CN189408

Overview
NameCN189408
Unique NameCN189408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: NVL_HUMAN (Nuclear valosin-containing protein-like OS=Homo sapiens GN=NVL PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.912e-17
Identity = 53/123 (43.09%), Postives = 71/123 (57.72%), Query Frame = -2
Query:  358 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 726
            IDAI  KR  +    +R +   +L  ++ L+  ++  R+ VI ATNR D LDPAL R+GR DR+I L  P E +R RILQ   RK+ +    +F  LA  T  F GA L A+C EA M A+ R
Sbjct:  366 IDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREICLGIPDEASRERILQTLCRKLRLPQAFDFCHLAHLTPGFVGADLMALCREAAMCAVNR 488          

HSP 2 Score: 77.0258 bits (188), Expect = 1.132e-13
Identity = 54/168 (32.14%), Postives = 88/168 (52.38%), Query Frame = -2
Query:  277 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHP---DVNFEELARS--TDDFNGAQLKAVCVEAGMLALRRDAT-----------EVNHEDFNEGIIQVQA--KKKASLNY 726
            +DA+  +R D E        R + +LL ++DG  +  ++ ++AATNR DI+DPA++R GRLD+ + +  P    R  IL+  ++  T  P   DVN E +A     D + GA L A+  EA + ALR++             +V+H+ F E   +V++   KK  + Y
Sbjct:  683 VDALCPRRSDRETGAS---VRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSSISKKDQIMY 847          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: CDC48_YEAST (Cell division control protein 48 OS=Saccharomyces cerevisiae GN=CDC48 PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 4.912e-17
Identity = 48/140 (34.29%), Postives = 83/140 (59.29%), Query Frame = -2
Query:  313 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR--DATEVNHEDFNEGII 726
            ID+I  KR   + +G+ E +R + +LL  +DG  +   + VIAATNR + +DPAL R GR DR++++  P    R  +L+IH++ M +  DV+ E LA  T  + GA + ++C EA M  +R   D  +++ ++ +  ++
Sbjct:  316 IDSIAPKR--DKTNGEVE-RRVVSQLLTLMDGMKARSNVVVIAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEVLRIHTKNMKLADDVDLEALAAETHGYVGADIASLCSEAAMQQIREKMDLIDLDEDEIDAEVL 452          

HSP 2 Score: 82.4185 bits (202), Expect = 2.695e-15
Identity = 47/143 (32.87%), Postives = 77/143 (53.85%), Query Frame = -2
Query:  298 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 726
            +D+I   R  S         R + +LL ++DG ++   + VI ATNR D +DPA++R GRLD+ I +P P E AR  IL    RK  + P +    +A++T  F+GA L  +   A   A+ +D+ E + +   E  ++V+ +
Sbjct:  589 LDSIAKARGGSLGDAGGASDRVVNQLLTEMDGMNAKKNVFVIGATNRPDQIDPAILRPGRLDQLIYVPLPDENARLSILNAQLRKTPLEPGLELTAIAKATQGFSGADLLYIVQRAAKYAI-KDSIEAHRQHEAEKEVKVEGE 730          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: CDC48_SCHPO (Cell division cycle protein 48 OS=Schizosaccharomyces pombe GN=cdc48 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.094e-16
Identity = 47/140 (33.57%), Postives = 84/140 (60.00%), Query Frame = -2
Query:  313 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR--DATEVNHEDFNEGII 726
            ID+I  KR   + +G+ E +R + +LL  +DG  +   + V+AATNR + +DPAL R GR DR++++  P    R  IL+IH++ M +  DV+ E++A  T  + G+ L ++C EA M  +R   D  +++ ++ +  ++
Sbjct:  326 IDSIAPKR--EKTNGEVE-RRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPALRRFGRFDREVDVGIPDPTGRLEILRIHTKNMKLADDVDLEQIAAETHGYVGSDLASLCSEAAMQQIREKMDMIDLDEDEIDAEVL 462          

