CN189408

Overview
NameCN189408
Unique NameCN189408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: TBP7_YEAST (TAT-binding homolog 7 OS=Saccharomyces cerevisiae GN=YTA7 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.597e-15
Identity = 46/129 (35.66%), Postives = 73/129 (56.59%), Query Frame = -2
Query:  343 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNF-EELARSTDDFNGAQLKAVCVEAGMLALRRDATEV 726
            ID +   R   +      +  T+L L+   DG  +  ++ VI ATNR D +DPAL R GR DR+   P P  +AR +ILQI +RK +     NF ++LA  T  + GA L+++C EA +++++R   ++
Sbjct:  520 IDGLAPVRSSKQEQIHASIVSTLLALM---DGMDNRGQVIVIGATNRPDAVDPALRRPGRFDREFYFPLPDVKARFKILQIQTRKWSSPLSTNFIDKLAFLTKGYGGADLRSLCTEAALISIQRSFPQI 645          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH4_ARATH (Cell division protease ftsH homolog 4, mitochondrial OS=Arabidopsis thaliana GN=FTSH4 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.597e-15
Identity = 52/150 (34.67%), Postives = 85/150 (56.67%), Query Frame = -2
Query:  283 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED--FNEGIIQVQAKKKASL 726
            IDAIG  R   +    + ++ T+ ++L +LDGF  ++ I V+AATN  + LD AL+R GR DR I +P+P  E R +IL+ H  K+    DV+   +AR T  F+GA L  +   A + A    + +V   D  F +  I + +++K+++
Sbjct:  328 IDAIGGSRNPKD---QQYMKMTLNQMLVELDGFKQNEGIIVVAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMSKVLKAEDVDLMIIARGTPGFSGADLANLVNVAALKAAMDGSKDVTMSDLEFAKDRIMMGSERKSAV 474          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: NSF_PONAB (Vesicle-fusing ATPase OS=Pongo abelii GN=NSF PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.004e-15
Identity = 50/128 (39.06%), Postives = 78/128 (60.94%), Query Frame = -2
Query:  358 IDAIGTKRFDSEVSGDREVQRTML-ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH----PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 726
            IDAI  +R    ++G   V  T++ +LL+++DG    + I VI  TNR D++D AL+R GRL+ K+E+  P E+ R +IL IH+ +M  H     DV+ +ELA  T +F+GA+L+ +   A   A+ R
Sbjct:  330 IDAICKQR--GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAMETKNFSGAELEGLVRAAQSTAMNR 455          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: CD48C_ARATH (Cell division control protein 48 homolog C OS=Arabidopsis thaliana GN=CDC48C PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.004e-15
Identity = 56/147 (38.10%), Postives = 81/147 (55.10%), Query Frame = -2
Query:  319 IDAIGTKRFDSEVSGDREVQ-RTMLELLNQLDG----------FSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEG 726
            IDAIG+KR + +    RE++ R + +LL  +DG           SS   + VI ATNR D LDPAL RSGR + +I L  P E+ARA IL + ++K+ +    + + +AR T  F GA L++V   AG  A++R       E   +G
Sbjct:  335 IDAIGSKRENQQ----REMEKRIVTQLLTCMDGPGNKGDKNAPDSSAGFVLVIGATNRPDALDPALRRSGRFETEIALTAPDEDARAEILSVVAQKLRLEGPFDKKRIARLTPGFVGADLESVAYLAGRKAIKRILDSRKSEQSGDG 477          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PEX1_HUMAN (Peroxisome biogenesis factor 1 OS=Homo sapiens GN=PEX1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.841e-15
Identity = 42/101 (41.58%), Postives = 62/101 (61.39%), Query Frame = -2
Query:  364 RTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLAL 666
            R + +LL QLDG      + V+AAT+R D++DPAL+R GRLD+ +  P P + +R  IL + S  + +  DV+ + +A  TD F GA LKA+   A + AL
Sbjct:  959 RVVNQLLTQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRLDKCVYCPPPDQVSRLEILNVLSDSLPLADDVDLQHVASVTDSFTGADLKALLYNAQLEAL 1059          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH4_ORYSJ (Cell division protease ftsH homolog 4, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH4 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.841e-15
Identity = 52/132 (39.39%), Postives = 72/132 (54.55%), Query Frame = -2
Query:  331 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 726
            IDAIG  R   +    + ++ T+ +LL +LDGF  ++ I VIAATN    LD AL+R GR DR I +P+P  E R +IL+ H  K+    DV+   +AR T  F+GA L  +   A + A    A  V   D
Sbjct:  324 IDAIGGSRNPKD---QQYMRMTLNQLLVELDGFKQNEGIIVIAATNFPQSLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMLKVLKSDDVDLMIIARGTPGFSGADLANLVNVAALKAAMDGAKAVTMND 452          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: NSF_RAT (Vesicle-fusing ATPase OS=Rattus norvegicus GN=Nsf PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.024e-14
Identity = 50/128 (39.06%), Postives = 78/128 (60.94%), Query Frame = -2
