CN189408

Overview
NameCN189408
Unique NameCN189408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: SPAT5_HUMAN (Spermatogenesis-associated protein 5 OS=Homo sapiens GN=SPATA5 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 53/153 (34.64%), Postives = 83/153 (54.25%), Query Frame = -2
Query:  274 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD--ATEVNHEDFNEGIIQVQAKKKASLNYY 726
            +DA+  +R  S  +G+    R + +LL ++DG      + ++AATNR D +D ALMR GR+DR I +P P    R  I ++    M V  +V+ +EL   TD ++GA++ AVC EA +LAL  D  A  +    F + +  V  +   SL  +
Sbjct:  729 LDALAVERGSSLGAGN-VADRVLAQLLTEMDGIEQLKDVTILAATNRPDRIDKALMRPGRIDRIIYVPLPDAATRREIFKLQFHSMPVSNEVDLDELILQTDAYSGAEIVAVCREAALLALEEDIQANLIMKRHFTQALSTVTPRIPESLRRF 880          

HSP 2 Score: 73.1738 bits (178), Expect = 1.635e-12
Identity = 44/124 (35.48%), Postives = 72/124 (58.06%), Query Frame = -2
Query:  358 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMT-VHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 726
            +DA+  KR  ++   ++ V  ++L L++ +    S+ ++ V+ ATNR   LD AL R GR D++IE+  P+ + R  ILQ   R++  +  +    +LA S   + GA LK +C EAG+ ALRR
Sbjct:  455 LDALCPKREGAQNEVEKRVVASLLTLMDGIGSEVSEGQVLVLGATNRPHALDAALRRPGRFDKEIEIGVPNAQDRLDILQKLLRRVPHLLTEAELLQLANSAHGYVGADLKVLCNEAGLCALRR 578          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH6_ORYSJ (Cell division protease ftsH homolog 6, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH6 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 52/143 (36.36%), Postives = 80/143 (55.94%), Query Frame = -2
Query:  301 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDR-IKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 726
            IDA+G +R      G+ E ++T+ +LL ++DGF   D  + VIAATNR +ILD AL+R GR DR++ +  P    R  IL +H     + P V+   +A  T  F+GA L  +  EA +LA RR    +   + ++ I ++ A
Sbjct:  322 IDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFGGGDGGVVVIAATNRPEILDAALLRPGRFDRRVSVGLPDVRGREEILLVHGANKRLDPGVSLAVVAMRTPGFSGADLANLMNEAAILAGRRGKDRITVSEIDDSIDRIVA 464          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: CD48E_ARATH (Cell division control protein 48 homolog E OS=Arabidopsis thaliana GN=CDC48E PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 49/132 (37.12%), Postives = 79/132 (59.85%), Query Frame = -2
Query:  331 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 726
            ID+I  KR   + +G+ E +R + +LL  +DG  S   + V+ ATNR + +DPAL R GR DR+I++  P E  R  +L+IH++ M +  DV+ E +++ T  + GA L A+C EA +  +R     ++ ED
Sbjct:  309 IDSIAPKR--EKTNGEVE-RRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 437          

HSP 2 Score: 88.1965 bits (217), Expect = 4.912e-17
Identity = 46/124 (37.10%), Postives = 72/124 (58.06%), Query Frame = -2
Query:  355 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD 726
            +D+I T+R +S         R + +LL ++DG ++   + +I ATNR DI+D AL+R GRLD+ I +P P E++R  I +   RK  V  DV+   LA+ T  F+GA +  +C  A   A+R +
Sbjct:  582 LDSIATQRGNSAGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKACLRKSPVAKDVDVTALAKYTQGFSGADITEICQRACKYAIREN 705          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: CD48A_ARATH (Cell division control protein 48 homolog A OS=Arabidopsis thaliana GN=CDC48A PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 49/132 (37.12%), Postives = 79/132 (59.85%), Query Frame = -2
Query:  331 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 726
            ID+I  KR   + +G+ E +R + +LL  +DG  S   + V+ ATNR + +DPAL R GR DR+I++  P E  R  +L+IH++ M +  DV+ E +++ T  + GA L A+C EA +  +R     ++ ED
Sbjct:  309 IDSIAPKR--EKTNGEVE-RRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 437          