HSP 2 Score: 86.6557 bits (213), Expect = 1.429e-16
Identity = 54/121 (44.63%), Postives = 73/121 (60.33%), Query Frame = -2
Query:  322 GDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNE 684
            GDR V     +LL ++DG +S   + VI ATNR D +DPALMR GRLD+ I +P P EEAR  ILQ   R   V  DV+   +A++T  F+GA L+ V   A  LA+ +D+ E + +  NE
Sbjct:  616 GDRVVN----QLLTEMDGVNSKKNVFVIGATNRPDQIDPALMRPGRLDQLIYVPLPDEEARFSILQTQLRHTPVAEDVDLRAVAKATHGFSGADLEFVVQRAVKLAI-KDSIEEDIKRENE 731          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH9_ORYSJ (Cell division protease ftsH homolog 9, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH9 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.429e-16
Identity = 48/109 (44.04%), Postives = 67/109 (61.47%), Query Frame = -2
Query:  400 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQL 726
            IDA+G+ R   E       ++T+ +LL ++DGF  ++ I V+AATN  DILDPAL R GR DR I +P+P    R  IL+++ +   V  DV+   +ARST  FNGA L
Sbjct:  429 IDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIIVMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPVSSDVDVNAIARSTPGFNGADL 533          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: YB7A_SCHPO (Uncharacterized AAA domain-containing protein C16E9.10c OS=Schizosaccharomyces pombe GN=SPBC16E9.10c PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.866e-16
Identity = 48/130 (36.92%), Postives = 80/130 (61.54%), Query Frame = -2
Query:  340 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDR-IKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVN 726
            IDA+  KR  ++   +R +    L  +++L    +D + + VI ATNR D LD AL R+GR DR+I L  PS++AR +IL+  ++ + +  D +F +LA+ T  + GA LKA+   AG++A++R   E++
Sbjct:  276 IDAVTPKRESAQREMERRIVAQFLTCMDELSFEKTDGKPVLVIGATNRPDSLDSALRRAGRFDREICLTVPSQDAREKILRTMAKGLKLSGDFDFRQLAKQTPGYVGADLKALTAAAGIIAIKRIFNEIS 405          

HSP 2 Score: 81.2629 bits (199), Expect = 6.004e-15
Identity = 49/124 (39.52%), Postives = 71/124 (57.26%), Query Frame = -2
Query:  361 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARS--TDDFNGAQLKAVCVEAGMLALR 726
            +DA+  +R DS       V  T   LL +LDG S    + VIAATNR DI+DPA++R GRLD+ + +  P    R  IL+  +++  +H +VN + L R     +F+GA L A+  EA + ALR
Sbjct:  594 LDAMVPRRDDSLSEASSRVVNT---LLTELDGLSDRSGVYVIAATNRPDIIDPAMLRPGRLDKTLLVDLPDAHERVEILKTLTKQTPLHEEVNLDVLGRDERCSNFSGADLAALVREAAVTALR 714          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: ATAD2_PONAB (ATPase family AAA domain-containing protein 2 OS=Pongo abelii GN=ATAD2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.438e-16
Identity = 47/99 (47.47%), Postives = 59/99 (59.60%), Query Frame = -2
Query:  358 LLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHP-DVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 651
            LL  +DG  S   I VI ATNR D +DPAL R GR DR+     P +EAR  IL+IH+R     P D   EELA +   + GA +K++C EA + ALRR
Sbjct:  386 LLALMDGLDSRGEIVVIGATNRLDAIDPALRRPGRFDREFLFSLPDKEARKEILKIHTRDWNPKPLDTFLEELAENCVGYRGADIKSICAEAALCALRR 484          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: TERA1_CAEEL (Transitional endoplasmic reticulum ATPase homolog 1 OS=Caenorhabditis elegans GN=cdc-48.1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.184e-16
Identity = 50/132 (37.88%), Postives = 76/132 (57.58%), Query Frame = -2
Query:  331 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 726
            IDAI  KR   + +G+ E +R + +LL  +DG      + VIAATNR + +D AL R GR DR+I++  P    R  IL+IH++ M +  DV+ E++A     F GA L ++C EA +  +R     ++ ED
Sbjct:  312 IDAIAPKR--EKTNGEVE-RRIVSQLLTLMDGVKGRSNLVVIAATNRPNSIDGALRRFGRFDREIDIGIPDAVGRLEILRIHTKNMKLADDVDLEQIANECHGFVGADLASLCSEAALQQIREKMELIDLED 440          