Query:  358 IDAIGTKRFDSEVSGDREVQRTML-ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH----PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 726
            IDAI  +R    ++G   V  T++ +LL+++DG    + I VI  TNR D++D AL+R GRL+ K+E+  P E+ R +IL IH+ +M  H     DV+ +ELA  T +F+GA+L+ +   A   A+ R
Sbjct:  330 IDAICKQR--GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAELEGLVRAAQSTAMNR 455          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: NSF_MOUSE (Vesicle-fusing ATPase OS=Mus musculus GN=Nsf PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.024e-14
Identity = 50/128 (39.06%), Postives = 78/128 (60.94%), Query Frame = -2
Query:  358 IDAIGTKRFDSEVSGDREVQRTML-ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH----PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 726
            IDAI  +R    ++G   V  T++ +LL+++DG    + I VI  TNR D++D AL+R GRL+ K+E+  P E+ R +IL IH+ +M  H     DV+ +ELA  T +F+GA+L+ +   A   A+ R
Sbjct:  330 IDAICKQR--GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAELEGLVRAAQSTAMNR 455          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: NSF_HUMAN (Vesicle-fusing ATPase OS=Homo sapiens GN=NSF PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.024e-14
Identity = 50/128 (39.06%), Postives = 78/128 (60.94%), Query Frame = -2
Query:  358 IDAIGTKRFDSEVSGDREVQRTML-ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH----PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 726
            IDAI  +R    ++G   V  T++ +LL+++DG    + I VI  TNR D++D AL+R GRL+ K+E+  P E+ R +IL IH+ +M  H     DV+ +ELA  T +F+GA+L+ +   A   A+ R
Sbjct:  330 IDAICKQR--GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAELEGLVRAAQSTAMNR 455          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: NSF_CRIGR (Vesicle-fusing ATPase OS=Cricetulus griseus GN=NSF PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.024e-14
Identity = 50/128 (39.06%), Postives = 78/128 (60.94%), Query Frame = -2
Query:  358 IDAIGTKRFDSEVSGDREVQRTML-ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH----PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 726
            IDAI  +R    ++G   V  T++ +LL+++DG    + I VI  TNR D++D AL+R GRL+ K+E+  P E+ R +IL IH+ +M  H     DV+ +ELA  T +F+GA+L+ +   A   A+ R
Sbjct:  330 IDAICKQR--GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAELEGLVRAAQSTAMNR 455          
The following BLAST results are available for this feature:
BLAST of CN189408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
TBP7_YEAST4.597e-1535.66TAT-binding homolog 7 OS=Saccharomyces cerevisiae ... [more]
FTSH4_ARATH4.597e-1534.67Cell division protease ftsH homolog 4, mitochondri... [more]
NSF_PONAB6.004e-1539.06Vesicle-fusing ATPase OS=Pongo abelii GN=NSF PE=2 ... [more]
CD48C_ARATH6.004e-1538.10Cell division control protein 48 homolog C OS=Arab... [more]
PEX1_HUMAN7.841e-1541.58Peroxisome biogenesis factor 1 OS=Homo sapiens GN=... [more]
FTSH4_ORYSJ7.841e-1539.39Cell division protease ftsH homolog 4, mitochondri... [more]
NSF_RAT1.024e-1439.06Vesicle-fusing ATPase OS=Rattus norvegicus GN=Nsf ... [more]
NSF_MOUSE1.024e-1439.06Vesicle-fusing ATPase OS=Mus musculus GN=Nsf PE=1 ... [more]
NSF_HUMAN1.024e-1439.06Vesicle-fusing ATPase OS=Homo sapiens GN=NSF PE=1 ... [more]
NSF_CRIGR1.024e-1439.06Vesicle-fusing ATPase OS=Cricetulus griseus GN=NSF... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001M24_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189408 ID=CN189408; Name=CN189408; organism=Citrus sinensis; type=EST; length=727bp
TTTTTTTTTTTTTTTTTATGGTACCGTCGCATTTCCTTTCCATCAACATA
CATCCTCTAACACGAGTAAAAATATCTCAAGAGTAACAGTTTGACTTTCA
TCACATTAAAAAAAATTATCACGCGGCTGACTTGGGAGTTTCACTTCTTA
TTATAACATATTATGTACAGTACAAAGACAATGTTTAATACCCATTTTTT
AATATTCAACCCAAAATATATTAATTACCAATTGAAGTAGAGGCTAAAAC
TTCGCCTTTGGATGTGTCTATGCATAGTAGTTTAAGCTAGCCTTTTTCTT
AGCCTGCACCTGAATGATACCTTCATTGAAATCCTCATGGTTGACCTCAG
TCGCATCACGGCGAAGAGCAAGCATCCCTGCTTCAACACAAACAGCTTTT
AGTTGTGCCCCATTGAAATCGTCAGTGGATCGAGCAAGTTCTTCGAAGTT
GACATCCGGGTGAACAGTCATCTTCCTCGAATGGATTTGCAAAATGCGAG
CTCTAGCTTCCTCACTCGGATGTGGTAACTCGATCTTGCGATCCAAACGG
CCAGATCGCATAAGAGCAGGGTCCAGGATATCAGCACGATTTGTTGCTGC
TATGACCTTAATCCGATCATCGCTGCTAAATCCATCGAGCTGATTGAGCA
ACTCTAACATAGTTCGCTGCACCTCCCTGTCTCCACTCACTTCACTGTCA
AACCGCTTTGTACCAATTGCGTCAATT
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