CN189408

Overview
NameCN189408
Unique NameCN189408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.129e-40
Identity = 81/145 (55.86%), Postives = 105/145 (72.41%), Query Frame = -2
Query:  292 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 726
            IDAIGTKR+DS   G+RE+QRTMLELLNQLDGF S   +KVI ATNR + LDPAL+R GR+DRKIE P P E+ + RI QIH+ +MT+  DV  ++L  + DD +GA +KA+C EAG++ALR    +V +EDF +    V  KK+
Sbjct:  287 IDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQ 431          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS4_CHICK (26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.043e-40
Identity = 79/135 (58.52%), Postives = 101/135 (74.81%), Query Frame = -2
Query:  322 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNE 726
            IDAIGTKR+DS   G+RE+QRTMLELLNQLDGF S   +KVI ATNR + LDPAL+R GR+DRKIE P P E+ + RI QIH+ +MT+  DV  +EL  + DD +GA +KA+C EAG++ALR    +V +EDF +
Sbjct:  287 IDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKK 421          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS4_DICDI (26S protease regulatory subunit 4 homolog OS=Dictyostelium discoideum GN=psmC1 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.049e-39
Identity = 79/146 (54.11%), Postives = 103/146 (70.55%), Query Frame = -2
Query:  289 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKA 726
            IDA+GTKR+DS+  G+RE+QRTMLELLNQLDGF +   +KVI ATNR + LDPAL+R GR+DRKIE P P  + + +I +IH+ KM +  DVN EE   S DD +GA +KA+C E+G+LALR     V H DF +   +V  +K A
Sbjct:  286 IDAVGTKRYDSQSGGEREIQRTMLELLNQLDGFDARTDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDIKTKRKIFEIHTAKMNLSEDVNLEEFVMSKDDLSGADIKAICTESGLLALRERRMRVTHTDFKKAKEKVLYRKTA 431          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS4_CAEEL (Probable 26S protease regulatory subunit 4 OS=Caenorhabditis elegans GN=rpt-2 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.676e-39
Identity = 80/145 (55.17%), Postives = 103/145 (71.03%), Query Frame = -2
Query:  292 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 726
            IDA+GTKR+DS   G+RE+QRTMLELLNQLDGF S   +KV+ ATNR + LDPAL+R GR+DRKIE P P E+ + RI QIH+ +MT+  +VN EE   + D+ +GA +KA+C EAG+LALR     V  EDF +    V  +KK
Sbjct:  290 IDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVLMATNRIESLDPALIRPGRIDRKIEFPLPDEKTKRRIFQIHTSRMTLGKEVNLEEFITAKDELSGADIKAMCTEAGLLALRERRMRVTMEDFQKSKENVLYRKK 434          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS10_DICDI (26S protease regulatory subunit S10B OS=Dictyostelium discoideum GN=psmC6 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.328e-38
Identity = 76/145 (52.41%), Postives = 103/145 (71.03%), Query Frame = -2
Query:  292 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 726
            IDAIG +RF    S DRE+QRT++ELLNQ+DGF +  ++K+I ATNR D+LDPAL+R GRLDRKIE+P P+E  R  +L+IH+  +T H DV++E +A+  D FN A L+ VC EAGM A+R +   V  EDF + + + Q  KK
Sbjct:  239 IDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLSKVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHAANITKHGDVDYEAIAKLADGFNAADLRNVCTEAGMFAIRAERDYVMEEDFMKAVRKCQEAKK 383          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PS10A_ARATH (26S protease regulatory subunit 10B homolog A OS=Arabidopsis thaliana GN=RPT4A PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.959e-38
Identity = 76/152 (50.00%), Postives = 111/152 (73.03%), Query Frame = -2
Query:  274 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV-QAKKKASLNYY 726
            IDAIG +RF    S DRE+QRT++ELLNQLDGF +  ++K+I ATNR D+LDPAL+R GRLDRKIE+P P+E++R  IL+IH+  +  H ++++E + +  + FNGA L+ +C EAGM A+R +   V HEDF + + ++ +AKK  S ++Y
Sbjct:  241 IDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDNLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYEAIVKLAEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMKAVRKLSEAKKLESSSHY 392          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PS10B_ARATH (26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.865e-38
Identity = 76/152 (50.00%), Postives = 110/152 (72.37%), Query Frame = -2
Query:  274 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV-QAKKKASLNYY 726
