CN189408

Overview
NameCN189408
Unique NameCN189408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH3_SYNY3 (Cell division protease ftsH homolog 3 OS=Synechocystis sp. (strain PCC 6803) GN=sll1463 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.356e-19
Identity = 55/144 (38.19%), Postives = 85/144 (59.03%), Query Frame = -2
Query:  301 IDAIGTKRFDSE-VSGDREVQRTMLELLNQLDGFSSDDR-IKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 726
            +DAIG  R     + G+ E ++T+ +LL ++DGFS+    + V+AATNR + LDPAL+R GR DR++ +  P    R +IL+I+++K+ +  +V  + +A  T  F GA L  +  EA +LA R     V   DF E I +V A
Sbjct:  275 LDAIGKSRASGAFMGGNDEREQTLNQLLTEMDGFSAAGATVIVLAATNRPETLDPALLRPGRFDRQVLVDRPDLAGRLKILEIYAKKIKLDKEVELKNIATRTPGFAGADLANLVNEAALLAARNKQDSVTEADFREAIERVVA 418          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: TERA_RAT (Transitional endoplasmic reticulum ATPase OS=Rattus norvegicus GN=Vcp PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 3.076e-19
Identity = 51/132 (38.64%), Postives = 79/132 (59.85%), Query Frame = -2
Query:  334 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD-ATEVNHE 726
            +D+I   R  +   G     R + ++L ++DG S+   + +I ATNR DI+DPA++R GRLD+ I +P P E++R  IL+ + RK  V  DV+ E LA+ T+ F+GA L  +C  A  LA+R    +E+  E
Sbjct:  579 LDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRE 710          

HSP 2 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 51/132 (38.64%), Postives = 78/132 (59.09%), Query Frame = -2
Query:  331 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 726
            +DAI  KR   +  G+ E +R + +LL  +DG      + V+AATNR + +DPAL R GR DR++++  P    R  ILQIH++ M +  DV+ E++A  T    GA L A+C EA + A+R+    ++ ED
Sbjct:  306 LDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: TERA_PIG (Transitional endoplasmic reticulum ATPase OS=Sus scrofa GN=VCP PE=1 SV=5)

HSP 1 Score: 95.5153 bits (236), Expect = 3.076e-19
Identity = 51/132 (38.64%), Postives = 79/132 (59.85%), Query Frame = -2
Query:  334 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD-ATEVNHE 726
            +D+I   R  +   G     R + ++L ++DG S+   + +I ATNR DI+DPA++R GRLD+ I +P P E++R  IL+ + RK  V  DV+ E LA+ T+ F+GA L  +C  A  LA+R    +E+  E
Sbjct:  579 LDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRE 710          

HSP 2 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 51/132 (38.64%), Postives = 78/132 (59.09%), Query Frame = -2
Query:  331 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 726
            +DAI  KR   +  G+ E +R + +LL  +DG      + V+AATNR + +DPAL R GR DR++++  P    R  ILQIH++ M +  DV+ E++A  T    GA L A+C EA + A+R+    ++ ED
Sbjct:  306 LDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: TERA_MOUSE (Transitional endoplasmic reticulum ATPase OS=Mus musculus GN=Vcp PE=1 SV=4)

HSP 1 Score: 95.5153 bits (236), Expect = 3.076e-19
Identity = 51/132 (38.64%), Postives = 79/132 (59.85%), Query Frame = -2
Query:  334 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD-ATEVNHE 726
            +D+I   R  +   G     R + ++L ++DG S+   + +I ATNR DI+DPA++R GRLD+ I +P P E++R  IL+ + RK  V  DV+ E LA+ T+ F+GA L  +C  A  LA+R    +E+  E
Sbjct:  579 LDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRE 710          

HSP 2 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 51/132 (38.64%), Postives = 78/132 (59.09%), Query Frame = -2
Query:  331 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 726
            +DAI  KR   +  G+ E +R + +LL  +DG      + V+AATNR + +DPAL R GR DR++++  P    R  ILQIH++ M +  DV+ E++A  T    GA L A+C EA + A+R+    ++ ED
Sbjct:  306 LDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: TERA_HUMAN (Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4)

HSP 1 Score: 95.5153 bits (236), Expect = 3.076e-19
Identity = 51/132 (38.64%), Postives = 79/132 (59.85%), Query Frame = -2
Query:  334 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD-ATEVNHE 726
            +D+I   R  +   G     R + ++L ++DG S+   + +I ATNR DI+DPA++R GRLD+ I +P P E++R  IL+ + RK  V  DV+ E LA+ T+ F+GA L  +C  A  LA+R    +E+  E
Sbjct:  579 LDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRE 710          

