CN189408

Overview
NameCN189408
Unique NameCN189408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: AFG2_SCHPO (ATPase family gene 2 protein OS=Schizosaccharomyces pombe GN=afg2 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.563e-21
Identity = 59/155 (38.06%), Postives = 92/155 (59.35%), Query Frame = -2
Query:  271 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD--ATEVNHEDFNEGIIQV-QAKKKASLNYYA 726
            IDA+   R +     D    R +  LLN+LDG  +   + V+AATNR D++DPALMR GRLDR + +  P+ EAR +I++I + KM    DV+ + +A  T+  +GA++ A+C EAG++A+  D  A E+    F   ++ + +A  +  L YYA
Sbjct:  650 IDALTANRGE-----DNSSDRVVAALLNELDGIEALRNVLVLAATNRPDMIDPALMRPGRLDRLLYVGPPNFEARKQIVKIQAEKMKFAEDVDLDLIAEKTEGCSGAEVVALCQEAGLIAMHEDLEAKEICQAHFKTALLALRKAITRDMLEYYA 799          

HSP 2 Score: 70.0922 bits (170), Expect = 1.384e-11
Identity = 46/124 (37.10%), Postives = 69/124 (55.65%), Query Frame = -2
Query:  358 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQ-IHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 726
            IDA+  KR +     +     T+L LL   DG ++  ++ VIAATNR + +D AL R GRL+++IE+  P + AR  I++ + S       D   E+LA  T  + GA L AV  EA + A++R
Sbjct:  381 IDALAPKRTEDVSEAESRAVATLLTLL---DGMANAGKVVVIAATNRPNSIDEALRRPGRLEKEIEIGIPDKSARLDIIKLLLSGVPNEINDAQLEDLASRTHAYVGADLAAVVREAALRAIKR 501          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH_SHIFL (Cell division protease ftsH OS=Shigella flexneri GN=ftsH PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.249e-20
Identity = 52/135 (38.52%), Postives = 84/135 (62.22%), Query Frame = -2
Query:  322 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNE 726
            IDA+G +R      G  E ++T+ ++L ++DGF  ++ I VIAATNR D+LDPAL+R GR DR++ +  P    R +IL++H R++ + PD++   +AR T  F+GA L  +  EA + A R +   V+  +F +
Sbjct:  253 IDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEK 387          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH_ECOLI (Cell division protease ftsH OS=Escherichia coli (strain K12) GN=ftsH PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.249e-20
Identity = 52/135 (38.52%), Postives = 84/135 (62.22%), Query Frame = -2
Query:  322 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNE 726
            IDA+G +R      G  E ++T+ ++L ++DGF  ++ I VIAATNR D+LDPAL+R GR DR++ +  P    R +IL++H R++ + PD++   +AR T  F+GA L  +  EA + A R +   V+  +F +
Sbjct:  253 IDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEK 387          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH_ECO57 (Cell division protease ftsH OS=Escherichia coli O157:H7 GN=ftsH PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.249e-20
Identity = 52/135 (38.52%), Postives = 84/135 (62.22%), Query Frame = -2
Query:  322 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNE 726
            IDA+G +R      G  E ++T+ ++L ++DGF  ++ I VIAATNR D+LDPAL+R GR DR++ +  P    R +IL++H R++ + PD++   +AR T  F+GA L  +  EA + A R +   V+  +F +
Sbjct:  253 IDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEK 387          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH_HELPY (Cell division protease ftsH homolog OS=Helicobacter pylori GN=ftsH PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.631e-20
Identity = 57/139 (41.01%), Postives = 85/139 (61.15%), Query Frame = -2
Query:  316 IDAIGTKRF-DSEVSGDREVQRTMLELLNQLDGFSSDDR-IKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 726
            IDAIG  R     VSG+ E ++T+ +LL ++DGF S++  + V+AATNR +ILDPALMR GR DR++ +  P    R  IL++H + + +  DVN +E+A+ T    GA L  +  EA +LA R +  EV  +   E +
Sbjct:  271 IDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAV 409          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH_HELPJ (Cell division protease ftsH homolog OS=Helicobacter pylori J99 GN=ftsH PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.130e-20
Identity = 56/139 (40.29%), Postives = 85/139 (61.15%), Query Frame = -2
Query:  316 IDAIGTKRF-DSEVSGDREVQRTMLELLNQLDGFSSDDR-IKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 726
            IDAIG  R     +SG+ E ++T+ +LL ++DGF S++  + V+AATNR +ILDPALMR GR DR++ +  P    R  IL++H + + +  DVN +E+A+ T    GA L  +  EA +LA R +  EV  +   E +
Sbjct:  271 IDAIGKSRAAGGMISGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVKQQHLKEAV 409          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: AFG31_MOUSE (AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.130e-20
