CN189408

Overview
NameCN189408
Unique NameCN189408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: NSF1_DROME (Vesicle-fusing ATPase 1 OS=Drosophila melanogaster GN=comt PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.747e-14
Identity = 48/128 (37.50%), Postives = 81/128 (63.28%), Query Frame = -2
Query:  358 IDAIGTKRFDSEVSGDREVQRTML-ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKM----TVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 726
            IDAI  +R    V+G+  V  T++ +LL ++DG    + I VI  TNR D++D AL+R GRL+ ++E+  P+E+ R +IL IH+++M     ++ DV+ +E+A  T +F+GA+L+ +   A   A+ R
Sbjct:  330 IDAICKQR--GSVAGNSGVHDTVVNQLLTKIDGVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEISLPNEQGRVQILNIHTKRMREFNKINDDVDNKEIAALTKNFSGAELEGLVRAAQSSAMNR 455          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: AFG2_YEAST (ATPase family gene 2 protein OS=Saccharomyces cerevisiae GN=AFG2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.747e-14
Identity = 48/125 (38.40%), Postives = 70/125 (56.00%), Query Frame = -2
Query:  355 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKM-TVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD 726
            IDA+   R  S  S    V   +  LLN++DG      + ++AATNR D +D AL+R GRLDR I +  P   AR  IL+  ++K  T    V+  ELA  T+ ++GA++  +C EAG+ A+  D
Sbjct:  618 IDALSPDRDGSSTSAANHV---LTSLLNEIDGVEELKGVVIVAATNRPDEIDAALLRPGRLDRHIYVGPPDVNARLEILKKCTKKFNTEESGVDLHELADRTEGYSGAEVVLLCQEAGLAAIMED 739          

HSP 2 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 49/139 (35.25%), Postives = 76/139 (54.68%), Query Frame = -2
Query:  325 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEE----LARSTDDFNGAQLKAVCVEAGMLALRRD-ATEVNHEDFN 726
            ID+I   R + + SG+ E  R +  LL  +DG  +  ++ VIAATNR + +DPAL R GR D+++E+  P  +AR  IL     +M+    V   E    +A  T  + GA L A+C E+ M  ++R   T+ N + F+
Sbjct:  347 IDSIAPNRANDD-SGEVE-SRVVATLLTLMDGMGAAGKVVVIAATNRPNSVDPALRRPGRFDQEVEIGIPDVDARFDILTKQFSRMSSDRHVLDSEAIKYIASKTHGYVGADLTALCRESVMKTIQRGLGTDANIDKFS 483          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PEX6_CANGA (Peroxisomal biogenesis factor 6 OS=Candida glabrata GN=PEX6 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.980e-14
Identity = 50/134 (37.31%), Postives = 79/134 (58.96%), Query Frame = -2
Query:  334 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD-DRIKVIAATNRADILDPALMRSGRLDRKIELP-HPSEEARARILQIHSRKMTVHPDVNFEELARSTD-DFNGAQLKAVCVEAGMLALRRDATEVNHE 726
            +D++  KR +   SG   + R + +LL +LDG SSD D + +I ATNR D+LD AL+R GR D+ I L    + E +A I++  +RK  V  D+NF+EL       + GA   A+C +A + A+ R + E++ +
Sbjct:  819 VDSVAPKRGNQGDSGG-VMDRIVSQLLAELDGMSSDGDGVFIIGATNRPDLLDEALLRPGRFDKLIYLGIADTREKQANIMRALTRKFKVSSDINFDELVSDFPFSYTGADFYALCSDAMLKAMTRISKEIDEK 951          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: ATD2B_HUMAN (ATPase family AAA domain-containing protein 2B OS=Homo sapiens GN=ATAD2B PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.892e-14
Identity = 45/99 (45.45%), Postives = 57/99 (57.58%), Query Frame = -2
Query:  358 LLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 651
