CN189408

Overview
NameCN189408
Unique NameCN189408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH2_ARATH (Cell division protease ftsH homolog 2, chloroplastic OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.287e-21
Identity = 58/165 (35.15%), Postives = 92/165 (55.76%), Query Frame = -2
Query:  262 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFN----------EGIIQVQAKKKASLNYYA*TH 726
            IDA+G +R      G+ E ++T+ +LL ++DGF  +  + V+AATNRADILD AL+R GR DR++ +  P  + R  IL++H+       DV+ E +A  T  F+GA L  +  EA +LA RR  T ++ ++ +          EG +    K K+ + Y+   H
Sbjct:  328 IDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHAGNKKFDNDVSLEIIAMRTPGFSGADLANLLNEAAILAGRRARTSISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGH 492          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH8_ARATH (Cell division protease ftsH homolog 8, chloroplastic OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.293e-21
Identity = 58/165 (35.15%), Postives = 91/165 (55.15%), Query Frame = -2
Query:  262 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFN----------EGIIQVQAKKKASLNYYA*TH 726
            IDA+G +R      G+ E ++T+ +LL ++DGF  +  + V+AATNRADILD AL+R GR DR++ +  P  + R  IL++HS        V+ E +A  T  F+GA L  +  EA +LA RR  T ++ ++ +          EG +    K K+ + Y+   H
Sbjct:  321 IDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHSGNKKFESGVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGKTAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGH 485          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH2_SYNY3 (Cell division protease ftsH homolog 2 OS=Synechocystis sp. (strain PCC 6803) GN=slr1390 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.293e-21
Identity = 55/142 (38.73%), Postives = 82/142 (57.75%), Query Frame = -2
Query:  301 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 726
            IDA+G +R      G+ E ++T+ +LL ++DGF  +  I VIAATNR D+LD AL+R GR DR++ + +P  + R  IL IH++   +H +V    +AR T  F GA L  V  EA +   RR    +   + N+ I +V A
Sbjct:  312 IDAVGRQRGVGYGGGNDEREQTLNQLLTEMDGFEGNSGIIVIAATNRPDVLDLALLRPGRFDRQVTVDYPDVQGRELILAIHAQNKKLHEEVQLAAIARRTPGFTGADLANVLNEAAIFTARRRKEAITMAEVNDAIDRVVA 453          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH1_HAEIN (Cell division protease ftsH homolog 1 OS=Haemophilus influenzae GN=ftsH-A PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.293e-21
Identity = 55/135 (40.74%), Postives = 84/135 (62.22%), Query Frame = -2
Query:  322 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNE 726
            IDA+G +R      G  E ++T+ ++L ++DGFS +D + VIAATNR D+LDPAL R GR DR++ +  P  + R +IL++H RK++V  DV+   LAR T  ++GA L  +  EA + A R +   V   +F +
Sbjct:  252 IDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFSGNDGVIVIAATNRPDVLDPALTRPGRFDRQVVVGLPDVKGREQILKVHMRKVSVAQDVDAMTLARGTPGYSGADLANLVNEAALFAARVNKRTVTMLEFEK 386          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: AFG32_MOUSE (AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.293e-21
Identity = 54/144 (37.50%), Postives = 85/144 (59.03%), Query Frame = -2
Query:  307 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARS----TDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 726
