CN189408

Overview
NameCN189408
Unique NameCN189408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: SPA5L_BOVIN (Spermatogenesis-associated protein 5-like protein 1 OS=Bos taurus GN=SPATA5L1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.430e-16
Identity = 55/148 (37.16%), Postives = 86/148 (58.11%), Query Frame = -2
Query:  304 IDAIGTKRFDSEVS-GDREVQRTMLELLNQLDG---FSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR---DATEVNHEDFNEGIIQVQ 726
            +D +G K  +   S  D+  +   LE   +L+    F+S+  + V+AATNR D+LD AL+R GRLD+ I +P P E+ R  IL++ ++   + PDV+ E++A  T  F+GA L  +C EA +LAL+    + T V  E F E +  V+
Sbjct:  596 LDGVGLKTIERRGSKSDQHGKCKQLEKNEELEFQEIFNSN--VIVVAATNRPDVLDDALLRPGRLDKIIYIPPPDEKGRLSILKVCTKNTPMGPDVSLEKVAAETCFFSGADLGNLCKEAALLALQENGLEVTTVKQEHFLESLKTVK 741          

HSP 2 Score: 82.4185 bits (202), Expect = 2.695e-15
Identity = 47/126 (37.30%), Postives = 68/126 (53.97%), Query Frame = -2
Query:  304 RTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLAL-----RRDATEVNHEDFNEGIIQVQ 666
            R + ++L  LDG   D  + V+ +TNR D LDPAL R GR DR++ +  P+   R  ILQ+ + KM +   V+   LA  T  + GA L A+C EA M AL      +D   ++  DF E   ++Q
Sbjct:  322 RVVAQVLTLLDGIGEDREVVVVGSTNRPDALDPALRRPGRFDREVVIGTPTLRQRKAILQVITSKMPISGQVDLNLLAEMTVGYVGADLTALCREAAMQALLHSEKNQDNPTIDETDFLEAFKKIQ 447          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSHB_ARATH (Cell division protease ftsH homolog 11, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=FTSH11 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.092e-16
Identity = 50/131 (38.17%), Postives = 75/131 (57.25%), Query Frame = -2
Query:  334 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHE 726
            IDA+G+ R   E       ++T+ +LL ++DGF  ++ I V+AATN  DILDPAL R GR DR I +P P    R  IL+++ +   +  DV+ + +AR T  FNGA L  +   A + A    A +++ E
Sbjct:  463 IDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIIVMAATNLPDILDPALTRPGRFDRHIVVPSPDVRGREEILELYLQGKPMSEDVDVKAIARGTPGFNGADLANLVNIAAIKAAVEGAEKLSSE 589          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: ATAD2_HUMAN (ATPase family AAA domain-containing protein 2 OS=Homo sapiens GN=ATAD2 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.092e-16
Identity = 47/99 (47.47%), Postives = 59/99 (59.60%), Query Frame = -2
Query:  358 LLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHP-DVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 651
            LL  +DG  S   I VI ATNR D +DPAL R GR DR+     P +EAR  IL+IH+R     P D   EELA +   + GA +K++C EA + ALRR
Sbjct:  555 LLALMDGLDSRGEIVVIGATNRLDSIDPALRRPGRFDREFLFSLPDKEARKEILKIHTRDWNPKPLDTFLEELAENCVGYCGADIKSICAEAALCALRR 653          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: NVL_DICDI (Putative ribosome biogenesis ATPase nvl OS=Dictyostelium discoideum GN=nvl PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.580e-15
Identity = 50/141 (35.46%), Postives = 78/141 (55.32%), Query Frame = -2
Query:  328 DAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARS--TDDFNGAQLKAVCVEAGMLALRR----DATE---VNHEDF 723