HSP 2 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 51/132 (38.64%), Postives = 78/132 (59.09%), Query Frame = -2
Query:  331 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 726
            +DAI  KR   +  G+ E +R + +LL  +DG      + V+AATNR + +DPAL R GR DR++++  P    R  ILQIH++ M +  DV+ E++A  T    GA L A+C EA + A+R+    ++ ED
Sbjct:  306 LDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: TERA_BOVIN (Transitional endoplasmic reticulum ATPase OS=Bos taurus GN=VCP PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.076e-19
Identity = 51/132 (38.64%), Postives = 79/132 (59.85%), Query Frame = -2
Query:  334 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD-ATEVNHE 726
            +D+I   R  +   G     R + ++L ++DG S+   + +I ATNR DI+DPA++R GRLD+ I +P P E++R  IL+ + RK  V  DV+ E LA+ T+ F+GA L  +C  A  LA+R    +E+  E
Sbjct:  579 LDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRE 710          

HSP 2 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 51/132 (38.64%), Postives = 78/132 (59.09%), Query Frame = -2
Query:  331 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 726
            +DAI  KR   +  G+ E +R + +LL  +DG      + V+AATNR + +DPAL R GR DR++++  P    R  ILQIH++ M +  DV+ E++A  T    GA L A+C EA + A+R+    ++ ED
Sbjct:  306 LDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH_BUCBP (Cell division protease ftsH OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ftsH PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.076e-19
Identity = 52/133 (39.10%), Postives = 81/133 (60.90%), Query Frame = -2
Query:  328 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDF 726
            IDA+G +R      G  E ++T+ ++L ++DGF  ++ I +IAATNR D+LDPAL+R GR DR+I +  P    R +I+Q+H +K+ +  +V+   +AR T  F+GA L  +  EA + A R +   V   DF
Sbjct:  253 IDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFDGNEGIILIAATNRPDVLDPALLRPGRFDRQIFVALPDIRGREKIIQVHMKKVPLGNNVDPMIIARGTPGFSGADLANLVNEAALFAARNNRDVVMMSDF 385          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH2_HAEIN (Cell division protease ftsH homolog 2 OS=Haemophilus influenzae GN=ftsH-B PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.076e-19
Identity = 52/132 (39.39%), Postives = 81/132 (61.36%), Query Frame = -2
Query:  322 IGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNE 717
            +G +R      G  E ++T+ ++L ++DGFS +D + VIAATNR D+LDPAL R GR DR++ +  P  + R +IL++H RK++V  DV+   LAR T  ++GA L  +  EA + A R +   V   +F +
Sbjct:    1 MGRQRGAGLGGGHDEREQTLNQMLVEMDGFSGNDGVIVIAATNRPDVLDPALTRPGRFDRQVVVGLPDVKGREQILKVHMRKVSVAQDVDAMTLARGTPGYSGADLANLVNEAALFAARVNKRTVTMLEFEK 132          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: TERA_DANRE (Transitional endoplasmic reticulum ATPase OS=Danio rerio GN=vcp PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.018e-19
Identity = 48/122 (39.34%), Postives = 75/122 (61.48%), Query Frame = -2
Query:  361 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 726
            +D+I   R  +   G     R + ++L ++DG SS   + +I ATNR DI+DPA++R GRLD+ I +P P E++R  IL+ + RK  +  DV+ + LA+ T+ F+GA L  +C  A  LA+R
Sbjct:  579 LDSIAKARGGNVGDGGGAADRVINQILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRIAILKANLRKSPISKDVDLDFLAKMTNGFSGADLTEICQRACKLAIR 700          

