS=Streptococc... [more]
FTSH2_ORYSJ8.650e-2236.36Cell division protease ftsH homolog 2, chloroplast... [more]
FSTH_PORYE1.130e-2138.73Cell division protease ftsH homolog OS=Porphyra ye... [more]
FTSH1_SYNY31.927e-2137.32Cell division protease ftsH homolog 1 OS=Synechocy... [more]
AFG32_HUMAN2.517e-2137.50AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001M24_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189408 ID=CN189408; Name=CN189408; organism=Citrus sinensis; type=EST; length=727bp
TTTTTTTTTTTTTTTTTATGGTACCGTCGCATTTCCTTTCCATCAACATA
CATCCTCTAACACGAGTAAAAATATCTCAAGAGTAACAGTTTGACTTTCA
TCACATTAAAAAAAATTATCACGCGGCTGACTTGGGAGTTTCACTTCTTA
TTATAACATATTATGTACAGTACAAAGACAATGTTTAATACCCATTTTTT
AATATTCAACCCAAAATATATTAATTACCAATTGAAGTAGAGGCTAAAAC
TTCGCCTTTGGATGTGTCTATGCATAGTAGTTTAAGCTAGCCTTTTTCTT
AGCCTGCACCTGAATGATACCTTCATTGAAATCCTCATGGTTGACCTCAG
TCGCATCACGGCGAAGAGCAAGCATCCCTGCTTCAACACAAACAGCTTTT
AGTTGTGCCCCATTGAAATCGTCAGTGGATCGAGCAAGTTCTTCGAAGTT
GACATCCGGGTGAACAGTCATCTTCCTCGAATGGATTTGCAAAATGCGAG
CTCTAGCTTCCTCACTCGGATGTGGTAACTCGATCTTGCGATCCAAACGG
CCAGATCGCATAAGAGCAGGGTCCAGGATATCAGCACGATTTGTTGCTGC
TATGACCTTAATCCGATCATCGCTGCTAAATCCATCGAGCTGATTGAGCA
ACTCTAACATAGTTCGCTGCACCTCCCTGTCTCCACTCACTTCACTGTCA
AACCGCTTTGTACCAATTGCGTCAATT
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