            LL  +DG  +   I VI ATNR D +DPAL R GR DR+     P ++AR  ILQIH+R       D    ELA     + GA +KA+C EA ++ALRR
Sbjct:  529 LLALMDGLDNRGEIVVIGATNRLDSIDPALRRPGRFDREFLFNLPDQKARKHILQIHTRDWNPKLSDAFLGELAEKCVGYCGADIKALCTEAALIALRR 627          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: YME1_SCHPO (Protein YME1 homolog OS=Schizosaccharomyces pombe GN=SPCC965.04c PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.083e-14
Identity = 53/153 (34.64%), Postives = 85/153 (55.56%), Query Frame = -2
Query:  286 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIK----VIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED--FNEGIIQVQAKKKAS 726
            +DAIG KR   + +    +++T+ +LL  LDGFS ++ +      I ATN  + LDPAL R GR DR I +P P    R  IL  H+R + +  DV+   +AR T  F GA L  +  +A + A +  +T V+  D  +++  I + A++K++
Sbjct:  368 LDAIGQKRNARDAA---HMRQTLNQLLVDLDGFSKNEDLAHPVVFIGATNFPESLDPALTRPGRFDRHIHVPLPDVRGRLAILLQHTRHVPLGKDVDLSIIARGTSGFAGADLANLINQAAVYASKNLSTAVSMRDLEWSKDRILMGAERKSA 517          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: YME1_YEAST (Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.638e-14
Identity = 47/133 (35.34%), Postives = 76/133 (57.14%), Query Frame = -2
Query:  328 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDF 726
            +DAIG KR   + +     ++T+ +LL +LDGFS    I +I ATN  + LD AL R GR D+ + +  P    RA IL+ H +K+T+  +V+   +AR T   +GA+L  +  +A + A +++A  V+   F
Sbjct:  382 LDAIGGKRNPKDQA---YAKQTLNQLLVELDGFSQTSGIIIIGATNFPEALDKALTRPGRFDKVVNVDLPDVRGRADILKHHMKKITLADNVDPTIIARGTPGLSGAELANLVNQAAVYACQKNAVSVDMSHF 511          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: NSF_CAEEL (Vesicle-fusing ATPase OS=Caenorhabditis elegans GN=nsf-1 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.638e-14
Identity = 46/128 (35.94%), Postives = 80/128 (62.50%), Query Frame = -2
Query:  358 IDAIGTKRFDSEVSGDREVQRTML-ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKM----TVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 726
            IDAI  +R    ++G   V  T++ +LL+++DG    + I VI  TNR D++D AL+R GRL+ ++E+  P E  R +IL+IH+ +M     + P+V+ E++++ T +F+GA+L+ +   A   A+ R
Sbjct:  407 IDAICKQR--GSMAGSSSVHDTVVNQLLSKMDGVEQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEVSLPDETGRLQILKIHTARMREYNKMDPNVDLEDISKRTKNFSGAELEGLVRAAQSSAMNR 532          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: NSF2_DROME (Vesicle-fusing ATPase 2 OS=Drosophila melanogaster GN=Nsf2 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.638e-14
Identity = 48/128 (37.50%), Postives = 78/128 (60.94%), Query Frame = -2
Query:  358 IDAIGTKRFDSEVSGDREVQRTML-ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKM----TVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 726
            IDAI   R    V+G+  V  T++ +LL ++DG    + I VI  TNR D++D AL+R GRL+ ++E+  P+E+ R +IL IH+++M     +  DV+  E+A  T +F+GA+L+ +   A   A+ R
Sbjct:  335 IDAICKAR--GSVAGNSGVHDTVVNQLLAKIDGVEQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEISLPNEQGRVQILNIHTKRMRDFNKIASDVDNNEIAAKTKNFSGAELEGLVRAAQSTAMNR 460          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: YME1_CAEEL (Protein YME1 homolog OS=Caenorhabditis elegans GN=ymel-1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.132e-13