HSP 2 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 51/132 (38.64%), Postives = 78/132 (59.09%), Query Frame = -2
Query:  331 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 726
            +DAI  KR   +  G+ E +R + +LL  +DG      + V+AATNR + +DPAL R GR DR++++  P    R  ILQIH++ M +  DV+ E++A  T    GA L A+C EA + A+R+    ++ ED
Sbjct:  306 LDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: CDAT_PLAF7 (Putative cell division cycle ATPase OS=Plasmodium falciparum (isolate 3D7) GN=PF07_0047 PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.248e-19
Identity = 55/148 (37.16%), Postives = 85/148 (57.43%), Query Frame = -2
Query:  292 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDA--TEVNHEDFNEGI-IQVQAKKK 726
            ID+I  KR     S +   +R + +LL  +DG   ++ + V+AATNR + +DPAL R GR DR+IE+P P E+ R  IL   ++KM + PDVN  ++A+    + GA L  +C EA +  ++      +++ EDF E + I V   KK
Sbjct:  629 IDSIANKR---SKSNNELEKRVVSQLLTLMDGLKKNNNVLVLAATNRPNSIDPALRRFGRFDREIEIPVPDEQGRYEILLTKTKKMKLDPDVNLRKIAKECHGYVGADLAQLCFEAAIQCIKEHIHFLDLDEEDFIEFMKISVDEDKK 773          

HSP 2 Score: 71.633 bits (174), Expect = 4.757e-12
Identity = 40/116 (34.48%), Postives = 68/116 (58.62%), Query Frame = -2
Query:  379 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEA 726
            ID++  +R +S  + D    R + ++L ++DG +    I +IAATNR DILD AL R GRLD+ I +  P  ++R  I +   +   ++ DV+  ++A+ T+ F+GA +  +C  A
Sbjct: 1036 IDSLAKER-NSNTNNDAS-DRVINQILTEIDGINEKKTIFIIAATNRPDILDKALTRPGRLDKLIYISLPDLKSRYSIFKAILKNTPLNEDVDIHDMAKRTEGFSGADITNLCQSA 1149          
The following BLAST results are available for this feature:
BLAST of CN189408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
FTSH3_SYNY32.356e-1938.19Cell division protease ftsH homolog 3 OS=Synechocy... [more]
TERA_RAT3.076e-1938.64Transitional endoplasmic reticulum ATPase OS=Rattu... [more]
TERA_PIG3.076e-1938.64Transitional endoplasmic reticulum ATPase OS=Sus s... [more]
TERA_MOUSE3.076e-1938.64Transitional endoplasmic reticulum ATPase OS=Mus m... [more]
TERA_HUMAN3.076e-1938.64Transitional endoplasmic reticulum ATPase OS=Homo ... [more]
TERA_BOVIN3.076e-1938.64Transitional endoplasmic reticulum ATPase OS=Bos t... [more]
FTSH_BUCBP3.076e-1939.10Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSH2_HAEIN3.076e-1939.39Cell division protease ftsH homolog 2 OS=Haemophil... [more]
TERA_DANRE4.018e-1939.34Transitional endoplasmic reticulum ATPase OS=Danio... [more]
CDAT_PLAF75.248e-1937.16Putative cell division cycle ATPase OS=Plasmodium ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001M24_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189408 ID=CN189408; Name=CN189408; organism=Citrus sinensis; type=EST; length=727bp
TTTTTTTTTTTTTTTTTATGGTACCGTCGCATTTCCTTTCCATCAACATA
CATCCTCTAACACGAGTAAAAATATCTCAAGAGTAACAGTTTGACTTTCA
TCACATTAAAAAAAATTATCACGCGGCTGACTTGGGAGTTTCACTTCTTA
TTATAACATATTATGTACAGTACAAAGACAATGTTTAATACCCATTTTTT
AATATTCAACCCAAAATATATTAATTACCAATTGAAGTAGAGGCTAAAAC
TTCGCCTTTGGATGTGTCTATGCATAGTAGTTTAAGCTAGCCTTTTTCTT
AGCCTGCACCTGAATGATACCTTCATTGAAATCCTCATGGTTGACCTCAG
TCGCATCACGGCGAAGAGCAAGCATCCCTGCTTCAACACAAACAGCTTTT
AGTTGTGCCCCATTGAAATCGTCAGTGGATCGAGCAAGTTCTTCGAAGTT
GACATCCGGGTGAACAGTCATCTTCCTCGAATGGATTTGCAAAATGCGAG
CTCTAGCTTCCTCACTCGGATGTGGTAACTCGATCTTGCGATCCAAACGG
CCAGATCGCATAAGAGCAGGGTCCAGGATATCAGCACGATTTGTTGCTGC
TATGACCTTAATCCGATCATCGCTGCTAAATCCATCGAGCTGATTGAGCA
ACTCTAACATAGTTCGCTGCACCTCCCTGTCTCCACTCACTTCACTGTCA
AACCGCTTTGTACCAATTGCGTCAATT
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