            DA+  KR   +  G++  +R + +LL ++DG      + +IAATNR DI+D A+ R GRLD+ + +P PS E R  IL+  + K+ +H DV+  ++        F+GA L  +  EA   A+ R    ++TE   V  EDF
Sbjct:  669 DALAPKRGGGDGGGNQATERVVNQLLTEMDGLEKRSEVFIIAATNRPDIIDAAMCRPGRLDKMVYVPLPSPEERCEILKTLTHKIPIHQDVDLIKVGTDLRCHSFSGADLSLLVKEAANHAISRGFDNNSTEPDTVTMEDF 809          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PEX1_MOUSE (Peroxisome biogenesis factor 1 OS=Mus musculus GN=Pex1 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.064e-15
Identity = 42/102 (41.18%), Postives = 64/102 (62.75%), Query Frame = -2
Query:  361 RTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 666
            R + +LL QLDG      + V+AAT+R D++DPAL+R GRLD+ +  P P + +R  IL + S+ + +  DV+ + +A  TD F GA LKA+   A + AL+
Sbjct:  960 RVVNQLLTQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRLDKCVYCPPPDQVSRLEILTVLSKSLALADDVDLQHVASVTDSFTGADLKALLYNAQLEALQ 1061          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: NSF_ARATH (Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=NSF PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.064e-15
Identity = 50/140 (35.71%), Postives = 77/140 (55.00%), Query Frame = -2
Query:  286 ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMT----VHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDAT-------------EVNHEDFNEGIIQVQAKKKAS 654
            +LL ++DG  + + + +I  TNR D+LD AL+R GRL+ ++E+  P E  R +ILQIH+ KM     +  D+N +ELA  T +++GA+L+ V   A   AL R  +             ++  EDF   I +VQ    AS
Sbjct:  350 QLLTKIDGVEALNNVLLIGMTNRKDLLDEALLRPGRLEVQVEISLPDEAGRLQILQIHTNKMKENSFLGTDINLQELAARTKNYSGAELEGVVKSATSYALNRQLSMDDLTKPVEEENIKITMEDFLHAIYEVQPAFGAS 489          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: SEC18_CANAL (Vesicular-fusion protein SEC18 OS=Candida albicans GN=SEC18 PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.520e-15
Identity = 44/127 (34.65%), Postives = 74/127 (58.27%), Query Frame = -2
Query:  358 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMT----VHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 726
            +D++  +R   +  G       + +LL+++DG    + I VI  TNR D++D AL+R GR + +IE+  P E+ R  I  IH++K+T    +  DVNF+EL+  T +F GA+++ +C  A   A+ R
Sbjct:  387 LDSVFKQRGSGKSDGTGVGDNVVNQLLSKMDGVDQLNNILVIGMTNRLDLIDTALLRPGRFEIQIEISLPDEKGRKDIFLIHTKKLTENGILSSDVNFDELSTLTKNFTGAEIEGLCNSAKSYAISR 513          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH5_ORYSJ (Cell division protease ftsH homolog 5, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH5 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.520e-15
Identity = 52/132 (39.39%), Postives = 73/132 (55.30%), Query Frame = -2
Query:  331 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 726
            IDAIG  R   +    + ++ T+ +LL +LDGF  ++ I VIAATN  + LD AL+R GR DR I +P+P  E R +IL+ H  K+    DV+   +AR T  F+GA L  +   A + A    A  V   D
Sbjct:  331 IDAIGGSRNPKD---QQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMSKVLKSDDVDLMIIARGTPGFSGADLANLVNVAALKAAMDGAKAVTMND 459          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: ATAD2_MOUSE (ATPase family AAA domain-containing protein 2 OS=Mus musculus GN=Atad2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.520e-15