HSP 2 Score: 83.1889 bits (204), Expect = 1.580e-15
Identity = 41/102 (40.20%), Postives = 66/102 (64.71%), Query Frame = -2
Query:  361 RTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 666
            R + ++L ++DG ++   + +I ATNR DI+DPA++R GRLD+ I +P P E +R +IL+   RK  +  D++   LA++T  F+GA L  +C  A  LA+R
Sbjct:  606 RVINQVLTEMDGMNAKKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEASRHQILKASLRKTPLSKDLDLTFLAKNTVGFSGADLTEICQRACKLAIR 707          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: TERA2_CAEEL (Transitional endoplasmic reticulum ATPase homolog 2 OS=Caenorhabditis elegans GN=cdc-48.2 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.158e-16
Identity = 44/122 (36.07%), Postives = 71/122 (58.20%), Query Frame = -2
Query:  361 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 726
            +D+I   R  S         R + ++L ++DG ++   + +I ATNR DI+DPA++R GRLD+ I +P P E +R +I +   RK  +  D++   LA++T  F+GA L  +C  A  LA+R
Sbjct:  584 LDSIAKARGGSVGDAGGAADRVINQVLTEMDGMNAKKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEASRLQIFKASLRKTPLSADLDLNFLAKNTVGFSGADLTEICQRACKLAIR 705          

HSP 2 Score: 84.3445 bits (207), Expect = 7.092e-16
Identity = 50/132 (37.88%), Postives = 76/132 (57.58%), Query Frame = -2
Query:  331 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 726
            IDAI  KR   +  G+ E +R + +LL  +DG  +   + VIAATNR + +D AL R GR DR+I++  P    R  IL+IH++ M +  DV+ E++A     F GA L ++C EA +  +R     ++ ED
Sbjct:  311 IDAIAPKR--EKAHGEVE-KRIVSQLLTLMDGLKTRAHVVVIAATNRPNSIDGALRRFGRFDREIDIGIPDAVGRLEILRIHTKNMKLGEDVDLEQVANECHGFVGADLASLCSEAAIQQIREKMELIDLED 439          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH7_ORYSJ (Cell division protease ftsH homolog 7, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH7 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.158e-16
Identity = 52/136 (38.24%), Postives = 78/136 (57.35%), Query Frame = -2
Query:  328 IDAIGTKRFDS-EVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIH-SRK-MTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDF 726
            IDA+   R     +  + E ++T+ +LL ++DGF ++  + V+ ATNRAD+LDPAL R GR DR + +  P    R  IL++H SRK + +  DV+  ++A  T  F GA L  +  EA +LA R +   V   DF
Sbjct:  447 IDAVAKSRDGRYRIVSNDEREQTLNQLLTEMDGFDTNSAVIVLGATNRADVLDPALRRPGRFDRVVMVEAPDRFGRESILKVHVSRKELPLGKDVDLSDIAAMTTGFTGADLANLVNEAALLAGRSNKEIVEKIDF 582          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: CDC48_EMENI (Cell division control protein 48 OS=Emericella nidulans GN=cdc48 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.158e-16
Identity = 46/122 (37.70%), Postives = 73/122 (59.84%), Query Frame = -2
Query:  361 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 726
            ID+I  KR   + +G+ E +R + +LL  +DG  +   + V+AATNR + +DPAL R GR DR++++  P    R  IL IH++ M +  DV+ E +A  T  + G+ L ++C EA M  +R
Sbjct:  331 IDSIAPKR--EKTNGEVE-RRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPALRRFGRFDREVDIGIPDPTGRLEILSIHTKNMKLGEDVDLETIAAETHGYVGSDLASLCSEAAMQQIR 449          

