CN189408

Overview
NameCN189408
Unique NameCN189408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: SEC18_SCHPO (Vesicular-fusion protein sec18 OS=Schizosaccharomyces pombe GN=sec18 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.479e-13
Identity = 54/160 (33.75%), Postives = 83/160 (51.88%), Query Frame = -2
Query:  304 IDAIGTKRFDSEVSGDREV-QRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMT----VHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR--------------DATEVNHEDFNEGIIQVQ 726
            +DAI  KR  S   GD  V  + + +LL ++DG    + I VI  TNR D++D AL+R GRL+  +E+  P E  R +IL+IH+ +M     +  DV+ EELA  T +F+GA++  +   A   A  R              +  +VN  DF   + +V+
Sbjct:  381 LDAICKKRGSS--GGDTGVGDQVVNQLLAKMDGVDQLNNILVIGMTNRKDMIDEALLRPGRLEVHMEISLPDEHGRLQILKIHTSRMASNGILENDVDMEELASLTKNFSGAEIAGLIKSASSFAFYRHIKVGTTAAVSGNLENIKVNRNDFLNALSEVR 538          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: SPA5L_XENTR (Spermatogenesis-associated protein 5-like protein 1 OS=Xenopus tropicalis GN=spata5l1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.931e-13
Identity = 44/121 (36.36%), Postives = 69/121 (57.02%), Query Frame = -2
Query:  364 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLAL 726
            +DA+  KR  S  + +    R + +LL  +DG  SD+++  +AAT+R D +DPAL R GR DR++ +  P+ + R  IL++    M    DV+   LA  T  + GA L A+C +A M A+
Sbjct:  296 VDALCPKRGHSNSAPEN---RVVAQLLTLMDGIDSDNKMVTVAATSRPDAIDPALRRPGRFDREVIIGTPTHKQRQAILEMMISNMPTDRDVDAAALADVTVGYVGADLTALCRDAAMQAV 413          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PEX6_ASHGO (Peroxisomal biogenesis factor 6 OS=Ashbya gossypii GN=PEX6 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.931e-13
Identity = 51/134 (38.06%), Postives = 80/134 (59.70%), Query Frame = -2
Query:  334 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD-DRIKVIAATNRADILDPALMRSGRLDRKIELP-HPSEEARARILQIHSRKMTVHPDVNFEELARSTD-DFNGAQLKAVCVEAGMLALRRDATEVNHE 726
            +D++  KR +   SG   + R + +LL +LDG S+  D + VI ATNR D+LD AL+R GR D+ + L    + E +A IL+  +RK T+ PDV+ ++LA S    + GA   A+C +A + A+ R A  V+ +
Sbjct:  824 LDSVAPKRGNQGDSGG-VMDRIVSQLLAELDGLSTGGDGLFVIGATNRPDLLDEALLRPGRFDKLLYLGISDTNEKQANILRALTRKFTLDPDVSLDDLAASCPFTYTGADFYALCSDAMLNAMTRIAGNVDEK 956          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: YME1_SCHMA (Protein YME1 homolog OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.523e-13
Identity = 44/128 (34.38%), Postives = 79/128 (61.72%), Query Frame = -2
Query:  292 RTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGM-LALRRDA-TEVNH-EDFNEGIIQVQAKKK 666
            +T+ +LL ++DGF S + I V+ ATN+A++LD AL+R GR D +I +  P+ E R  +L ++ +K+    +++ E+LA  T  + GA ++ +  +A +  ALR D   E++H  D  + +I   AK++
Sbjct:  285 QTINQLLAEMDGFQSKEGIIVLGATNQAEVLDKALLRPGRFDVQIHVSPPTYEGRIALLNLYLKKVKTGSNIDIEKLAHGTVGYTGADIQNLVNQAAIAAALRNDPFVEMHHLWDARDRLIMGPAKRR 412          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PEX6_GLOLA (Peroxisomal biogenesis factor 6 OS=Glomerella lagenarium GN=PEX6 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.523e-13