HSP 2 Score: 84.7297 bits (208), Expect = 5.430e-16
Identity = 46/125 (36.80%), Postives = 72/125 (57.60%), Query Frame = -2
Query:  355 IDAIGTKRFD-SEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD 726
            +D+I T+R   S   G     R + +LL ++DG ++   + +I ATNR DI+D AL+R GRLD+ I +P P E++R  I +   RK  +  DV+   LA+ T  F+GA +  +C  A   A+R +
Sbjct:  582 LDSIATQRGGGSGGDGGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKAALRKSPIAKDVDIGALAKYTQGFSGADITEICQRACKYAIREN 706          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH9_ARATH (Cell division protease ftsH homolog 9, chloroplastic OS=Arabidopsis thaliana GN=FTSH9 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.293e-17
Identity = 54/137 (39.42%), Postives = 78/137 (56.93%), Query Frame = -2
Query:  328 IDAIGTKRFDS--EVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIH--SRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDF 726
            IDA+   R      VS D E ++T+ +LL ++DGF S   + V+ ATNRAD+LDPAL R GR DR + +  P +  R  IL++H   +++ +  DVN   +A  T  F GA L  +  EA +LA R+    V+  DF
Sbjct:  430 IDAVAKSRDGKFRMVSND-EREQTLNQLLTEMDGFDSSSAVIVLGATNRADVLDPALRRPGRFDRVVTVESPDKVGRESILKVHVSKKELPLGDDVNLASIASMTTGFTGADLANLVNEAALLAGRKSKMTVDKIDF 565          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: RCA1_YEAST (Mitochondrial respiratory chain complexes assembly protein RCA1 OS=Saccharomyces cerevisiae GN=RCA1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.688e-17
Identity = 55/144 (38.19%), Postives = 79/144 (54.86%), Query Frame = -2
Query:  307 IDAIGTKRFDSEVSG-DREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFE---ELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 726
            IDAIG  R     SG + E + T+ ++L ++DGF+  D + V+A TNR DILD AL+R GR DR I +  P  E R  I  +H   + +  ++ F+    LA  T  F+GA +  VC EA ++A R D   V    F + I +V
Sbjct:  449 IDAIGKARQKGNFSGANDERENTLNQMLVEMDGFTPADHVVVLAGTNRPDILDKALLRPGRFDRHINIDKPELEGRKAIFAVHLHHLKLAGEI-FDLKNRLAALTPGFSGADIANVCNEAALIAARSDEDAVKLNHFEQAIERV 591          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: TERA_DROME (Transitional endoplasmic reticulum ATPase TER94 OS=Drosophila melanogaster GN=TER94 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.205e-17
Identity = 49/132 (37.12%), Postives = 77/132 (58.33%), Query Frame = -2
Query:  331 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 726
            IDAI  KR   +  G+ E +R + +LL  +DG      + V+AATNR + +DPAL R GR DR+I++  P    R  +L+IH++ M +H DV+ E++A  +    GA L ++C EA +  +R     ++ ED
Sbjct:  303 IDAIAPKR--DKTHGEVE-RRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEVLRIHTKNMKLHDDVDLEQIAAESHGHVGADLASLCSEAALQQIREKMDLIDLED 431          

HSP 2 Score: 84.3445 bits (207), Expect = 7.092e-16
Identity = 42/123 (34.15%), Postives = 72/123 (58.54%), Query Frame = -2
Query:  358 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 726
            +D+I   R  +         R + ++L ++DG  +   + +I ATNR DI+DPA++R GRLD+ I +P P +++R  IL+ + RK  +  +V+   +A+ T  F+GA L  +C  A  LA+R+
Sbjct:  576 LDSIAKARGGNVGDAGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDDKSREAILKANLRKSPLAKEVDLTYIAKVTQGFSGADLTEICQRACKLAIRQ 698          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSHA_ARATH (Cell division protease ftsH homolog 10, mitochondrial OS=Arabidopsis thaliana GN=FTSH10 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.205e-17
Identity = 55/143 (38.46%), Postives = 79/143 (55.24%), Query Frame = -2
Query:  307 IDAIGTKRFDSEVSGDR-EVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTV--HPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 726
            IDAIG  R     SG   E + T+ +LL ++DGF +   + V+A TNR DILD AL+R GR DR+I +  P  + R +I QI+ +K+ +   P    + LA  T  F GA +  VC EA ++A R +   V    F+  I +V
Sbjct:  428 IDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARHEGATVTMAHFDSAIDRV 570          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: CDC48_ENCCU (Cell division control protein 48 OS=Encephalitozoon cuniculi GN=CDC48 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.205e-17
Identity = 48/122 (39.34%), Postives = 73/122 (59.84%), Query Frame = -2
Query:  361 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 726
            ID+I   R  ++ S      R + +LL+++DG +    + VI ATNR D LD ALMR GRLD+ + +P P  ++R  ILQ   +K  + P+++  +LA +TD F+GA L  +C  A  LA+R
Sbjct:  583 IDSIAKARSGNDGSSGA-TDRMLNQLLSEMDGINQKKNVFVIGATNRPDQLDSALMRPGRLDQLVYIPLPDLDSRVSILQATLKKTPLSPEIDLRQLAEATDKFSGADLSEICQRACKLAIR 703          