            IDA+G KR      G  E + T+ +LL ++DGF++   + ++A TNR DILDPAL+R GR DR+I +  P  + RA I ++H R + +   +  ++LAR     T  F+GA +  VC EA ++A R  +  +N + F + I +V
Sbjct:  408 IDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSALEKDKLARKLASLTPGFSGADVANVCNEAALIAARHLSDAINEKHFEQAIERV 551          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH_TREPA (Cell division protease ftsH homolog OS=Treponema pallidum GN=ftsH PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.607e-21
Identity = 53/137 (38.69%), Postives = 88/137 (64.23%), Query Frame = -2
Query:  316 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 726
            +DAIG  R ++  S D E ++T+ +LL ++DGF +   + ++AATNR D+LDPAL+R GR DR++ +  P  + R  IL+IH++ + + P+V+ + +AR T  ++GA L  V  EA +LA+R    +V   D +E +
Sbjct:  242 LDAIGKSRLNAIHSND-EREQTLNQLLVEMDGFDNTTGLILLAATNRPDVLDPALLRPGRFDRQVCVDRPDLKGREAILRIHAQNVKLAPEVDLKAVARITGGYSGADLANVVNEAALLAVRSGRAQVIETDLDEAV 377          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: SAV_SULAC (Protein SAV OS=Sulfolobus acidocaldarius GN=sav PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.322e-21
Identity = 58/127 (45.67%), Postives = 78/127 (61.42%), Query Frame = -2
Query:  346 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATE 726
            IDAI  KR D  V+G+ E +R + +LL  +DG     R+ VI ATNR D +DPAL R GR DR+IE+  P  + R  ILQ+H+R M +  DV+ ++LA  T  + GA L A+  EA + ALRR   E
Sbjct:  314 IDAIAPKRED--VTGEVE-KRVVAQLLTLMDGIKGRGRVIVIGATNRPDAIDPALRRPGRFDREIEIRPPDTKGRKDILQVHTRNMPITDDVDLDKLAEMTYGYTGADLAALAKEAAIYALRRFVDE 437          

HSP 2 Score: 90.8929 bits (224), Expect = 7.577e-18
Identity = 51/122 (41.80%), Postives = 78/122 (63.93%), Query Frame = -2
Query:  361 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 726
            ID+I   R  S  SG  E  R + +LL ++DG    +++ +IAATNR DILDPAL+R GR DR I +P P + AR  IL++H++ + +  DV+ E++A   + + GA L+A+  EA + A+R
Sbjct:  589 IDSIAPIRGLSTDSGVTE--RIVNQLLAEMDGIVPLNKVVIIAATNRPDILDPALLRPGRFDRLIYVPPPDKTARFEILKVHTKNVPLAEDVSLEDIAEKAEGYTGADLEALVREATINAMR 708          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: CDCH_HALSA (Protein cdcH OS=Halobacterium salinarium GN=cdcH PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.322e-21
Identity = 62/147 (42.18%), Postives = 86/147 (58.50%), Query Frame = -2
Query:  292 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEV--NHEDFNEGIIQVQAKKK 726
            +D+I  KR D  V+G+ E +R + +LL  +DG     ++ VIAATNR D +DPAL R GR DR+IE+  P E  R  IL+IH+R M +  DVN   LA  T  F GA ++++  EA M ALRR   E+  + ED    +I     K+
Sbjct:  291 LDSIAPKRED--VTGEVE-RRVVAQLLTMMDGLEGRGQVIVIAATNRVDAVDPALRRPGRFDREIEIGVPDEIGREEILKIHTRGMPLSDDVNLSTLADDTHGFVGADIESLSKEAAMRALRRYLPEIDLDEEDIPPSLIDRMIVKR 434          

HSP 2 Score: 93.5893 bits (231), Expect = 1.169e-18
Identity = 51/132 (38.64%), Postives = 77/132 (58.33%), Query Frame = -2
Query:  304 EVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR--RDATEVNHEDFNEGIIQVQ 693
            +  G+   +R + +LL +LDG    + + VIAATNR DI+DPAL+RSGR DR +++  P  E R +IL+IH++   +  DV+  ELA   D + G+ L  +  EA + ALR   DA +V    F   +  V+
Sbjct:  573 QTGGNNVSERVVNQLLTELDGLEEMEEVMVIAATNRPDIIDPALIRSGRFDRLVQVGQPGIEGREQILKIHTQDTPLAADVSLRELAERADGYVGSDLANIAREAAIEALRDDEDADDVGMAHFRAAMENVR 704          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH_RICBR (Cell division protease ftsH homolog OS=Rickettsia bellii (strain RML369-C) GN=ftsH PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.563e-21