Identity = 48/135 (35.56%), Postives = 77/135 (57.04%), Query Frame = -2
Query:  340 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDR----IKVIAATNRADILDPALMRSGRLDRKIEL-PHPSEEARARILQIHSRKMTVHPDVNFEELARSTD-DFNGAQLKAVCVEAGMLALRRDATEVN 726
            +D++  KR +   SG   + R + +LL +LDG S  D     + VI ATNR D+LDPAL+R GR D+ + L    + + + +IL+  +RK T+HP V+   +A+     + GA   A+C +A + A+ R A  V+
Sbjct: 1095 LDSVAPKRGNQGDSGG-VMDRIVSQLLAELDGMSGGDDTSGGVFVIGATNRPDLLDPALLRPGRFDKMLYLGVSDTHDKQLKILEALTRKFTLHPSVSLHSVAQQLPFTYTGADFYALCSDAMLKAVTRQAASVD 1228          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PEX6_SCHPO (Peroxisomal ATPase pex6 OS=Schizosaccharomyces pombe GN=pex6 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.295e-13
Identity = 45/133 (33.83%), Postives = 82/133 (61.65%), Query Frame = -2
Query:  340 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDR--IKVIAATNRADILDPALMRSGRLDRKIELP-HPSEEARARILQIHSRKMTVHPDVNFEELARST-DDFNGAQLKAVCVEAGMLALRRDATEVN 726
            +D+I   R +S  SG+  + R + +LL +LD  S D+   + VI ATNR D+LDP+L+R GR D+ + L  + SEE++A +L+  ++   +   ++  E+A++   +F GA + A+C +A + A++R   E++
Sbjct:  756 LDSIAPHRGNSSDSGN-VMDRVVSQLLAELDSISKDNNKYVFVIGATNRPDLLDPSLLRPGRFDKLVYLGINKSEESKASMLRALTKTFKLDETIDLNEIAKNCHPNFTGADMYALCSDAVLSAIKRKTNEID 887          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PEX6_PENCH (Peroxisomal biogenesis factor 6 OS=Penicillium chrysogenum GN=pex6 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.303e-13
Identity = 48/137 (35.04%), Postives = 78/137 (56.93%), Query Frame = -2
Query:  334 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDR----IKVIAATNRADILDPALMRSGRLDRKIEL-PHPSEEARARILQIHSRKMTVHPDVNFEELARSTD-DFNGAQLKAVCVEAGMLALRRDATEVNHE 726
            +D++  KR +   SG   + R + +LL +LDG +  +     + VI ATNR D+LD AL+R GR D+ + L    +   +A IL+  +RK  +HPDV+ + +A      + GA L A+C +A + A+ R AT V+ +
Sbjct: 1131 LDSVAPKRGNQGDSGG-VMDRIVSQLLAELDGMNGGEENSGGVFVIGATNRPDLLDTALLRPGRFDKMLYLGVSDTHRKQATILEALTRKFALHPDVSLDRVAEQLPLTYTGADLYALCSDAMLKAITRKATAVDEK 1266          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: SPG7_RAT (Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.620e-13
Identity = 46/115 (40.00%), Postives = 70/115 (60.87%), Query Frame = -2
Query:  394 IDAIGTKRFDSEVSG--DREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSR--KMTVHPDVNFEELARSTDDFNGAQLKA 726
            IDA+G KR  S +SG  + E ++T+ +LL ++DG  + D + V+A+TNRAD+LD ALMR GRLDR + +  P+ + R  I + H +  K+T       + LA  T  F+G   K+
Sbjct:  410 IDAVGKKRSTS-MSGFSNTEEEQTLNQLLVEMDGMGTADHVIVLASTNRADVLDNALMRPGRLDRHVFIDLPTLQERREIFEQHLKGLKLTQPSSFYSQRLAELTPGFSGTAKKS 523          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: NSF_DICDI (Vesicle-fusing ATPase OS=Dictyostelium discoideum GN=nsfA PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.620e-13
Identity = 50/137 (36.50%), Postives = 74/137 (54.01%), Query Frame = -2
Query:  340 IDAI----GTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKM----TVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVN 726