Identity = 43/128 (33.59%), Postives = 74/128 (57.81%), Query Frame = -2
Query:  343 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEV 726
            ID++G+KR  + +       +T+ +LL+++DGF+ ++ I VIAATNR D LD AL+R GR D ++ +P P    R  I   +  K+     ++ + LA+ +  F GA ++ +  +A + A   +A EV
Sbjct:  302 IDSVGSKRVSNSIHP--YANQTINQLLSEMDGFTRNEGIIVIAATNRVDDLDKALLRPGRFDVRVTVPKPDLAGRVDIFNFYLSKIVHSGGIDPKVLAKGSTGFTGADIENMVNQAALKAATDNAVEV 427          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: YEJJ_SCHPO (Uncharacterized AAA domain-containing protein C31G5.19 OS=Schizosaccharomyces pombe GN=SPAC31G5.19 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.479e-13
Identity = 43/124 (34.68%), Postives = 67/124 (54.03%), Query Frame = -2
Query:  358 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 726
            ID +   R   +      +  T+L L+   DG  S  ++ +I ATNR D +DPAL R GR DR+   P P  +AR +I++IH+R      P+     LA  +  + GA L+A+C EA + +++R
Sbjct:  373 IDGLAPVRSSKQEQIHASIVSTLLALM---DGMESRGQVIIIGATNRPDAVDPALRRPGRFDREFYFPLPDRDARKKIIEIHTRNWDPPVPEWLCSMLAEKSKGYGGADLRALCTEAALNSIKR 493          
The following BLAST results are available for this feature:
BLAST of CN189408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
NSF1_DROME1.747e-1437.50Vesicle-fusing ATPase 1 OS=Drosophila melanogaster... [more]
AFG2_YEAST1.747e-1438.40ATPase family gene 2 protein OS=Saccharomyces cere... [more]
PEX6_CANGA2.980e-1437.31Peroxisomal biogenesis factor 6 OS=Candida glabrat... [more]
ATD2B_HUMAN3.892e-1445.45ATPase family AAA domain-containing protein 2B OS=... [more]
YME1_SCHPO5.083e-1434.64Protein YME1 homolog OS=Schizosaccharomyces pombe ... [more]
YME1_YEAST6.638e-1435.34Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 P... [more]
NSF_CAEEL6.638e-1435.94Vesicle-fusing ATPase OS=Caenorhabditis elegans GN... [more]
NSF2_DROME6.638e-1437.50Vesicle-fusing ATPase 2 OS=Drosophila melanogaster... [more]
YME1_CAEEL1.132e-1333.59Protein YME1 homolog OS=Caenorhabditis elegans GN=... [more]
YEJJ_SCHPO1.479e-1334.68Uncharacterized AAA domain-containing protein C31G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001M24_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189408 ID=CN189408; Name=CN189408; organism=Citrus sinensis; type=EST; length=727bp
TTTTTTTTTTTTTTTTTATGGTACCGTCGCATTTCCTTTCCATCAACATA
CATCCTCTAACACGAGTAAAAATATCTCAAGAGTAACAGTTTGACTTTCA
TCACATTAAAAAAAATTATCACGCGGCTGACTTGGGAGTTTCACTTCTTA
TTATAACATATTATGTACAGTACAAAGACAATGTTTAATACCCATTTTTT
AATATTCAACCCAAAATATATTAATTACCAATTGAAGTAGAGGCTAAAAC
TTCGCCTTTGGATGTGTCTATGCATAGTAGTTTAAGCTAGCCTTTTTCTT
AGCCTGCACCTGAATGATACCTTCATTGAAATCCTCATGGTTGACCTCAG
TCGCATCACGGCGAAGAGCAAGCATCCCTGCTTCAACACAAACAGCTTTT
AGTTGTGCCCCATTGAAATCGTCAGTGGATCGAGCAAGTTCTTCGAAGTT
GACATCCGGGTGAACAGTCATCTTCCTCGAATGGATTTGCAAAATGCGAG
CTCTAGCTTCCTCACTCGGATGTGGTAACTCGATCTTGCGATCCAAACGG
CCAGATCGCATAAGAGCAGGGTCCAGGATATCAGCACGATTTGTTGCTGC
TATGACCTTAATCCGATCATCGCTGCTAAATCCATCGAGCTGATTGAGCA
ACTCTAACATAGTTCGCTGCACCTCCCTGTCTCCACTCACTTCACTGTCA
AACCGCTTTGTACCAATTGCGTCAATT
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