Identity = 55/144 (38.19%), Postives = 81/144 (56.25%), Query Frame = -2
Query:  307 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKM----TVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 726
            IDAIG KR    + G  E + T+ ++L ++DGF+S   + V+A TNR DILDPAL R GR DR+I +  P  + R+ I ++H R +    ++  D    +LA  T  F GA +  VC EA ++A R  +  V    F + I +V
Sbjct:  401 IDAIGRKRGRGHLGGQSEQENTLNQMLVEMDGFNSSTNVVVLAGTNRPDILDPALTRPGRFDRQIYIGPPDIKGRSSIFKVHLRPLKLDGSLSKDALSRKLAALTPGFTGADISNVCNEAALIAARHLSPSVQERHFEQAIERV 544          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH_ODOSI (Cell division protease ftsH homolog OS=Odontella sinensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.783e-20
Identity = 52/135 (38.52%), Postives = 80/135 (59.26%), Query Frame = -2
Query:  322 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNE 726
            IDA+G +R      G+ E ++T+ +LL ++DGF  +  + V+ ATNRADILD AL+R GR DR++ +  P    R  IL++H+R   +  DV+  +LA  T  F+GA L  +  EA +LA R   + +   + NE
Sbjct:  287 IDAVGRERGAGVGGGNDEREQTLNQLLTEMDGFKENKGVIVVGATNRADILDAALLRPGRFDRQVTVNLPDRLGRVGILKVHARNKPLGEDVSLVQLANRTPGFSGADLANLLNEAAILATRYKKSSITKNEVNE 421          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH_RICTY (Cell division protease ftsH homolog OS=Rickettsia typhi GN=ftsH PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.096e-20
Identity = 51/135 (37.78%), Postives = 83/135 (61.48%), Query Frame = -2
Query:  322 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNE 726
            IDA+G  R      G+ E ++T+ ++L ++DGF +++ + +IAATNR D+LD AL+R GR DR+I + +P    R +IL++H +K+  +  V    +AR T  F+GA+L  +  EA ++A R    EV+  D  E
Sbjct:  256 IDAVGRHRGIGMGGGNDEREQTLNQMLVEMDGFEANEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANPDINGREQILKVHLKKIKYNSTVLARIIARGTPGFSGAELANLVNEAALIAARLGKKEVDMHDMEE 390          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH_RICPR (Cell division protease ftsH homolog OS=Rickettsia prowazekii GN=ftsH PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.096e-20
Identity = 51/135 (37.78%), Postives = 83/135 (61.48%), Query Frame = -2
Query:  322 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNE 726
            IDA+G  R      G+ E ++T+ ++L ++DGF +++ + +IAATNR D+LD AL+R GR DR+I + +P    R +IL++H +K+  +  V    +AR T  F+GA+L  +  EA ++A R    EV+  D  E
Sbjct:  256 IDAVGRHRGIGMGGGNDEREQTLNQMLVEMDGFEANEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANPDINGREQILKVHLKKIKYNSTVLARIIARGTPGFSGAELANLVNEAALIAARLGKKEVDMHDMEE 390          
The following BLAST results are available for this feature:
BLAST of CN189408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
AFG2_SCHPO9.563e-2138.06ATPase family gene 2 protein OS=Schizosaccharomyce... [more]
FTSH_SHIFL1.249e-2038.52Cell division protease ftsH OS=Shigella flexneri G... [more]
FTSH_ECOLI1.249e-2038.52Cell division protease ftsH OS=Escherichia coli (s... [more]
FTSH_ECO571.249e-2038.52Cell division protease ftsH OS=Escherichia coli O1... [more]
FTSH_HELPY1.631e-2041.01Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH_HELPJ2.130e-2040.29Cell division protease ftsH homolog OS=Helicobacte... [more]
AFG31_MOUSE2.130e-2038.19AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2... [more]
FTSH_ODOSI2.783e-2038.52Cell division protease ftsH homolog OS=Odontella s... [more]
FTSH_RICTY8.096e-2037.78Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_RICPR8.096e-2037.78Cell division protease ftsH homolog OS=Rickettsia ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001M24_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189408 ID=CN189408; Name=CN189408; organism=Citrus sinensis; type=EST; length=727bp
TTTTTTTTTTTTTTTTTATGGTACCGTCGCATTTCCTTTCCATCAACATA
CATCCTCTAACACGAGTAAAAATATCTCAAGAGTAACAGTTTGACTTTCA
TCACATTAAAAAAAATTATCACGCGGCTGACTTGGGAGTTTCACTTCTTA
TTATAACATATTATGTACAGTACAAAGACAATGTTTAATACCCATTTTTT
AATATTCAACCCAAAATATATTAATTACCAATTGAAGTAGAGGCTAAAAC
TTCGCCTTTGGATGTGTCTATGCATAGTAGTTTAAGCTAGCCTTTTTCTT
AGCCTGCACCTGAATGATACCTTCATTGAAATCCTCATGGTTGACCTCAG
TCGCATCACGGCGAAGAGCAAGCATCCCTGCTTCAACACAAACAGCTTTT
AGTTGTGCCCCATTGAAATCGTCAGTGGATCGAGCAAGTTCTTCGAAGTT
GACATCCGGGTGAACAGTCATCTTCCTCGAATGGATTTGCAAAATGCGAG
CTCTAGCTTCCTCACTCGGATGTGGTAACTCGATCTTGCGATCCAAACGG
CCAGATCGCATAAGAGCAGGGTCCAGGATATCAGCACGATTTGTTGCTGC
TATGACCTTAATCCGATCATCGCTGCTAAATCCATCGAGCTGATTGAGCA
ACTCTAACATAGTTCGCTGCACCTCCCTGTCTCCACTCACTTCACTGTCA
AACCGCTTTGTACCAATTGCGTCAATT
back to top