            +DAI    G+++ DS V GD  V     +LL  +DG  S + I VI  TNR D++D AL+R GRL+  +E+  P E  R +I +IH+ KM     +  DVN    A +T +++GA+++ V   A   A  R     N
Sbjct:  334 LDAICKSRGSRQGDSGV-GDSVVN----QLLAMIDGVESLNNILVIGMTNRKDMIDEALLRPGRLEVHVEISLPDEHGREQIFKIHTAKMRDQNALDKDVNLANYAHTTRNYSGAEIEGVVKSAASYAFSRQVDTKN 465          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PEX6_PICPA (Peroxisomal biogenesis factor 6 OS=Pichia pastoris GN=PEX6 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.339e-13
Identity = 49/138 (35.51%), Postives = 80/138 (57.97%), Query Frame = -2
Query:  334 IDAIGTKRFDSEVSGDRE--VQRTMLELLNQLDGFSSDDR---IKVIAATNRADILDPALMRSGRLDRKIEL-PHPSEEARARILQIHSRKMTVHPDVNFEELARSTD-DFNGAQLKAVCVEAGMLALRRDATEVNHE 726
            +D++  KR +    GD E  + R + +LL +LDG S  D    + V+ ATNR D+LD AL+R GR D+ + L    + E +++I++  SRK  +HP V+ +++A S    F GA   A+C +A + A+ R A  V+ +
Sbjct:  920 LDSVAPKRGNQ---GDSEGVMDRIVSQLLAELDGMSGGDGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGVSDTHEKQSKIMEALSRKFHLHPSVDLDKVAESCPFTFTGADFYALCSDAMLNAMTRIANTVDEK 1054          
The following BLAST results are available for this feature:
BLAST of CN189408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
SEC18_SCHPO1.479e-1333.75Vesicular-fusion protein sec18 OS=Schizosaccharomy... [more]
SPA5L_XENTR1.931e-1336.36Spermatogenesis-associated protein 5-like protein ... [more]
PEX6_ASHGO1.931e-1338.06Peroxisomal biogenesis factor 6 OS=Ashbya gossypii... [more]
YME1_SCHMA2.523e-1334.38Protein YME1 homolog OS=Schistosoma mansoni PE=2 S... [more]
PEX6_GLOLA2.523e-1335.56Peroxisomal biogenesis factor 6 OS=Glomerella lage... [more]
PEX6_SCHPO3.295e-1333.83Peroxisomal ATPase pex6 OS=Schizosaccharomyces pom... [more]
PEX6_PENCH4.303e-1335.04Peroxisomal biogenesis factor 6 OS=Penicillium chr... [more]
SPG7_RAT5.620e-1340.00Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1[more]
NSF_DICDI5.620e-1336.50Vesicle-fusing ATPase OS=Dictyostelium discoideum ... [more]
PEX6_PICPA7.339e-1335.51Peroxisomal biogenesis factor 6 OS=Pichia pastoris... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001M24_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189408 ID=CN189408; Name=CN189408; organism=Citrus sinensis; type=EST; length=727bp
TTTTTTTTTTTTTTTTTATGGTACCGTCGCATTTCCTTTCCATCAACATA
CATCCTCTAACACGAGTAAAAATATCTCAAGAGTAACAGTTTGACTTTCA
TCACATTAAAAAAAATTATCACGCGGCTGACTTGGGAGTTTCACTTCTTA
TTATAACATATTATGTACAGTACAAAGACAATGTTTAATACCCATTTTTT
AATATTCAACCCAAAATATATTAATTACCAATTGAAGTAGAGGCTAAAAC
TTCGCCTTTGGATGTGTCTATGCATAGTAGTTTAAGCTAGCCTTTTTCTT
AGCCTGCACCTGAATGATACCTTCATTGAAATCCTCATGGTTGACCTCAG
TCGCATCACGGCGAAGAGCAAGCATCCCTGCTTCAACACAAACAGCTTTT
AGTTGTGCCCCATTGAAATCGTCAGTGGATCGAGCAAGTTCTTCGAAGTT
GACATCCGGGTGAACAGTCATCTTCCTCGAATGGATTTGCAAAATGCGAG
CTCTAGCTTCCTCACTCGGATGTGGTAACTCGATCTTGCGATCCAAACGG
CCAGATCGCATAAGAGCAGGGTCCAGGATATCAGCACGATTTGTTGCTGC
TATGACCTTAATCCGATCATCGCTGCTAAATCCATCGAGCTGATTGAGCA
ACTCTAACATAGTTCGCTGCACCTCCCTGTCTCCACTCACTTCACTGTCA
AACCGCTTTGTACCAATTGCGTCAATT
back to top