            IDAIG +RF    S DRE+QRT++ELLNQLDGF    ++K+I ATNR D+LDPAL+R GRLDRKIE+P P+E++R  IL+IH+  +  H ++++E + +  + FNGA L+ +C EAGM A+R +   V HEDF + + ++ +AKK  S ++Y
Sbjct:  241 IDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYEAIVKLGEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMKAVRKLSEAKKLESSSHY 392          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS8_ENCCU (26S protease regulatory subunit 8 homolog OS=Encephalitozoon cuniculi GN=RPT6 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.865e-38
Identity = 85/149 (57.05%), Postives = 102/149 (68.46%), Query Frame = -2
Query:  280 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLN 726
            ID+IG+ R DS    D EVQRTMLELLNQLDGF S + IKVI ATNR DILDPAL+R+GR+DRKIE P P+E AR  IL+IHSRKM +   ++ E +A      +GA++KAVC EAGM ALR     V  EDF   + +V  KK   LN
Sbjct:  298 IDSIGSTRGDSNKGSDSEVQRTMLELLNQLDGFESHNNIKVIMATNRIDILDPALLRTGRIDRKIEFPPPNESARLEILKIHSRKMNLTKGIDLETIASKMVGCSGAEVKAVCTEAGMYALRERRVHVTQEDFEMAVHKV-LKKTGDLN 445          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS8_MANSE (26S protease regulatory subunit 8 OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.592e-38
Identity = 81/143 (56.64%), Postives = 98/143 (68.53%), Query Frame = -2
Query:  298 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 726
            ID+IG+ R +S   GD EVQRTMLELLNQLDGF +   IKVI ATNR DILDPAL+R GR+DRKIE P P+EEAR  IL+IHSRKM +   +N  ++A      +GA++K VC EAGM ALR     V  EDF   + +V  K
Sbjct:  247 IDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 389          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS8_DROME (26S protease regulatory subunit 8 OS=Drosophila melanogaster GN=Pros45 PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 6.592e-38
Identity = 81/143 (56.64%), Postives = 98/143 (68.53%), Query Frame = -2
Query:  298 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 726
            ID+IG+ R +S   GD EVQRTMLELLNQLDGF +   IKVI ATNR DILDPAL+R GR+DRKIE P P+EEAR  IL+IHSRKM +   +N  ++A      +GA++K VC EAGM ALR     V  EDF   + +V  K
Sbjct:  250 IDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 392          
The following BLAST results are available for this feature:
BLAST of CN189408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
PRS4_HUMAN4.129e-4055.8626S protease regulatory subunit 4 OS=Homo sapiens ... [more]
PRS4_CHICK7.043e-4058.5226S protease regulatory subunit 4 OS=Gallus gallus... [more]
PRS4_DICDI2.049e-3954.1126S protease regulatory subunit 4 homolog OS=Dicty... [more]
PRS4_CAEEL2.676e-3955.17Probable 26S protease regulatory subunit 4 OS=Caen... [more]
PRS10_DICDI1.328e-3852.4126S protease regulatory subunit S10B OS=Dictyostel... [more]
PS10A_ARATH2.959e-3850.0026S protease regulatory subunit 10B homolog A OS=A... [more]
PS10B_ARATH3.865e-3850.0026S protease regulatory subunit S10B homolog B OS=... [more]
PRS8_ENCCU3.865e-3857.0526S protease regulatory subunit 8 homolog OS=Encep... [more]
PRS8_MANSE6.592e-3856.6426S protease regulatory subunit 8 OS=Manduca sexta... [more]
PRS8_DROME6.592e-3856.6426S protease regulatory subunit 8 OS=Drosophila me... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001M24_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189408 ID=CN189408; Name=CN189408; organism=Citrus sinensis; type=EST; length=727bp
TTTTTTTTTTTTTTTTTATGGTACCGTCGCATTTCCTTTCCATCAACATA
CATCCTCTAACACGAGTAAAAATATCTCAAGAGTAACAGTTTGACTTTCA
TCACATTAAAAAAAATTATCACGCGGCTGACTTGGGAGTTTCACTTCTTA
TTATAACATATTATGTACAGTACAAAGACAATGTTTAATACCCATTTTTT
AATATTCAACCCAAAATATATTAATTACCAATTGAAGTAGAGGCTAAAAC
TTCGCCTTTGGATGTGTCTATGCATAGTAGTTTAAGCTAGCCTTTTTCTT
AGCCTGCACCTGAATGATACCTTCATTGAAATCCTCATGGTTGACCTCAG
TCGCATCACGGCGAAGAGCAAGCATCCCTGCTTCAACACAAACAGCTTTT
AGTTGTGCCCCATTGAAATCGTCAGTGGATCGAGCAAGTTCTTCGAAGTT
GACATCCGGGTGAACAGTCATCTTCCTCGAATGGATTTGCAAAATGCGAG
CTCTAGCTTCCTCACTCGGATGTGGTAACTCGATCTTGCGATCCAAACGG
CCAGATCGCATAAGAGCAGGGTCCAGGATATCAGCACGATTTGTTGCTGC
TATGACCTTAATCCGATCATCGCTGCTAAATCCATCGAGCTGATTGAGCA
ACTCTAACATAGTTCGCTGCACCTCCCTGTCTCCACTCACTTCACTGTCA
AACCGCTTTGTACCAATTGCGTCAATT
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