HSP 2 Score: 76.6406 bits (187), Expect = 1.479e-13
Identity = 46/122 (37.70%), Postives = 66/122 (54.10%), Query Frame = -2
Query:  361 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 726
            +D+I   R  S         R + +LL ++DG +S   + VI ATNR + LD AL+R GRLD  + +P P + +R  IL+   RK  V  DV+ E +A  T  F+GA L  V   A  LA++
Sbjct:  605 LDSIAKSRGGSVGDAGGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQLDAALVRPGRLDTLVYVPLPDQASREGILKAQLRKTPVASDVDIEFIASKTHGFSGADLGFVTQRAVKLAIK 726          
The following BLAST results are available for this feature:
BLAST of CN189408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
NVL_HUMAN4.912e-1743.09Nuclear valosin-containing protein-like OS=Homo sa... [more]
CDC48_YEAST4.912e-1734.29Cell division control protein 48 OS=Saccharomyces ... [more]
CDC48_SCHPO1.094e-1633.57Cell division cycle protein 48 OS=Schizosaccharomy... [more]
FTSH9_ORYSJ1.429e-1644.04Cell division protease ftsH homolog 9, chloroplast... [more]
YB7A_SCHPO1.866e-1636.92Uncharacterized AAA domain-containing protein C16E... [more]
ATAD2_PONAB2.438e-1647.47ATPase family AAA domain-containing protein 2 OS=P... [more]
TERA1_CAEEL3.184e-1637.88Transitional endoplasmic reticulum ATPase homolog ... [more]
TERA2_CAEEL4.158e-1636.07Transitional endoplasmic reticulum ATPase homolog ... [more]
FTSH7_ORYSJ4.158e-1638.24Cell division protease ftsH homolog 7, chloroplast... [more]
CDC48_EMENI4.158e-1637.70Cell division control protein 48 OS=Emericella nid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001M24_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189408 ID=CN189408; Name=CN189408; organism=Citrus sinensis; type=EST; length=727bp
TTTTTTTTTTTTTTTTTATGGTACCGTCGCATTTCCTTTCCATCAACATA
CATCCTCTAACACGAGTAAAAATATCTCAAGAGTAACAGTTTGACTTTCA
TCACATTAAAAAAAATTATCACGCGGCTGACTTGGGAGTTTCACTTCTTA
TTATAACATATTATGTACAGTACAAAGACAATGTTTAATACCCATTTTTT
AATATTCAACCCAAAATATATTAATTACCAATTGAAGTAGAGGCTAAAAC
TTCGCCTTTGGATGTGTCTATGCATAGTAGTTTAAGCTAGCCTTTTTCTT
AGCCTGCACCTGAATGATACCTTCATTGAAATCCTCATGGTTGACCTCAG
TCGCATCACGGCGAAGAGCAAGCATCCCTGCTTCAACACAAACAGCTTTT
AGTTGTGCCCCATTGAAATCGTCAGTGGATCGAGCAAGTTCTTCGAAGTT
GACATCCGGGTGAACAGTCATCTTCCTCGAATGGATTTGCAAAATGCGAG
CTCTAGCTTCCTCACTCGGATGTGGTAACTCGATCTTGCGATCCAAACGG
CCAGATCGCATAAGAGCAGGGTCCAGGATATCAGCACGATTTGTTGCTGC
TATGACCTTAATCCGATCATCGCTGCTAAATCCATCGAGCTGATTGAGCA
ACTCTAACATAGTTCGCTGCACCTCCCTGTCTCCACTCACTTCACTGTCA
AACCGCTTTGTACCAATTGCGTCAATT
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