Identity = 52/135 (38.52%), Postives = 84/135 (62.22%), Query Frame = -2
Query:  322 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNE 726
            IDA+G  R      G+ E ++T+ ++L ++DGF +++ + +IAATNR D+LD AL+R GR DR+I + +P  + R +ILQ+H +K+     +    +AR T  F+GA+L  +  EA ++A RR+  EV   D  E
Sbjct:  256 IDAVGRHRGIGMGGGNDEREQTLNQMLVEMDGFEANEGVVIIAATNRPDVLDNALLRPGRFDRQITVSNPDIDGREKILQVHLKKVKYSTKIVPRIIARGTPGFSGAELANLVNEATLIAARRNKKEVEMHDLEE 390          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH_PORPU (Cell division protease ftsH homolog OS=Porphyra purpurea GN=ftsH PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.563e-21
Identity = 54/142 (38.03%), Postives = 84/142 (59.15%), Query Frame = -2
Query:  301 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 726
            IDA+G +R      G+ E ++T+ +LL ++DGF  +  + VIAATNRADILD AL+R GR DR++ +  P    R  IL++H++   +   V+ E +AR T  F+GA L  +  EA +L  RR  + +   + +  I +V A
Sbjct:  274 IDAVGRQRGTGVGGGNDEREQTLNQLLTEMDGFEGNTGVIVIAATNRADILDSALLRPGRFDRQVSVDVPDFRGRLAILEVHAKNKKMESKVSLETIARRTPGFSGADLANLLNEAAILTARRRKSAMTMSEIDTSIDRVVA 415          
The following BLAST results are available for this feature:
BLAST of CN189408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
FTSH2_ARATH3.287e-2135.15Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH8_ARATH4.293e-2135.15Cell division protease ftsH homolog 8, chloroplast... [more]
FTSH2_SYNY34.293e-2138.73Cell division protease ftsH homolog 2 OS=Synechocy... [more]
FTSH1_HAEIN4.293e-2140.74Cell division protease ftsH homolog 1 OS=Haemophil... [more]
AFG32_MOUSE4.293e-2137.50AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1... [more]
FTSH_TREPA5.607e-2138.69Cell division protease ftsH homolog OS=Treponema p... [more]
SAV_SULAC7.322e-2145.67Protein SAV OS=Sulfolobus acidocaldarius GN=sav PE... [more]
CDCH_HALSA7.322e-2142.18Protein cdcH OS=Halobacterium salinarium GN=cdcH P... [more]
FTSH_RICBR9.563e-2138.52Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_PORPU9.563e-2138.03Cell division protease ftsH homolog OS=Porphyra pu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001M24_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189408 ID=CN189408; Name=CN189408; organism=Citrus sinensis; type=EST; length=727bp
TTTTTTTTTTTTTTTTTATGGTACCGTCGCATTTCCTTTCCATCAACATA
CATCCTCTAACACGAGTAAAAATATCTCAAGAGTAACAGTTTGACTTTCA
TCACATTAAAAAAAATTATCACGCGGCTGACTTGGGAGTTTCACTTCTTA
TTATAACATATTATGTACAGTACAAAGACAATGTTTAATACCCATTTTTT
AATATTCAACCCAAAATATATTAATTACCAATTGAAGTAGAGGCTAAAAC
TTCGCCTTTGGATGTGTCTATGCATAGTAGTTTAAGCTAGCCTTTTTCTT
AGCCTGCACCTGAATGATACCTTCATTGAAATCCTCATGGTTGACCTCAG
TCGCATCACGGCGAAGAGCAAGCATCCCTGCTTCAACACAAACAGCTTTT
AGTTGTGCCCCATTGAAATCGTCAGTGGATCGAGCAAGTTCTTCGAAGTT
GACATCCGGGTGAACAGTCATCTTCCTCGAATGGATTTGCAAAATGCGAG
CTCTAGCTTCCTCACTCGGATGTGGTAACTCGATCTTGCGATCCAAACGG
CCAGATCGCATAAGAGCAGGGTCCAGGATATCAGCACGATTTGTTGCTGC
TATGACCTTAATCCGATCATCGCTGCTAAATCCATCGAGCTGATTGAGCA
ACTCTAACATAGTTCGCTGCACCTCCCTGTCTCCACTCACTTCACTGTCA
AACCGCTTTGTACCAATTGCGTCAATT
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