HSP 2 Score: 85.1149 bits (209), Expect = 4.158e-16
Identity = 50/148 (33.78%), Postives = 81/148 (54.73%), Query Frame = -2
Query:  283 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASL 726
            IDA+  KR  S+   +R   R + +LL  +DG  +   + V+ ATNR + +DPAL R GR DR+IE+  P E  R  IL+IH++ M +  DV+   + +    F G+ L ++C EA +  +R    +++ +       ++ AK  ASL
Sbjct:  310 IDALAPKREKSQGEVER---RIVSQLLTLMDGMKARSNVIVLGATNRPNSIDPALRRYGRFDREIEIGVPDETGRLEILRIHTKNMKMSEDVDLVAINKELHGFTGSDLASLCSEAALQQIREKLPQIDLDS-----EKIDAKVLASL 449          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: AFG3_YEAST (Mitochondrial respiratory chain complexes assembly protein AFG3 OS=Saccharomyces cerevisiae GN=AFG3 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.205e-17
Identity = 54/150 (36.00%), Postives = 83/150 (55.33%), Query Frame = -2
Query:  301 IDAIGTKRFDSEVSGDREVQR--TMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHP----DVN--FEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 726
            IDAIG +R      G    +R  T+ +LL ++DGF++ D++ V+A TNR D+LD ALMR GR DR I++  P    R +I  +H +++ + P    D+N    +LA  T  F GA +   C EA ++A R +   +    F + I +V A
Sbjct:  389 IDAIGKERGKGGALGGANDEREATLNQLLVEMDGFTTSDQVVVLAGTNRPDVLDNALMRPGRFDRHIQIDSPDVNGRQQIYLVHLKRLNLDPLLTDDMNNLSGKLATLTPGFTGADIANACNEAALIAARHNDPYITIHHFEQAIERVIA 538          
The following BLAST results are available for this feature:
BLAST of CN189408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
SPAT5_HUMAN9.896e-1834.64Spermatogenesis-associated protein 5 OS=Homo sapie... [more]
FTSH6_ORYSJ9.896e-1836.36Cell division protease ftsH homolog 6, chloroplast... [more]
CD48E_ARATH9.896e-1837.12Cell division control protein 48 homolog E OS=Arab... [more]
CD48A_ARATH9.896e-1837.12Cell division control protein 48 homolog A OS=Arab... [more]
FTSH9_ARATH1.293e-1739.42Cell division protease ftsH homolog 9, chloroplast... [more]
RCA1_YEAST1.688e-1738.19Mitochondrial respiratory chain complexes assembly... [more]
TERA_DROME2.205e-1737.12Transitional endoplasmic reticulum ATPase TER94 OS... [more]
FTSHA_ARATH2.205e-1738.46Cell division protease ftsH homolog 10, mitochondr... [more]
CDC48_ENCCU2.205e-1739.34Cell division control protein 48 OS=Encephalitozoo... [more]
AFG3_YEAST2.205e-1736.00Mitochondrial respiratory chain complexes assembly... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001M24_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189408 ID=CN189408; Name=CN189408; organism=Citrus sinensis; type=EST; length=727bp
TTTTTTTTTTTTTTTTTATGGTACCGTCGCATTTCCTTTCCATCAACATA
CATCCTCTAACACGAGTAAAAATATCTCAAGAGTAACAGTTTGACTTTCA
TCACATTAAAAAAAATTATCACGCGGCTGACTTGGGAGTTTCACTTCTTA
TTATAACATATTATGTACAGTACAAAGACAATGTTTAATACCCATTTTTT
AATATTCAACCCAAAATATATTAATTACCAATTGAAGTAGAGGCTAAAAC
TTCGCCTTTGGATGTGTCTATGCATAGTAGTTTAAGCTAGCCTTTTTCTT
AGCCTGCACCTGAATGATACCTTCATTGAAATCCTCATGGTTGACCTCAG
TCGCATCACGGCGAAGAGCAAGCATCCCTGCTTCAACACAAACAGCTTTT
AGTTGTGCCCCATTGAAATCGTCAGTGGATCGAGCAAGTTCTTCGAAGTT
GACATCCGGGTGAACAGTCATCTTCCTCGAATGGATTTGCAAAATGCGAG
CTCTAGCTTCCTCACTCGGATGTGGTAACTCGATCTTGCGATCCAAACGG
CCAGATCGCATAAGAGCAGGGTCCAGGATATCAGCACGATTTGTTGCTGC
TATGACCTTAATCCGATCATCGCTGCTAAATCCATCGAGCTGATTGAGCA
ACTCTAACATAGTTCGCTGCACCTCCCTGTCTCCACTCACTTCACTGTCA
AACCGCTTTGTACCAATTGCGTCAATT
back to top