Identity = 46/99 (46.46%), Postives = 58/99 (58.59%), Query Frame = -2
Query:  358 LLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHP-DVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 651
            LL  +DG  S   I VI ATNR D +DPAL R GR DR+     P + AR  IL+IH+R     P D+  EELA     + GA +K++C EA + ALRR
Sbjct:  210 LLALMDGLDSRGEIVVIGATNRLDSIDPALRRPGRFDREFLFSLPDKNARKEILKIHTRDWNPKPVDMFLEELAEHCVGYCGADIKSICAEAALCALRR 308          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: YHI5_SCHPO (Uncharacterized AAA domain-containing protein P22H7.05c OS=Schizosaccharomyces pombe GN=SPBP22H7.05c PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.597e-15
Identity = 48/129 (37.21%), Postives = 72/129 (55.81%), Query Frame = -2
Query:  343 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEV 726
            ID +   R   +      +  T+L L+   DG  +  ++ VI ATNR + LDPAL R GR DR+   P P+++AR +IL+I+S   +   P+     LA ST  + GA LKA+C EA + A+RR   ++
Sbjct:  479 IDGLAPIRSSKQEQTHSSIVSTLLALM---DGLDTRGQVVVIGATNRPNDLDPALRRPGRFDREFYFPLPNKQARMKILEINSLHFSPKIPESYLLHLAESTSGYGGADLKALCTEAALNAVRRTFPQI 604          
The following BLAST results are available for this feature:
BLAST of CN189408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
SPA5L_BOVIN5.430e-1637.16Spermatogenesis-associated protein 5-like protein ... [more]
FTSHB_ARATH7.092e-1638.17Cell division protease ftsH homolog 11, chloroplas... [more]
ATAD2_HUMAN7.092e-1647.47ATPase family AAA domain-containing protein 2 OS=H... [more]
NVL_DICDI1.580e-1535.46Putative ribosome biogenesis ATPase nvl OS=Dictyos... [more]
PEX1_MOUSE2.064e-1541.18Peroxisome biogenesis factor 1 OS=Mus musculus GN=... [more]
NSF_ARATH2.064e-1535.71Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=N... [more]
SEC18_CANAL3.520e-1534.65Vesicular-fusion protein SEC18 OS=Candida albicans... [more]
FTSH5_ORYSJ3.520e-1539.39Cell division protease ftsH homolog 5, mitochondri... [more]
ATAD2_MOUSE3.520e-1546.46ATPase family AAA domain-containing protein 2 OS=M... [more]
YHI5_SCHPO4.597e-1537.21Uncharacterized AAA domain-containing protein P22H... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001M24_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189408 ID=CN189408; Name=CN189408; organism=Citrus sinensis; type=EST; length=727bp
TTTTTTTTTTTTTTTTTATGGTACCGTCGCATTTCCTTTCCATCAACATA
CATCCTCTAACACGAGTAAAAATATCTCAAGAGTAACAGTTTGACTTTCA
TCACATTAAAAAAAATTATCACGCGGCTGACTTGGGAGTTTCACTTCTTA
TTATAACATATTATGTACAGTACAAAGACAATGTTTAATACCCATTTTTT
AATATTCAACCCAAAATATATTAATTACCAATTGAAGTAGAGGCTAAAAC
TTCGCCTTTGGATGTGTCTATGCATAGTAGTTTAAGCTAGCCTTTTTCTT
AGCCTGCACCTGAATGATACCTTCATTGAAATCCTCATGGTTGACCTCAG
TCGCATCACGGCGAAGAGCAAGCATCCCTGCTTCAACACAAACAGCTTTT
AGTTGTGCCCCATTGAAATCGTCAGTGGATCGAGCAAGTTCTTCGAAGTT
GACATCCGGGTGAACAGTCATCTTCCTCGAATGGATTTGCAAAATGCGAG
CTCTAGCTTCCTCACTCGGATGTGGTAACTCGATCTTGCGATCCAAACGG
CCAGATCGCATAAGAGCAGGGTCCAGGATATCAGCACGATTTGTTGCTGC
TATGACCTTAATCCGATCATCGCTGCTAAATCCATCGAGCTGATTGAGCA
ACTCTAACATAGTTCGCTGCACCTCCCTGTCTCCACTCACTTCACTGTCA
AACCGCTTTGTACCAATTGCGTCAATT
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